mRNA_M-pyrifera_M_contig110641.2235.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110641.2235.1
Unique NamemRNA_M-pyrifera_M_contig110641.2235.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Match: F2UA69_SALR5 (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UA69_SALR5)

HSP 1 Score: 72.4 bits (176), Expect = 3.810e-15
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 SSSDTQLFLNMFRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDDATCENVD 162
            SS+   LF + F+TL GKT+VVELKNDL I+GTL SVDQFLN KLDD T  NVD
Sbjct:   13 SSTIKMLFTSFFKTLVGKTVVVELKNDLSIQGTLTSVDQFLNIKLDDITVGNVD 66
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BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Match: B8N5Y8_ASPFN (U6 snRNA-associated Sm-like protein LSm2 n=47 Tax=Eurotiales TaxID=5042 RepID=B8N5Y8_ASPFN)

HSP 1 Score: 64.3 bits (155), Expect = 4.130e-12
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:   19 LFLNMFRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDDATCENVD 162
            LF + F+TLT +T+++ELKND+RI+GTL SVDQ+LN KLDD    ++D
Sbjct:    2 LFFSFFKTLTNQTVIIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLD 49
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BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Match: A0A0G4IYK4_PLABS (Sm domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IYK4_PLABS)

HSP 1 Score: 64.7 bits (156), Expect = 6.600e-12
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   22 FLNMFRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDDA 144
            F + F+TLTGK +V+ELKNDLR+KG LHSVDQ+LN KLD+ 
Sbjct:   41 FFSFFKTLTGKGVVIELKNDLRLKGVLHSVDQYLNIKLDEV 81
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BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Match: A0A0L0EYE4_9EUKA (Sm domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0EYE4_9EUKA)

HSP 1 Score: 62.8 bits (151), Expect = 7.040e-12
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   19 LFLNMFRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDDATCENVD 162
            +F + F+TL    +VVELKN+L+I+G LHSVDQFLN KL D T ENV+
Sbjct:    1 MFYSFFKTLVDSDVVVELKNELKIQGKLHSVDQFLNIKLKDITVENVE 48
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BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Match: A0A1D8PSP7_CANAL (U6 snRNA-associated Sm-like protein LSm2 n=5 Tax=Candida TaxID=1535326 RepID=A0A1D8PSP7_CANAL)

HSP 1 Score: 63.5 bits (153), Expect = 7.900e-12
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   19 LFLNMFRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDDATCEN 156
            LF + F+TL  + + VELKND+ IKGTL SVDQFLN KLD+ TC N
Sbjct:    2 LFFSFFKTLVDQEVTVELKNDIEIKGTLKSVDQFLNLKLDNITCTN 47
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BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Match: C5M2V1_CANTT (U6 snRNA-associated Sm-like protein LSm2 n=5 Tax=Candida TaxID=1535326 RepID=C5M2V1_CANTT)

HSP 1 Score: 63.5 bits (153), Expect = 7.900e-12
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   19 LFLNMFRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDDATCEN 156
            LF + F+TL  + + VELKND+ IKGTL SVDQFLN KLD+ TC N
Sbjct:    2 LFFSFFKTLVDQEVTVELKNDMEIKGTLKSVDQFLNLKLDNITCTN 47
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BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Match: A0A1M8A4H9_MALS4 (U6 snRNA-associated Sm-like protein LSm2 n=6 Tax=Malassezia TaxID=55193 RepID=A0A1M8A4H9_MALS4)

HSP 1 Score: 63.5 bits (153), Expect = 7.900e-12
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   19 LFLNMFRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDD 141
            L  + F+TLTG+T+ VELKNDL I+GTL SVDQFLNFKLDD
Sbjct:    2 LMFSAFKTLTGQTVTVELKNDLAIQGTLKSVDQFLNFKLDD 42
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BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Match: A0A2H2IRM7_CAEJA (Sm domain-containing protein n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2IRM7_CAEJA)

HSP 1 Score: 63.2 bits (152), Expect = 8.760e-12
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   19 LFLNMFRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDDATCENVD 162
            LF + F++L GK +VVELKNDL I GTLHSVDQ+LN KL D T  + D
Sbjct:    2 LFFSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDITVSDTD 49
[Close]
BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Match: A0A5J4YY05_PORPP (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YY05_PORPP)

HSP 1 Score: 63.5 bits (153), Expect = 9.140e-12
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:   19 LFLNMFRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDDATCENVD 162
            LF ++F+TL GK +VVELKNDL I+G LHSVDQ+LN K++D T  + D
Sbjct:    2 LFFSVFKTLVGKEVVVELKNDLTIRGRLHSVDQYLNVKIEDITVLDAD 49
[Close]
BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Match: B0XUH2_ASPFC (U6 snRNA-associated Sm-like protein LSm2 n=8 Tax=Aspergillus subgen. Fumigati TaxID=2720872 RepID=B0XUH2_ASPFC)

HSP 1 Score: 63.2 bits (152), Expect = 9.910e-12
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:   19 LFLNMFRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDDATCENVD 162
            LF + F+TLT +T+ +ELKND+RI+GTL SVDQ+LN KLDD    ++D
Sbjct:    2 LFFSFFKTLTNQTVTIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLD 49
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F2UA69_SALR53.810e-1568.52U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=S... [more]
B8N5Y8_ASPFN4.130e-1258.33U6 snRNA-associated Sm-like protein LSm2 n=47 Tax=... [more]
A0A0G4IYK4_PLABS6.600e-1268.29Sm domain-containing protein n=1 Tax=Plasmodiophor... [more]
A0A0L0EYE4_9EUKA7.040e-1260.42Sm domain-containing protein n=1 Tax=Sphaeroforma ... [more]
A0A1D8PSP7_CANAL7.900e-1263.04U6 snRNA-associated Sm-like protein LSm2 n=5 Tax=C... [more]
C5M2V1_CANTT7.900e-1263.04U6 snRNA-associated Sm-like protein LSm2 n=5 Tax=C... [more]
A0A1M8A4H9_MALS47.900e-1273.17U6 snRNA-associated Sm-like protein LSm2 n=6 Tax=M... [more]
A0A2H2IRM7_CAEJA8.760e-1262.50Sm domain-containing protein n=1 Tax=Caenorhabditi... [more]
A0A5J4YY05_PORPP9.140e-1260.42U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=P... [more]
B0XUH2_ASPFC9.910e-1258.33U6 snRNA-associated Sm-like protein LSm2 n=8 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110641contigM-pyrifera_M_contig110641:436..597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score67.8
Seed ortholog evalue1.5e-09
Seed eggNOG ortholog946362.XP_004993925.1
Preferred nameLSM2
KEGG koko:K12621,ko:K14998
KEGG TC3.D.4.8
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000244,GO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005688,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017016,GO:0017069,GO:0017070,GO:0017160,GO:0019222,GO:0019439,GO:0019899,GO:0019900,GO:0019901,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031267,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034655,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0048519,GO:0050789,GO:0051020,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1990726,GO:1990904
EggNOG free text desc.RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
EggNOG OGs3A5UF@33154,COG1958@1,KOG3448@2759
COG Functional cat.A
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03029,ko03041
Exons1
Model size162
Cds size132
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.2629573-UTR-M-pyrifera_M_contig110641:435..4651622815618.2629573-UTR-M-pyrifera_M_contig110641:435..465Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110641 436..465 +
1692277490.015788-UTR-M-pyrifera_M_contig110641:435..4651692277490.015788-UTR-M-pyrifera_M_contig110641:435..465Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110641 436..465 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.2736602-CDS-M-pyrifera_M_contig110641:465..5971622815618.2736602-CDS-M-pyrifera_M_contig110641:465..597Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110641 466..597 +
1692277490.0296006-CDS-M-pyrifera_M_contig110641:465..5971692277490.0296006-CDS-M-pyrifera_M_contig110641:465..597Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110641 466..597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110641.2235.1prot_M-pyrifera_M_contig110641.2235.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110641 466..597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110641.2235.1

>prot_M-pyrifera_M_contig110641.2235.1 ID=prot_M-pyrifera_M_contig110641.2235.1|Name=mRNA_M-pyrifera_M_contig110641.2235.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=44bp
MFRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDDATCENVD
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mRNA from alignment at M-pyrifera_M_contig110641:436..597+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110641.2235.1 ID=mRNA_M-pyrifera_M_contig110641.2235.1|Name=mRNA_M-pyrifera_M_contig110641.2235.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig110641:436..597+ (Macrocystis pyrifera P11B4 male)
TCCTCTTCCGACACGCAGCTCTTTCTGAACATGTTTCGAACCCTGACTGG
GAAAACCATTGTTGTGGAGCTGAAGAACGACCTGAGGATCAAAGGCACTC
TGCATTCGGTCGACCAATTCCTCAACTTCAAATTGGACGATGCCACATGC
GAAAACGTTGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110641:436..597+

>mRNA_M-pyrifera_M_contig110641.2235.1 ID=mRNA_M-pyrifera_M_contig110641.2235.1|Name=mRNA_M-pyrifera_M_contig110641.2235.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig110641:436..597+ (Macrocystis pyrifera P11B4 male)
ATGTTTCGAACCCTGACTGGGAAAACCATTGTTGTGGAGCTGAAGAACGA
CCTGAGGATCAAAGGCACTCTGCATTCGGTCGACCAATTCCTCAACTTCA
AATTGGACGATGCCACATGCGAAAACGTTGACATGTTTCGAACCCTGACT
GGGAAAACCATTGTTGTGGAGCTGAAGAACGACCTGAGGATCAAAGGCAC
TCTGCATTCGGTCGACCAATTCCTCAACTTCAAATTGGACGATGCCACAT
GCGAAAACGTTGAC
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