mRNA_M-pyrifera_M_contig97615.22487.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97615.22487.1
Unique NamemRNA_M-pyrifera_M_contig97615.22487.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig97615.22487.1 vs. uniprot
Match: UPI00096B4742 (iduronate 2-sulfatase-like n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00096B4742)

HSP 1 Score: 134 bits (337), Expect = 1.780e-37
Identity = 63/113 (55.75%), Postives = 81/113 (71.68%), Query Frame = 1 
Query:    1 QYMKTPNLDKFAKTALAFEQAHCQMSICSASRNSFLSGRRPDRTEVINFL--TDFRMRGPNWVSWPEYFKENNYTTLGIGKIYHPGHPPNNDEPKSWSQDLPYIKQAPDNCHN 333
            +++ TPNLD+ AK +L F++A+CQ ++C  SRNSF++GRRPD T V   L   +FR+ GP+W+S PE+FK + YTTLG GK YHP  PPN DEPKSWSQD PY   A   C N
Sbjct:   46 KHIITPNLDRLAKESLVFQRAYCQHALCIPSRNSFMTGRRPDTTHVWAGLGNANFRVTGPDWISLPEHFKNSGYTTLGGGKTYHPNSPPNWDEPKSWSQDQPYFPFALVKCPN 158
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BLAST of mRNA_M-pyrifera_M_contig97615.22487.1 vs. uniprot
Match: A0A7S3NKB3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKB3_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.910e-37
Identity = 58/110 (52.73%), Postives = 78/110 (70.91%), Query Frame = 1 
Query:    1 QYMKTPNLDKFAKTALAFEQAHCQMSICSASRNSFLSGRRPDRTEVINFLTDFRMRGPNWVSWPEYFKENNYTTLGIGKIYHPGHPPNNDEPKSWSQDLPYIKQAPDNCH 330
            Q + TPN+D  +   + FE+A+ Q ++C+ SRNSF++GRRPDRT+V NFL +FR  GP WV+ P+YFK++N+ TLG GK +HP  PPN DEP SWSQ  PY     D C+
Sbjct:   25 QIISTPNIDALSSRGVVFEKAYAQFAVCAPSRNSFMTGRRPDRTQVYNFLDNFRQVGPEWVTLPQYFKQHNFITLGGGKTFHPDLPPNYDEPMSWSQIEPYFTFIDDVCN 134
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BLAST of mRNA_M-pyrifera_M_contig97615.22487.1 vs. uniprot
Match: A0A1X7TKQ4_AMPQE (Sulfatase domain-containing protein n=3 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TKQ4_AMPQE)

HSP 1 Score: 135 bits (341), Expect = 5.400e-36
Identity = 63/113 (55.75%), Postives = 82/113 (72.57%), Query Frame = 1 
Query:    1 QYMKTPNLDKFAKTALAFEQAHCQMSICSASRNSFLSGRRPDRTEV-INF-LTDFRMRGPNWVSWPEYFKENNYTTLGIGKIYHPGHPPNNDEPKSWSQDLPYIKQAPDNCHN 333
            +Y+ TPNLD+ AK +  F++A+CQ ++C  SRNSF++GRRPD T V I F   +FR+ GP+W+S PE+FK+N YTTLG GK +HP  PPN DEPKSWSQD PY   +   C N
Sbjct:    8 KYIHTPNLDRLAKESFVFQRAYCQHAVCIPSRNSFMTGRRPDTTHVWIGFGNANFRVTGPDWISLPEHFKKNGYTTLGGGKTFHPNSPPNWDEPKSWSQDQPYFPFSLAKCPN 120
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BLAST of mRNA_M-pyrifera_M_contig97615.22487.1 vs. uniprot
Match: A0A1X7TGB5_AMPQE (Sulfatase domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TGB5_AMPQE)

HSP 1 Score: 134 bits (337), Expect = 9.190e-36
Identity = 63/113 (55.75%), Postives = 81/113 (71.68%), Query Frame = 1 
Query:    1 QYMKTPNLDKFAKTALAFEQAHCQMSICSASRNSFLSGRRPDRTEVINFL--TDFRMRGPNWVSWPEYFKENNYTTLGIGKIYHPGHPPNNDEPKSWSQDLPYIKQAPDNCHN 333
            +++ TPNLD+ AK +L F++A+CQ ++C  SRNSF++GRRPD T V   L   +FR+ GP+W+S PE+FK + YTTLG GK YHP  PPN DEPKSWSQD PY   A   C N
Sbjct:   46 KHIITPNLDRLAKESLVFQRAYCQHALCIPSRNSFMTGRRPDTTHVWAGLGNANFRVTGPDWISLPEHFKNSGYTTLGGGKTYHPNSPPNWDEPKSWSQDQPYFPFALVKCPN 158
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BLAST of mRNA_M-pyrifera_M_contig97615.22487.1 vs. uniprot
Match: A0A1X7TLE1_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TLE1_AMPQE)

HSP 1 Score: 134 bits (337), Expect = 2.280e-35
Identity = 63/113 (55.75%), Postives = 81/113 (71.68%), Query Frame = 1 
Query:    1 QYMKTPNLDKFAKTALAFEQAHCQMSICSASRNSFLSGRRPDRTEVINFL--TDFRMRGPNWVSWPEYFKENNYTTLGIGKIYHPGHPPNNDEPKSWSQDLPYIKQAPDNCHN 333
            +++ TPNLD+ AK +L F++A+CQ ++C  SRNSF++GRRPD T V   L   +FR+ GP+W+S PE+FK + YTTLG GK YHP  PPN DEPKSWSQD PY   A   C N
Sbjct:   46 KHIITPNLDRLAKESLVFQRAYCQHALCIPSRNSFMTGRRPDTTHVWAGLGNANFRVTGPDWISLPEHFKNSGYTTLGGGKTYHPNSPPNWDEPKSWSQDQPYFPFALVKCPN 158
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BLAST of mRNA_M-pyrifera_M_contig97615.22487.1 vs. uniprot
Match: A0A1X7TZE8_AMPQE (Sulfatase domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TZE8_AMPQE)

HSP 1 Score: 135 bits (341), Expect = 2.400e-35
Identity = 62/110 (56.36%), Postives = 80/110 (72.73%), Query Frame = 1 
Query:    4 YMKTPNLDKFAKTALAFEQAHCQMSICSASRNSFLSGRRPDRTEVINFL--TDFRMRGPNWVSWPEYFKENNYTTLGIGKIYHPGHPPNNDEPKSWSQDLPYIKQAPDNC 327
            Y+ TPNLD+ AK +L F++A+CQ ++C  SRNSF++G+RPD T V   L  + FR+ GP+W+S PE+FK N +TTLG GK YHPG PP+ DEPKSWSQD PY      NC
Sbjct:   50 YIHTPNLDRLAKESLVFQRAYCQHAVCIPSRNSFMTGKRPDTTGVWIGLGNSSFRVTGPDWISLPEHFKNNGFTTLGGGKTYHPGSPPDWDEPKSWSQDQPYFAFKGSNC 159
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BLAST of mRNA_M-pyrifera_M_contig97615.22487.1 vs. uniprot
Match: A0A6S8BXY1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8BXY1_9STRA)

HSP 1 Score: 133 bits (335), Expect = 5.590e-34
Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = 1 
Query:    4 YMKTPNLDKFAKTALAFEQAHCQMSICSASRNSFLSGRRPDRTEVINFLTDFRMRGPNWVSWPEYFKENNYTTLGIGKIYHPGHPPNNDEPKSWSQDLPYIKQAPDNCHN 333
            +M TPN+DK A     F+ A+ Q ++C+ SRNSF++GRRP +T+V NF+ DFR  GP+W++ P+YFK +N+ TLG GK +HPG P + DEP SWS D PY     D+C++
Sbjct:  116 FMSTPNIDKIASRGAVFQSAYSQFAVCAPSRNSFMTGRRPQKTQVYNFINDFRQVGPDWITLPQYFKLHNFLTLGGGKTFHPGLPKDYDEPYSWSPDFPYFPLNDDSCNS 225
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BLAST of mRNA_M-pyrifera_M_contig97615.22487.1 vs. uniprot
Match: R1DGX3_EMIHU (Sulfatase domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DGX3_EMIHU)

HSP 1 Score: 132 bits (332), Expect = 5.610e-34
Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:   13 TPNLDKFAKTALAFEQAHCQMSICSASRNSFLSGRRPDRTEVINFLTDFRMRGPNWVSWPEYFKENNYTTLGIGKIYHPGHPPNNDEPKSWSQDLPYI 306
            TP++D+ AK++  F++A+CQ +IC  SRNSFLSGRRP RT+  NFL  FR  GPNWVS P++FK++NYT L  GK YHP  PP  D+P SWS D PY+
Sbjct:   39 TPHIDRLAKSSTVFDRAYCQQAICGPSRNSFLSGRRPQRTQSWNFLNHFREVGPNWVSLPQWFKQHNYTALATGKTYHPNLPPRWDQPLSWSADRPYV 136
[Close]
BLAST of mRNA_M-pyrifera_M_contig97615.22487.1 vs. uniprot
Match: A0A7S4BIM9_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BIM9_CHRCT)

HSP 1 Score: 126 bits (317), Expect = 1.590e-33
Identity = 61/118 (51.69%), Postives = 79/118 (66.95%), Query Frame = 1 
Query:    1 QYMKTPNLDKFAKTALAFEQAHCQMSICSASRNSFLSGRRPDRTEVINFLTDFRMRG---------PNWVSWPEYFKENNYTTLGIGKIYHPGHPPNNDEPKSWSQDLPYIKQAPDNC 327
            ++M TP LD FA+ AL F++A+   +ICSASRNSFLSGR PD+T   NF+  FR  G          +WVS P++FKE+ YT LG GK+YHP  PP NDEP SWS+D PY++ +   C
Sbjct:   42 KHMYTPALDAFAREALTFDRAYTNFAICSASRNSFLSGRVPDKTRTWNFIDHFRHSGLSSNGGPSGRDWVSLPQFFKEHGYTVLGHGKMYHPFKPPFNDEPLSWSKDQPYVQPSETYC 159
[Close]
BLAST of mRNA_M-pyrifera_M_contig97615.22487.1 vs. uniprot
Match: R1CXE9_EMIHU (Sulfatase domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CXE9_EMIHU)

HSP 1 Score: 111 bits (278), Expect = 2.070e-28
Identity = 54/106 (50.94%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:   13 TPNLDKFAKTALAFEQAHCQMSICSASRNSFLSGRRPDRTEVINFLTDFRMRGPNWVSWPEYFKENNYTTLGIGKIYHP---GHPPNNDEPKSWSQDLPYIKQAPD 321
            TPNLD FAK +L FE+A+ Q S CS SR+SF++GR P +T+V NF++ FR  G +WV+ P+YFK+N Y   G GK++HP   G P NND+P SW  D  Y    P+
Sbjct:   29 TPNLDAFAKRSLTFERAYVQFSHCSPSRSSFMTGRTPQQTQVYNFVSSFRTVGRDWVTLPQYFKDNGYYVAGGGKLFHPDSSGPPLNNDQPLSW--DSYYFPNDPE 132
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97615.22487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00096B47421.780e-3755.75iduronate 2-sulfatase-like n=1 Tax=Amphimedon quee... [more]
A0A7S3NKB3_9STRA1.910e-3752.73Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A1X7TKQ4_AMPQE5.400e-3655.75Sulfatase domain-containing protein n=3 Tax=Amphim... [more]
A0A1X7TGB5_AMPQE9.190e-3655.75Sulfatase domain-containing protein n=1 Tax=Amphim... [more]
A0A1X7TLE1_AMPQE2.280e-3555.75Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A1X7TZE8_AMPQE2.400e-3556.36Sulfatase domain-containing protein n=1 Tax=Amphim... [more]
A0A6S8BXY1_9STRA5.590e-3450.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
R1DGX3_EMIHU5.610e-3458.16Sulfatase domain-containing protein n=1 Tax=Emilia... [more]
A0A7S4BIM9_CHRCT1.590e-3351.69Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
R1CXE9_EMIHU2.070e-2850.94Sulfatase domain-containing protein n=1 Tax=Emilia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97615contigM-pyrifera_M_contig97615:120..452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score133.3
Seed ortholog evalue7e-29
Seed eggNOG ortholog400682.PAC_15707689
Preferred nameIDS
KEGG koko:K01136
KEGG ReactionR07812,R07821
KEGG Pathwayko00531,ko01100,ko04142,map00531,map01100,map04142
KEGG ModuleM00076,M00078
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0003674,GO:0003824,GO:0004423,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005775,GO:0006022,GO:0006026,GO:0006027,GO:0006029,GO:0006082,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008484,GO:0009056,GO:0009057,GO:0009100,GO:0009987,GO:0016787,GO:0016788,GO:0019538,GO:0030203,GO:0030204,GO:0030207,GO:0031974,GO:0043170,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044273,GO:0044281,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0050654,GO:0070013,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1903510
EggNOG free text desc.iduronate 2-sulfatase
EggNOG OGs38CRA@33154,3BGPB@33208,COG3119@1,KOG3867@2759
EC3.1.6.13
COG Functional cat.P
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size333
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816893.4146407-UTR-M-pyrifera_M_contig97615:119..1251622816893.4146407-UTR-M-pyrifera_M_contig97615:119..125Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig97615 120..125 +
1692278240.7367516-UTR-M-pyrifera_M_contig97615:119..1251692278240.7367516-UTR-M-pyrifera_M_contig97615:119..125Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig97615 120..125 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816893.4258473-CDS-M-pyrifera_M_contig97615:125..4521622816893.4258473-CDS-M-pyrifera_M_contig97615:125..452Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97615 126..452 +
1692278240.7524226-CDS-M-pyrifera_M_contig97615:125..4521692278240.7524226-CDS-M-pyrifera_M_contig97615:125..452Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97615 126..452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97615.22487.1prot_M-pyrifera_M_contig97615.22487.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97615 126..452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97615.22487.1

>prot_M-pyrifera_M_contig97615.22487.1 ID=prot_M-pyrifera_M_contig97615.22487.1|Name=mRNA_M-pyrifera_M_contig97615.22487.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
MKTPNLDKFAKTALAFEQAHCQMSICSASRNSFLSGRRPDRTEVINFLTD
FRMRGPNWVSWPEYFKENNYTTLGIGKIYHPGHPPNNDEPKSWSQDLPYI
KQAPDNCHN
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mRNA from alignment at M-pyrifera_M_contig97615:120..452+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97615.22487.1 ID=mRNA_M-pyrifera_M_contig97615.22487.1|Name=mRNA_M-pyrifera_M_contig97615.22487.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig97615:120..452+ (Macrocystis pyrifera P11B4 male)
CAGTACATGAAGACTCCAAACTTGGATAAGTTTGCGAAGACAGCACTTGC
GTTTGAGCAAGCGCATTGCCAGATGTCGATTTGTAGTGCTTCACGAAATT
CCTTCCTTTCAGGGCGTCGACCGGACCGAACGGAGGTGATCAACTTTCTC
ACAGACTTTCGTATGCGTGGCCCCAATTGGGTGTCTTGGCCAGAGTATTT
CAAGGAGAATAACTACACAACACTTGGGATTGGGAAAATTTACCATCCTG
GCCATCCCCCCAACAATGACGAGCCCAAATCATGGTCTCAAGATCTTCCT
TACATCAAGCAAGCCCCAGACAATTGCCACAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97615:120..452+

>mRNA_M-pyrifera_M_contig97615.22487.1 ID=mRNA_M-pyrifera_M_contig97615.22487.1|Name=mRNA_M-pyrifera_M_contig97615.22487.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig97615:120..452+ (Macrocystis pyrifera P11B4 male)
ATGAAGACTCCAAACTTGGATAAGTTTGCGAAGACAGCACTTGCGTTTGA
GCAAGCGCATTGCCAGATGTCGATTTGTAGTGCTTCACGAAATTCCTTCC
TTTCAGGGCGTCGACCGGACCGAACGGAGGTGATCAACTTTCTCACAGAC
TTTCGTATGCGTGGCCCCAATTGGGTGTCTTGGCCAGAGTATTTCAAGGA
GAATAACTACACAACACTTGGGATTGGGAAAATTTACCATCCTGGCCATC
CCCCCAACAATGACGAGCCCAAATCATGGTCTCAAGATCTTCCTTACATC
AAGCAAGCCCCAGACAATTGCCACAATATGAAGACTCCAAACTTGGATAA
GTTTGCGAAGACAGCACTTGCGTTTGAGCAAGCGCATTGCCAGATGTCGA
TTTGTAGTGCTTCACGAAATTCCTTCCTTTCAGGGCGTCGACCGGACCGA
ACGGAGGTGATCAACTTTCTCACAGACTTTCGTATGCGTGGCCCCAATTG
GGTGTCTTGGCCAGAGTATTTCAAGGAGAATAACTACACAACACTTGGGA
TTGGGAAAATTTACCATCCTGGCCATCCCCCCAACAATGACGAGCCCAAA
TCATGGTCTCAAGATCTTCCTTACATCAAGCAAGCCCCAGACAATTGCCA
CAAT
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