mRNA_M-pyrifera_M_contig97517.22463.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97517.22463.1
Unique NamemRNA_M-pyrifera_M_contig97517.22463.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig97517.22463.1 vs. uniprot
Match: A0A7S1CJI4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJI4_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.320e-5
Identity = 33/119 (27.73%), Postives = 56/119 (47.06%), Query Frame = 1 
Query:   76 VAAYWGNDDGLGWVEDRSVMFFTSENA-SILLPPGVGDNNCVKVSTRGL----------LESNPVCFAYVPPKISSISRDLFFAGEESVQVEVCAANLGDDISRIQMTIGGLDCRSLSW 399
            +  +W   DG+    D  +   TS NA +   P GVG ++ + V    +          + S PV FAY+PPK++ + +  F A  +  +V +   N G + + + ++IGGL C    W
Sbjct:    2 LVVFW---DGVALPSDAVIA--TSHNAVTFAAPEGVGTDHTMAVGIERIASGSTPASFHMVSEPVAFAYLPPKVTGVEKRPFDASRD--EVAIYGVNFGQEPTEVTVSIGGLPCEDAVW 113
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97517.22463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S1CJI4_9STRA1.320e-527.73Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97517contigM-pyrifera_M_contig97517:92..523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816892.2349136-CDS-M-pyrifera_M_contig97517:91..5231622816892.2349136-CDS-M-pyrifera_M_contig97517:91..523Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97517 92..523 +
1692278240.0033145-CDS-M-pyrifera_M_contig97517:91..5231692278240.0033145-CDS-M-pyrifera_M_contig97517:91..523Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97517 92..523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97517.22463.1prot_M-pyrifera_M_contig97517.22463.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97517 92..523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97517.22463.1

>prot_M-pyrifera_M_contig97517.22463.1 ID=prot_M-pyrifera_M_contig97517.22463.1|Name=mRNA_M-pyrifera_M_contig97517.22463.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
NHFPTEGGIEVRLFGEGLGVVPADLVAAYWGNDDGLGWVEDRSVMFFTSE
NASILLPPGVGDNNCVKVSTRGLLESNPVCFAYVPPKISSISRDLFFAGE
ESVQVEVCAANLGDDISRIQMTIGGLDCRSLSWIANEGCVVCET
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mRNA from alignment at M-pyrifera_M_contig97517:92..523+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97517.22463.1 ID=mRNA_M-pyrifera_M_contig97517.22463.1|Name=mRNA_M-pyrifera_M_contig97517.22463.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig97517:92..523+ (Macrocystis pyrifera P11B4 male)
AACCACTTTCCCACAGAAGGTGGCATTGAAGTGAGATTGTTTGGAGAAGG
ATTGGGAGTTGTTCCTGCTGACTTGGTCGCTGCCTATTGGGGAAATGATG
ATGGACTTGGATGGGTGGAAGATCGCTCTGTCATGTTCTTTACAAGTGAG
AATGCCAGCATTCTACTCCCCCCAGGAGTTGGAGACAACAATTGCGTCAA
AGTCTCCACCAGAGGATTGCTGGAAAGTAATCCCGTGTGCTTTGCATACG
TGCCACCCAAAATCTCTTCCATCTCGCGTGATTTGTTCTTTGCTGGAGAA
GAAAGTGTCCAAGTCGAGGTATGTGCAGCAAACTTGGGAGATGATATTTC
CAGAATCCAAATGACAATTGGAGGACTGGATTGTAGGTCCTTGTCTTGGA
TTGCAAATGAGGGTTGTGTGGTTTGTGAAACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97517:92..523+

>mRNA_M-pyrifera_M_contig97517.22463.1 ID=mRNA_M-pyrifera_M_contig97517.22463.1|Name=mRNA_M-pyrifera_M_contig97517.22463.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig97517:92..523+ (Macrocystis pyrifera P11B4 male)
AACCACTTTCCCACAGAAGGTGGCATTGAAGTGAGATTGTTTGGAGAAGG
ATTGGGAGTTGTTCCTGCTGACTTGGTCGCTGCCTATTGGGGAAATGATG
ATGGACTTGGATGGGTGGAAGATCGCTCTGTCATGTTCTTTACAAGTGAG
AATGCCAGCATTCTACTCCCCCCAGGAGTTGGAGACAACAATTGCGTCAA
AGTCTCCACCAGAGGATTGCTGGAAAGTAATCCCGTGTGCTTTGCATACG
TGCCACCCAAAATCTCTTCCATCTCGCGTGATTTGTTCTTTGCTGGAGAA
GAAAGTGTCCAAGTCGAGGTATGTGCAGCAAACTTGGGAGATGATATTTC
CAGAATCCAAATGACAATTGGAGGACTGGATTGTAGGTCCTTGTCTTGGA
TTGCAAATGAGGGTTGTGTGGTTTGTGAAACCAACCACTTTCCCACAGAA
GGTGGCATTGAAGTGAGATTGTTTGGAGAAGGATTGGGAGTTGTTCCTGC
TGACTTGGTCGCTGCCTATTGGGGAAATGATGATGGACTTGGATGGGTGG
AAGATCGCTCTGTCATGTTCTTTACAAGTGAGAATGCCAGCATTCTACTC
CCCCCAGGAGTTGGAGACAACAATTGCGTCAAAGTCTCCACCAGAGGATT
GCTGGAAAGTAATCCCGTGTGCTTTGCATACGTGCCACCCAAAATCTCTT
CCATCTCGCGTGATTTGTTCTTTGCTGGAGAAGAAAGTGTCCAAGTCGAG
GTATGTGCAGCAAACTTGGGAGATGATATTTCCAGAATCCAAATGACAAT
TGGAGGACTGGATTGTAGGTCCTTGTCTTGGATTGCAAATGAGGGTTGTG
TGGTTTGTGAAACC
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