mRNA_M-pyrifera_M_contig96639.22254.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig96639.22254.1
Unique NamemRNA_M-pyrifera_M_contig96639.22254.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Match: D7G8W9_ECTSI (CPSF_A domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W9_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 1.400e-31
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 1
Query:    4 KLTRRRTRGNLRGGARYCLLAGTMDGGLGAILPVDERVFRRLYALQGIMCNALGHTGAANPR 189
            KLTRRRTRGNLR GARYCLLAGT+DGGLGA+LPVDERVFRRLYALQGIM NALGH GAANPR
Sbjct:  131 KLTRRRTRGNLRDGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 192          
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Match: K8YVP3_NANGC (Cleavage and polyadenylation specificity factor subunit 1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YVP3_NANGC)

HSP 1 Score: 67.0 bits (162), Expect = 2.360e-11
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   28 GNLRGGARYCLLAGTMDGGLGAILPVDERVFRRLYALQGIMCNALGHTGAANPRWVLFVSA 210
            G  R G R  ++ G+++GG+GA++PV+E+V+RRLYALQ +M NAL H GA NPR    V A
Sbjct:  280 GAYRAGVRV-MVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEA 339          
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Match: A0A4D9CM95_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CM95_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.570e-11
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   28 GNLRGGARYCLLAGTMDGGLGAILPVDERVFRRLYALQGIMCNALGHTGAANPRWVLFVSA 210
            G  R G R  ++ G+++GG+GA++PV+E+V+RRLYALQ +M NAL H GA NPR    V A
Sbjct: 1836 GAYRAGVRV-MVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEA 1895          
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Match: A0A7S1BI36_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BI36_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.630e-10
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   49 RYCLLAGTMDGGLGAILPVDERVFRRLYALQGIMCNALGHTGAANPR-WVLF 201
            R+ +  GT+DGG GA+ PV+ER FRRLYALQG++ NAL  +GA N R W LF
Sbjct:  430 RFGVHFGTVDGGFGAVFPVNERTFRRLYALQGVVGNALQQSGALNVRGWRLF 481          
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Match: A0A7S2D6V7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D6V7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.720e-10
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1
Query:   49 RYCLLAGTMDGGLGAILPVDERVFRRLYALQGIMCNALGHTGAANPR 189
            R+     ++DG  GA++PVDE  FRRLYALQGI+ NAL HT A NPR
Sbjct:  116 RFASWFASLDGAAGAVVPVDEHSFRRLYALQGILVNALPHTAALNPR 162          
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Match: A0A7S2FC30_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FC30_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.960e-10
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 1
Query:   67 GTMDGGLGAILPVDERVFRRLYALQGIMCNALGHTGAANPR 189
            G++DG  G I+P DER F+RLYALQGI+ NAL H  A NPR
Sbjct:   15 GSLDGSAGVIVPTDERPFKRLYALQGILINALPHVAALNPR 55          
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Match: A0A7S2D575_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D575_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 4.120e-10
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1
Query:   49 RYCLLAGTMDGGLGAILPVDERVFRRLYALQGIMCNALGHTGAANPR 189
            R+     ++DG  GA++PVDE  FRRLYALQGI+ NAL HT A NPR
Sbjct:  350 RFASWFASLDGAAGAVVPVDEHSFRRLYALQGILVNALPHTAALNPR 396          
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Match: A0A835Z873_9STRA (Cleavage/polyadenylation specificity factor, A subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z873_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.170e-10
Identity = 28/57 (49.12%), Postives = 35/57 (61.40%), Query Frame = 1
Query:   19 RTRGNLRGGARYCLLAGTMDGGLGAILPVDERVFRRLYALQGIMCNALGHTGAANPR 189
            R R N     R+    G +DG +  + P++ER FRRLYALQG+MCNAL H    NPR
Sbjct:  151 RLRNNKLNAPRFGAAVGGLDGSVALLAPLEERAFRRLYALQGVMCNALEHGAGVNPR 207          
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Match: A0A6G0WGC0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGC0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.810e-8
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 1
Query:   52 YCLLAGTMDGGLGAILPVDERVFRRLYALQGIMCNALGHTGAANPR 189
            Y  L  T +GGLG ++PV ER+FRRLY LQ IM NAL      NPR
Sbjct: 1372 YVTLLATAEGGLGVLIPVQERLFRRLYTLQSIMINALPQNAGLNPR 1417          
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Match: A0A397FV89_9STRA (CPSF_A domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FV89_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.250e-8
Identity = 24/46 (52.17%), Postives = 29/46 (63.04%), Query Frame = 1
Query:   52 YCLLAGTMDGGLGAILPVDERVFRRLYALQGIMCNALGHTGAANPR 189
            Y  L  T +GGLG ++PV ER+FRR+Y LQ IM N L      NPR
Sbjct:   51 YVTLLATAEGGLGVLIPVQERLFRRMYTLQSIMINVLPQNAGLNPR 96          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8W9_ECTSI1.400e-3191.94CPSF_A domain-containing protein n=1 Tax=Ectocarpu... [more]
K8YVP3_NANGC2.360e-1152.46Cleavage and polyadenylation specificity factor su... [more]
A0A4D9CM95_9STRA2.570e-1152.46Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1BI36_9STRA1.630e-1059.62Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2D6V7_9STRA1.720e-1059.57Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2FC30_9STRA2.960e-1063.41Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2D575_9STRA4.120e-1059.57Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835Z873_9STRA5.170e-1049.12Cleavage/polyadenylation specificity factor, A sub... [more]
A0A6G0WGC0_9STRA1.810e-856.52Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A397FV89_9STRA3.250e-852.17CPSF_A domain-containing protein n=7 Tax=Aphanomyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig96639contigM-pyrifera_M_contig96639:287..496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue3.9e-25
Seed eggNOG ortholog2880.D7G8W9
KEGG koko:K14401
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG5161@1,KOG1896@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021
Exons1
Model size210
Cds size210
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816881.2204585-CDS-M-pyrifera_M_contig96639:286..4961622816881.2204585-CDS-M-pyrifera_M_contig96639:286..496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96639 287..496 +
1692278233.6246412-CDS-M-pyrifera_M_contig96639:286..4961692278233.6246412-CDS-M-pyrifera_M_contig96639:286..496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96639 287..496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig96639.22254.1prot_M-pyrifera_M_contig96639.22254.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig96639 287..496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig96639.22254.1

>prot_M-pyrifera_M_contig96639.22254.1 ID=prot_M-pyrifera_M_contig96639.22254.1|Name=mRNA_M-pyrifera_M_contig96639.22254.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
MKLTRRRTRGNLRGGARYCLLAGTMDGGLGAILPVDERVFRRLYALQGIM
CNALGHTGAANPRWVLFVSA
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mRNA from alignment at M-pyrifera_M_contig96639:287..496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig96639.22254.1 ID=mRNA_M-pyrifera_M_contig96639.22254.1|Name=mRNA_M-pyrifera_M_contig96639.22254.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig96639:287..496+ (Macrocystis pyrifera P11B4 male)
ATGAAGCTGACAAGAAGACGGACGCGCGGCAACCTGCGAGGCGGCGCTCG CTACTGCCTCCTGGCCGGGACAATGGACGGAGGGCTGGGAGCAATCCTTC CCGTCGACGAGCGCGTATTCCGGAGGCTGTACGCGCTTCAGGGGATCATG TGCAACGCTCTAGGTCACACCGGAGCCGCCAACCCGAGGTGGGTGCTTTT TGTATCAGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig96639:287..496+

>mRNA_M-pyrifera_M_contig96639.22254.1 ID=mRNA_M-pyrifera_M_contig96639.22254.1|Name=mRNA_M-pyrifera_M_contig96639.22254.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig96639:287..496+ (Macrocystis pyrifera P11B4 male)
ATGAAGCTGACAAGAAGACGGACGCGCGGCAACCTGCGAGGCGGCGCTCG
CTACTGCCTCCTGGCCGGGACAATGGACGGAGGGCTGGGAGCAATCCTTC
CCGTCGACGAGCGCGTATTCCGGAGGCTGTACGCGCTTCAGGGGATCATG
TGCAACGCTCTAGGTCACACCGGAGCCGCCAACCCGAGGTGGGTGCTTTT
TGTATCAGCTATGAAGCTGACAAGAAGACGGACGCGCGGCAACCTGCGAG
GCGGCGCTCGCTACTGCCTCCTGGCCGGGACAATGGACGGAGGGCTGGGA
GCAATCCTTCCCGTCGACGAGCGCGTATTCCGGAGGCTGTACGCGCTTCA
GGGGATCATGTGCAACGCTCTAGGTCACACCGGAGCCGCCAACCCGAGGT
GGGTGCTTTTTGTATCAGCT
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