mRNA_M-pyrifera_M_contig97745.22515.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97745.22515.1
Unique NamemRNA_M-pyrifera_M_contig97745.22515.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig97745.22515.1 vs. uniprot
Match: A0A5A8CBC1_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CBC1_CAFRO)

HSP 1 Score: 89.4 bits (220), Expect = 4.050e-19
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 FLEERVAELEEARAGLLRQLRINAQQIGKDSLRYFGLSGEQMQLVNEFAEALRSGEGEAALPEKDESAKLRR 216
            FL  RV ELE  R  LLRQLRINAQQ+G DSLRYFGL+G+QM LVNEFAE LR  EG  ALPE+D+SA LRR
Sbjct:  472 FLARRVEELEAERVELLRQLRINAQQVGTDSLRYFGLTGDQMTLVNEFAENLR--EGTVALPERDDSAALRR 541
[Close]
BLAST of mRNA_M-pyrifera_M_contig97745.22515.1 vs. uniprot
Match: A0A7S2SL49_9STRA (Hypothetical protein n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SL49_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.350e-6
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:    4 LEERVAELEEARAGLLRQLRINAQQIGKDSLRYFGLSGEQMQLVNEFAEALRSGEGEAALPEKDESAKLRREL 222
            LE++  +LE+ R  LL  LR+NAQ +G   ++++GL+ +Q+ LVN F E LR  EG   LP  D+S +L+ E+
Sbjct:  478 LEQQNEDLEDERLRLLESLRLNAQNMGDKGMKFYGLTADQVILVNRFVENLR--EGNVDLPLNDKSLQLKEEI 548
[Close]
BLAST of mRNA_M-pyrifera_M_contig97745.22515.1 vs. uniprot
Match: A0A812LQD8_9DINO (CEP290 protein n=2 Tax=Sar TaxID=2698737 RepID=A0A812LQD8_9DINO)

HSP 1 Score: 51.6 bits (122), Expect = 8.230e-6
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   91 SLRYFGLSGEQMQLVNEFAEALRSGEGEAALPEKDESA 204
            SLRYFGL+G+QM LVNEFAE LR  EG  ALPE+D+SA
Sbjct:  540 SLRYFGLTGDQMTLVNEFAENLR--EGTVALPERDDSA 575
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97745.22515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A5A8CBC1_CAFRO4.050e-1972.22Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A7S2SL49_9STRA2.350e-642.47Hypothetical protein n=2 Tax=labyrinthulid quahog ... [more]
A0A812LQD8_9DINO8.230e-673.68CEP290 protein n=2 Tax=Sar TaxID=2698737 RepID=A0A... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97745contigM-pyrifera_M_contig97745:19..240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816894.5579064-CDS-M-pyrifera_M_contig97745:18..2401622816894.5579064-CDS-M-pyrifera_M_contig97745:18..240Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97745 19..240 +
1692278241.294351-CDS-M-pyrifera_M_contig97745:18..2401692278241.294351-CDS-M-pyrifera_M_contig97745:18..240Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97745 19..240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97745.22515.1prot_M-pyrifera_M_contig97745.22515.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97745 19..240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97745.22515.1

>prot_M-pyrifera_M_contig97745.22515.1 ID=prot_M-pyrifera_M_contig97745.22515.1|Name=mRNA_M-pyrifera_M_contig97745.22515.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
FLEERVAELEEARAGLLRQLRINAQQIGKDSLRYFGLSGEQMQLVNEFAE
ALRSGEGEAALPEKDESAKLRREL
back to top

mRNA from alignment at M-pyrifera_M_contig97745:19..240+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97745.22515.1 ID=mRNA_M-pyrifera_M_contig97745.22515.1|Name=mRNA_M-pyrifera_M_contig97745.22515.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig97745:19..240+ (Macrocystis pyrifera P11B4 male)
TTCCTCGAAGAACGAGTGGCCGAGCTGGAAGAGGCCCGTGCGGGATTGCT
GCGGCAGCTGCGGATTAACGCGCAGCAGATCGGAAAGGACTCGCTGCGCT
ACTTTGGGCTGTCTGGCGAGCAGATGCAGCTGGTGAACGAGTTTGCCGAA
GCGCTCAGGTCTGGGGAAGGAGAGGCTGCCTTGCCTGAAAAGGACGAGAG
TGCGAAATTGCGAAGGGAGTTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig97745:19..240+

>mRNA_M-pyrifera_M_contig97745.22515.1 ID=mRNA_M-pyrifera_M_contig97745.22515.1|Name=mRNA_M-pyrifera_M_contig97745.22515.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig97745:19..240+ (Macrocystis pyrifera P11B4 male)
TTCCTCGAAGAACGAGTGGCCGAGCTGGAAGAGGCCCGTGCGGGATTGCT
GCGGCAGCTGCGGATTAACGCGCAGCAGATCGGAAAGGACTCGCTGCGCT
ACTTTGGGCTGTCTGGCGAGCAGATGCAGCTGGTGAACGAGTTTGCCGAA
GCGCTCAGGTCTGGGGAAGGAGAGGCTGCCTTGCCTGAAAAGGACGAGAG
TGCGAAATTGCGAAGGGAGTTGTTCCTCGAAGAACGAGTGGCCGAGCTGG
AAGAGGCCCGTGCGGGATTGCTGCGGCAGCTGCGGATTAACGCGCAGCAG
ATCGGAAAGGACTCGCTGCGCTACTTTGGGCTGTCTGGCGAGCAGATGCA
GCTGGTGAACGAGTTTGCCGAAGCGCTCAGGTCTGGGGAAGGAGAGGCTG
CCTTGCCTGAAAAGGACGAGAGTGCGAAATTGCGAAGGGAGTTG
back to top