mRNA_M-pyrifera_M_contig9728.22403.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig9728.22403.1
Unique Name	mRNA_M-pyrifera_M_contig9728.22403.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

[Close]

BLAST of mRNA_M-pyrifera_M_contig9728.22403.1 vs. uniprot
Match: D7FJ12_ECTSI (Ethanolamine-phosphate cytidylyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ12_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 3.620e-28
Identity = 67/99 (67.68%), Postives = 71/99 (71.72%), Query Frame = 1

Query:    1 REMIASLKICAAVHGTVDDNMAVHGIGGDNEEEPEGGDISPYEVPKEMEIFHEITSSSDLTVMEIVGRIEANQELFQRKYAXXXXXXXXXXXXXYKLKP 297
            REMIASL I AAVHGTVDDNMAVH  G +  +  EG   SPYEVPKE+ IFHEI SSS+LTVMEIVGRIEANQELFQRKYA             YKL P
Sbjct:  476 REMIASLNIGAAVHGTVDDNMAVHATGDEGGQGQEGTRFSPYEVPKEIGIFHEIKSSSNLTVMEIVGRIEANQELFQRKYAKKMAAEDEYYKNRYKLTP 574

[Close]

BLAST of mRNA_M-pyrifera_M_contig9728.22403.1 vs. uniprot
Match: A0A6H5KLC5_9PHAE (Ethanolamine-phosphate cytidylyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC5_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.170e-25
Identity = 65/102 (63.73%), Postives = 68/102 (66.67%), Query Frame = 1

Query:    1 REMIASLKICAAVHGTVDDNMAVHGIGGDNEEEPEGGDISPYEVPKEMEIFHEI---TSSSDLTVMEIVGRIEANQELFQRKYAXXXXXXXXXXXXXYKLKP 297
            REMIASL I AAVHGTVDDNMAVH  G +  +  E    SPYEVPK+M IFHEI     SS LTVMEIVGRIEANQELFQRKYA             YKL P
Sbjct:  426 REMIASLNISAAVHGTVDDNMAVHATGDEGGQGQEATKFSPYEVPKDMGIFHEIKRQVDSSTLTVMEIVGRIEANQELFQRKYAKKMAAEDEYYKNRYKLTP 527

[Close]

BLAST of mRNA_M-pyrifera_M_contig9728.22403.1 vs. uniprot
Match: A0A7S2V0A7_9STRA (Ethanolamine-phosphate cytidylyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0A7_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.100e-9
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 1

Query:    1 REMIASLKICAAVHGTVDDNMAVHGIGGDNEEEPEGGDI------SPYEVPKEMEIFHEITSSSDLTVMEIVGRIEANQELFQRK 237
            REMIASL ICA VHGTV+D +       D    P+ G          YEVP +M IFH+I SS DLT++ ++ RI+  Q++F +K
Sbjct:  397 REMIASLNICAVVHGTVNDGL-------DGRSTPKAGHAHAFTYEESYEVPTQMGIFHKIDSSIDLTLLGVMTRIQKQQDMFTKK 474

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig9728.22403.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig9728.22403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7FJ12_ECTSI	3.620e-28	67.68	Ethanolamine-phosphate cytidylyltransferase n=1 Ta...	[more]
A0A6H5KLC5_9PHAE	2.170e-25	63.73	Ethanolamine-phosphate cytidylyltransferase n=1 Ta...	[more]
A0A7S2V0A7_9STRA	4.100e-9	44.71	Ethanolamine-phosphate cytidylyltransferase n=1 Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig9728	contig	M-pyrifera_M_contig9728:9415..10649 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	117.9
Seed ortholog evalue	2.9e-24
Seed eggNOG ortholog	2880.D7FJ12
Preferred name	PCYT2
KEGG rclass	RC00002
KEGG ko	ko:K00967,ko:K01530
KEGG Reaction	R02038,R04247
KEGG Pathway	ko00440,ko00564,ko01100,map00440,map00564,map01100
KEGG Module	M00092
Hectar predicted targeting category	other localisation
GOs	GO:0003674,GO:0003824,GO:0004306,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005789,GO:0006066,GO:0006576,GO:0006629,GO:0006644,GO:0006646,GO:0006650,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009308,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016772,GO:0016779,GO:0019637,GO:0019867,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031984,GO:0032592,GO:0034641,GO:0042175,GO:0042439,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045017,GO:0046337,GO:0046474,GO:0046486,GO:0070567,GO:0071704,GO:0090407,GO:0098573,GO:0098588,GO:0098805,GO:0098827,GO:1901564,GO:1901576,GO:1901615
EggNOG free text desc.	cytidylyltransferase
EggNOG OGs	COG0615@1,KOG2803@2759
EC	2.7.7.14,3.6.3.1
COG Functional cat.	IM
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000
Exons	3
Model size	699
Cds size	306
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig9728.22403.1	prot_M-pyrifera_M_contig9728.22403.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig9728 9802..10643 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816889.2928402-UTR-M-pyrifera_M_contig9728:9414..9801	1622816889.2928402-UTR-M-pyrifera_M_contig9728:9414..9801	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig9728 9415..9801 -
1692278238.3252044-UTR-M-pyrifera_M_contig9728:9414..9801	1692278238.3252044-UTR-M-pyrifera_M_contig9728:9414..9801	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig9728 9415..9801 -
1622816889.3448405-UTR-M-pyrifera_M_contig9728:10643..10649	1622816889.3448405-UTR-M-pyrifera_M_contig9728:10643..10649	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig9728 10644..10649 -
1692278238.3707297-UTR-M-pyrifera_M_contig9728:10643..10649	1692278238.3707297-UTR-M-pyrifera_M_contig9728:10643..10649	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig9728 10644..10649 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816889.3057587-CDS-M-pyrifera_M_contig9728:9801..9946	1622816889.3057587-CDS-M-pyrifera_M_contig9728:9801..9946	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig9728 9802..9946 -
1692278238.3389344-CDS-M-pyrifera_M_contig9728:9801..9946	1692278238.3389344-CDS-M-pyrifera_M_contig9728:9801..9946	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig9728 9802..9946 -
1622816889.318718-CDS-M-pyrifera_M_contig9728:10261..10322	1622816889.318718-CDS-M-pyrifera_M_contig9728:10261..10322	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig9728 10262..10322 -
1692278238.3493805-CDS-M-pyrifera_M_contig9728:10261..10322	1692278238.3493805-CDS-M-pyrifera_M_contig9728:10261..10322	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig9728 10262..10322 -
1622816889.3326237-CDS-M-pyrifera_M_contig9728:10543..10643	1622816889.3326237-CDS-M-pyrifera_M_contig9728:10543..10643	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig9728 10544..10643 -
1692278238.359663-CDS-M-pyrifera_M_contig9728:10543..10643	1692278238.359663-CDS-M-pyrifera_M_contig9728:10543..10643	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig9728 10544..10643 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig9728:9415..10649-
coding sequence from alignment at M-pyrifera_M_contig9728:9415..10649-

protein sequence of mRNA_M-pyrifera_M_contig9728.22403.1

>prot_M-pyrifera_M_contig9728.22403.1 ID=prot_M-pyrifera_M_contig9728.22403.1|Name=mRNA_M-pyrifera_M_contig9728.22403.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MIASLKICAAVHGTVDDNMAVHGIGGDNEEEPEGGDISPYEVPKEMEIFH
EITSSSDLTVMEIVGRIEANQELFQRKYAKKMAAEDEYYKKRYKLKPNAR
A*

mRNA from alignment at M-pyrifera_M_contig9728:9415..10649-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig9728.22403.1 ID=mRNA_M-pyrifera_M_contig9728.22403.1|Name=mRNA_M-pyrifera_M_contig9728.22403.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1235bp|location=Sequence derived from alignment at M-pyrifera_M_contig9728:9415..10649- (Macrocystis pyrifera P11B4 male)
AGGGAGATGATCGCTTCGCTCAAGATTTGTGCCGCTGTACATGGAACCGT
GGATGACAATATGGCAGTGCACGGAATCGGGGGTGACAACGAGGAGGAGC
CAGAGGGTGAGGGAGGACAAGCTAAAGGTCCTTATGCGAATTGCTATGGT
AGATACGGGACCCGTTGGTGTCGACAGCGAGTATGGTATTGCCACCCACA
GGCGTACTGCATATATGCTGTCTTTGAGAACAACCACCTCCGGTTGATTG
CCGCGGCTTTCACGAATGCGGTGGCTGATGAACATGCGCCCGCTTCCCCA
TTGTCTACGGTGTGTACAATATTGCAGGTGGTGACATCTCTCCGTACGAA
GTGCCAAAGGAAATGGAAATATTCCATGAGATAACGAGGCGAGTGTTGCC
TACGGCTGGAGCCTAGTCTTTGGTTGGGTTGTCTTTCGTCATCGTTGTTT
TTTTTTTTTGACCTGTTGACAGCACCTGTGCAAATTTGATGATCGGCATG
TATTGTGCGTGAATTTCACTGCGCTCTGGACCAGTGAGCAGCTCTACAAA
CCTGACGATAAGTTGAGATTTTGGGGCGCATCGAGCCTTTCGCCGGCCAG
CCAAAAAGACACCGATGCAAGATCGAGACTCCTGTGTCAAAGTCACTCAC
CCAACCGTTGTAAATGTGCGTTCATTTCTATGTGCTTCGGCGTCCTTGAA
CAGCTCTTCAGACCTGACTGTCATGGAGATTGTGGGGCGCATCGAGGCCA
ACCAAGAACTATTTCAGCGAAAGTACGCAAAGAAGATGGCAGCAGAAGAC
GAGTATTACAAAAAGCGGTATAAGCTCAAGCCGAATGCACGTGCATGAGC
AAAATATGTGCTGAGCACTCAAGACCCAGGGGAAACTGATCCGATGTGTG
TTGTCAGCTGCTGAAGTTTCAAGATAGATGTTCAAGTTTCAGAAAATGGT
AGTTAACTCCCGCTCCTTGGTGAAGCCAAACTCGATGACGTGGTTTCGTT
ATATTATATATCCGTGGTACGTACCAGGAACTTCTTGCGTTGTCTTAAGT
CACACGTTTTGTGTGTTTTGACGGGGAGTACTCCACACACAAGTATTCGT
GCAGTCGGCAGCATGCGCTAAAAGTTATTGGCAAAGTGCAGAGCTGCGTA
AAGCGCCACCAAGCATTGGCGATTGGGGAAGGACGATTTTGATAATTGGC
GCATCTGGGTTGCGCTCATTGTGTTTAGCTTTCCG

Coding sequence (CDS) from alignment at M-pyrifera_M_contig9728:9415..10649-

>mRNA_M-pyrifera_M_contig9728.22403.1 ID=mRNA_M-pyrifera_M_contig9728.22403.1|Name=mRNA_M-pyrifera_M_contig9728.22403.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig9728:9415..10649- (Macrocystis pyrifera P11B4 male)
ATGATCGCTTCGCTCAAGATTTGTGCCGCTGTACATGGAACCGTGGATGA
CAATATGGCAGTGCACGGAATCGGGGGTGACAACGAGGAGGAGCCAGAGG
ATGATCGCTTCGCTCAAGATTTGTGCCGCTGTACATGGAACCGTGGATGA
CAATATGGCAGTGCACGGAATCGGGGGTGACAACGAGGAGGAGCCAGAGG
GTGGTGACATCTCTCCGTACGAAGTGCCAAAGGAAATGGAAATATTCCAT
GAGATAACGAGGTGGTGACATCTCTCCGTACGAAGTGCCAAAGGAAATGG
AAATATTCCATGAGATAACGAGCTCTTCAGACCTGACTGTCATGGAGATT
GTGGGGCGCATCGAGGCCAACCAAGAACTATTTCAGCGAAAGTACGCAAA
GAAGATGGCAGCAGAAGACGAGTATTACAAAAAGCGGTATAAGCTCAAGC
CGAATGCACGTGCATGACTCTTCAGACCTGACTGTCATGGAGATTGTGGG
GCGCATCGAGGCCAACCAAGAACTATTTCAGCGAAAGTACGCAAAGAAGA
TGGCAGCAGAAGACGAGTATTACAAAAAGCGGTATAAGCTCAAGCCGAAT
GCACGTGCATGA