mRNA_M-pyrifera_M_contig110584.2214.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110584.2214.1
Unique NamemRNA_M-pyrifera_M_contig110584.2214.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig110584.2214.1 vs. uniprot
Match: A0A6H5KSC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC2_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 2.340e-6
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 LLQAVDEDEIGTHAKGAKDRVVKASNDTLADIQAALTE 114
            LL AVDED+IGTHA GAKDRVV A   TLADI  + T+
Sbjct:   57 LLAAVDEDQIGTHAVGAKDRVVAAVETTLADINDSATK 94
[Close]
BLAST of mRNA_M-pyrifera_M_contig110584.2214.1 vs. uniprot
Match: A0A6H5KNS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNS5_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 3.310e-6
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 LLQAVDEDEIGTHAKGAKDRVVKASNDTLADIQAALTE 114
            LL AVDED+IGT+A GAKDRVV AS  TLADI  A T+
Sbjct:  534 LLGAVDEDKIGTYAIGAKDRVVAASETTLADIDDASTK 571
[Close]
BLAST of mRNA_M-pyrifera_M_contig110584.2214.1 vs. uniprot
Match: D7G0G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G6_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 2.180e-5
Identity = 25/35 (71.43%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 LLQAVDEDEIGTHAKGAKDRVVKASNDTLADIQAA 105
            LL AVDED+IG HA GAKDRVV A   TLADI  A
Sbjct:  397 LLAAVDEDQIGAHAVGAKDRVVAAVETTLADINDA 431
[Close]
BLAST of mRNA_M-pyrifera_M_contig110584.2214.1 vs. uniprot
Match: D7G4Q7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q7_ECTSI)

HSP 1 Score: 48.1 bits (113), Expect = 2.970e-5
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 LLQAVDEDEIGTHAKGAKDRVVKASNDTLADIQAALTE 114
            LL AVDED+IGT+A G K+RVV AS  TLADI  A T+
Sbjct:  874 LLGAVDEDKIGTYAIGVKERVVAASETTLADIDDAATK 911
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110584.2214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KSC2_9PHAE2.340e-668.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNS5_9PHAE3.310e-671.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0G6_ECTSI2.180e-571.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4Q7_ECTSI2.970e-565.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110584contigM-pyrifera_M_contig110584:324..440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.0458572-CDS-M-pyrifera_M_contig110584:323..4401622815617.0458572-CDS-M-pyrifera_M_contig110584:323..440Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110584 324..440 -
1692277489.4218917-CDS-M-pyrifera_M_contig110584:323..4401692277489.4218917-CDS-M-pyrifera_M_contig110584:323..440Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110584 324..440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110584.2214.1prot_M-pyrifera_M_contig110584.2214.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110584 324..440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110584.2214.1

>prot_M-pyrifera_M_contig110584.2214.1 ID=prot_M-pyrifera_M_contig110584.2214.1|Name=mRNA_M-pyrifera_M_contig110584.2214.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=39bp
LLQAVDEDEIGTHAKGAKDRVVKASNDTLADIQAALTE*
back to top

mRNA from alignment at M-pyrifera_M_contig110584:324..440-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110584.2214.1 ID=mRNA_M-pyrifera_M_contig110584.2214.1|Name=mRNA_M-pyrifera_M_contig110584.2214.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=117bp|location=Sequence derived from alignment at M-pyrifera_M_contig110584:324..440- (Macrocystis pyrifera P11B4 male)
TTGCTGCAGGCGGTGGATGAAGACGAGATCGGGACACACGCCAAGGGGGC
AAAGGACCGCGTCGTGAAGGCGTCGAATGATACGCTCGCCGACATTCAAG
CTGCCTTGACCGAGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig110584:324..440-

>mRNA_M-pyrifera_M_contig110584.2214.1 ID=mRNA_M-pyrifera_M_contig110584.2214.1|Name=mRNA_M-pyrifera_M_contig110584.2214.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig110584:324..440- (Macrocystis pyrifera P11B4 male)
TTGCTGCAGGCGGTGGATGAAGACGAGATCGGGACACACGCCAAGGGGGC
AAAGGACCGCGTCGTGAAGGCGTCGAATGATACGCTCGCCGACATTCAAG
CTGCCTTGACCGAGTGATTGCTGCAGGCGGTGGATGAAGACGAGATCGGG
ACACACGCCAAGGGGGCAAAGGACCGCGTCGTGAAGGCGTCGAATGATAC
GCTCGCCGACATTCAAGCTGCCTTGACCGAGTGA
back to top