mRNA_M-pyrifera_M_contig97589.22480.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97589.22480.1
Unique NamemRNA_M-pyrifera_M_contig97589.22480.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97589.22480.1 vs. uniprot
Match: K4AV60_SOLLC (Uncharacterized protein n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=K4AV60_SOLLC)

HSP 1 Score: 69.7 bits (169), Expect = 6.470e-15
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = -1
Query:   10 QKEGMQHEDFPGGHPS*YYSRPNSLNFGVLMGSGACELV 126
            QK G++HEDFPGGHP  YYSRPN+LNFGVLMGSGA  L+
Sbjct:   13 QKGGIKHEDFPGGHPCYYYSRPNTLNFGVLMGSGAFVLI 51          
BLAST of mRNA_M-pyrifera_M_contig97589.22480.1 vs. uniprot
Match: A0A5K1F0N5_9MAGN (Uncharacterized protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1F0N5_9MAGN)

HSP 1 Score: 66.2 bits (160), Expect = 3.120e-13
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = -1
Query:   28 KEGMQHEDFPGGHPS*YYSRPNSLNFGVLMGS 123
            K+GMQHEDFPGGHPS YYSRP++LNFGVLMGS
Sbjct:   49 KKGMQHEDFPGGHPSQYYSRPSTLNFGVLMGS 80          
BLAST of mRNA_M-pyrifera_M_contig97589.22480.1 vs. uniprot
Match: A0A2K1IA13_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IA13_PHYPA)

HSP 1 Score: 64.3 bits (155), Expect = 1.210e-12
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 1
Query:    1 MRSYQLTCTGSHQNSEVKRVWARVVLGWVTSWEVLVLHPF 120
            MRSYQ   T SHQNSEVKR+WA +VLGWVTS EV VLHPF
Sbjct:    1 MRSYQGYYTRSHQNSEVKRLWAGIVLGWVTSREVPVLHPF 40          
BLAST of mRNA_M-pyrifera_M_contig97589.22480.1 vs. uniprot
Match: A0A835J590_9ROSI (Uncharacterized protein n=1 Tax=Salix dunnii TaxID=1413687 RepID=A0A835J590_9ROSI)

HSP 1 Score: 67.0 bits (162), Expect = 2.140e-12
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = -2
Query:   21 KKGCNTRTSQEVTHPSTTLAQTRLTSEF*WDPVH 122
            K+GCNTRTSQEVTHPSTTLAQ RLTSEF WDPVH
Sbjct:   71 KEGCNTRTSQEVTHPSTTLAQARLTSEFGWDPVH 104          
BLAST of mRNA_M-pyrifera_M_contig97589.22480.1 vs. uniprot
Match: A0A5K1F893_9MAGN (Uncharacterized protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1F893_9MAGN)

HSP 1 Score: 64.7 bits (156), Expect = 4.910e-12
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = -1
Query:   13 KEGMQHEDFPGGHPS*YYSRPNSLNFGVLMGSGACEL 123
            K GMQHEDFP GHPS YYS P++LNFGVLMGSGA  L
Sbjct:  101 KRGMQHEDFPRGHPSQYYSLPSTLNFGVLMGSGALVL 137          
BLAST of mRNA_M-pyrifera_M_contig97589.22480.1 vs. uniprot
Match: A0A371FV47_MUCPR (Uncharacterized protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371FV47_MUCPR)

HSP 1 Score: 62.8 bits (151), Expect = 9.660e-12
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 3
Query:    6 IIPTHMHRIPSELRS*ASLGESSTRMGDLLGSPRVASL 119
            IIP  MHRIPSELRS A LG+SSTRMGDLLGSPRVA L
Sbjct:   50 IIPVLMHRIPSELRSQACLGDSSTRMGDLLGSPRVAPL 87          
BLAST of mRNA_M-pyrifera_M_contig97589.22480.1 vs. uniprot
Match: A0A2H9ZRU7_9ASPA (Uncharacterized protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZRU7_9ASPA)

HSP 1 Score: 60.8 bits (146), Expect = 2.200e-11
Identity = 28/38 (73.68%), Postives = 29/38 (76.32%), Query Frame = -1
Query:    1 MQHEDFPGGHPS*YYSRPNSLNFGVLMGSGACELV*SH 114
            MQHEDFP GHPS YYSRP+ LN GVLMGSG   LV  H
Sbjct:    1 MQHEDFPRGHPSQYYSRPSMLNCGVLMGSGTLVLVWLH 38          
BLAST of mRNA_M-pyrifera_M_contig97589.22480.1 vs. uniprot
Match: A0A834WXI1_9FABA (Protein NRT1/ PTR FAMILY 6.1 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WXI1_9FABA)

HSP 1 Score: 62.4 bits (150), Expect = 3.520e-11
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 1
Query:   40 NSEVKRVWARVVLGWVTSWEVLVLHPFF 123
            NSEVKR WARVVLGWVTSWEVLVLHPFF
Sbjct:   19 NSEVKRAWARVVLGWVTSWEVLVLHPFF 46          
BLAST of mRNA_M-pyrifera_M_contig97589.22480.1 vs. uniprot
Match: A0A438GIP5_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GIP5_VITVI)

HSP 1 Score: 62.8 bits (151), Expect = 4.140e-11
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    1 MRSYQLTCTGSHQNSEVKRVWARVVLGWVTSWEVLVLHPF 120
            +RSYQ   TGSHQNS VKR WA+VVLGWVTSWEVL    F
Sbjct:   54 LRSYQHQRTGSHQNSTVKRSWAKVVLGWVTSWEVLTRKQF 93          
BLAST of mRNA_M-pyrifera_M_contig97589.22480.1 vs. uniprot
Match: A0A0B2P045_GLYSO (Uncharacterized protein (Fragment) n=1 Tax=Glycine soja TaxID=3848 RepID=A0A0B2P045_GLYSO)

HSP 1 Score: 59.3 bits (142), Expect = 6.350e-11
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = -1
Query:   13 MQHEDFPGGHPS*YYSRPNSLNFGVLMGSGACEL 114
            +QHEDFPGGHP  YYSRP++LN GVLMGSGA  L
Sbjct:    3 VQHEDFPGGHPFEYYSRPSTLNCGVLMGSGALVL 36          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97589.22480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K4AV60_SOLLC6.470e-1576.92Uncharacterized protein n=1 Tax=Solanum lycopersic... [more]
A0A5K1F0N5_9MAGN3.120e-1387.50Uncharacterized protein (Fragment) n=1 Tax=Nymphae... [more]
A0A2K1IA13_PHYPA1.210e-1277.50Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A835J590_9ROSI2.140e-1291.18Uncharacterized protein n=1 Tax=Salix dunnii TaxID... [more]
A0A5K1F893_9MAGN4.910e-1278.38Uncharacterized protein (Fragment) n=1 Tax=Nymphae... [more]
A0A371FV47_MUCPR9.660e-1284.21Uncharacterized protein (Fragment) n=1 Tax=Mucuna ... [more]
A0A2H9ZRU7_9ASPA2.200e-1173.68Uncharacterized protein n=1 Tax=Apostasia shenzhen... [more]
A0A834WXI1_9FABA3.520e-1196.43Protein NRT1/ PTR FAMILY 6.1 n=1 Tax=Senna tora Ta... [more]
A0A438GIP5_VITVI4.140e-1172.50Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A0B2P045_GLYSO6.350e-1176.47Uncharacterized protein (Fragment) n=1 Tax=Glycine... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97589contigM-pyrifera_M_contig97589:412..546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816893.0514033-CDS-M-pyrifera_M_contig97589:411..5461622816893.0514033-CDS-M-pyrifera_M_contig97589:411..546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97589 412..546 +
1692278240.5293162-CDS-M-pyrifera_M_contig97589:411..5461692278240.5293162-CDS-M-pyrifera_M_contig97589:411..546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97589 412..546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97589.22480.1prot_M-pyrifera_M_contig97589.22480.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97589 412..546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97589.22480.1

>prot_M-pyrifera_M_contig97589.22480.1 ID=prot_M-pyrifera_M_contig97589.22480.1|Name=mRNA_M-pyrifera_M_contig97589.22480.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=45bp
MRSYQLTCTGSHQNSEVKRVWARVVLGWVTSWEVLVLHPFFLCF*
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mRNA from alignment at M-pyrifera_M_contig97589:412..546+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97589.22480.1 ID=mRNA_M-pyrifera_M_contig97589.22480.1|Name=mRNA_M-pyrifera_M_contig97589.22480.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=135bp|location=Sequence derived from alignment at M-pyrifera_M_contig97589:412..546+ (Macrocystis pyrifera P11B4 male)
ATGCGATCATACCAACTCACATGCACCGGATCCCATCAGAACTCCGAAGT TAAGCGAGTTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG TCCTCGTGTTGCATCCCTTCTTTTTGTGTTTTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97589:412..546+

>mRNA_M-pyrifera_M_contig97589.22480.1 ID=mRNA_M-pyrifera_M_contig97589.22480.1|Name=mRNA_M-pyrifera_M_contig97589.22480.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig97589:412..546+ (Macrocystis pyrifera P11B4 male)
ATGCGATCATACCAACTCACATGCACCGGATCCCATCAGAACTCCGAAGT
TAAGCGAGTTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG
TCCTCGTGTTGCATCCCTTCTTTTTGTGTTTTTGAATGCGATCATACCAA
CTCACATGCACCGGATCCCATCAGAACTCCGAAGTTAAGCGAGTTTGGGC
GAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCATC
CCTTCTTTTTGTGTTTTTGA
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