mRNA_M-pyrifera_M_contig94708.21849.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94708.21849.1
Unique NamemRNA_M-pyrifera_M_contig94708.21849.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig94708.21849.1 vs. uniprot
Match: A0A7S4IKL7_9EUKA (tRNA 4-demethylwyosine synthase (AdoMet-dependent) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IKL7_9EUKA)

HSP 1 Score: 406 bits (1044), Expect = 1.330e-135
Identity = 190/233 (81.55%), Postives = 206/233 (88.41%), Query Frame = 1
Query:   13 KRMLSTTHVKTLQKQGYKIIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIASHLCMEMTPSMACANKCVFCWRHHKNPVTREWRWEQDEPHFIIDQAVAKHRQMIKSCKGIPGVVPERYEEAFQPRHCALSLVGEPIIYPEINAFLRYMHEQRISSFMVTNAQFPAEISSLVPVTQLYVSIDAGNEEDLRKIDRPLFVDFWQRFLDSIAALSAKGQRTVFRLTLVKDYNMDSV 711
            K MLS+TH  TLQKQGYKIIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIASH CMEMTPSMACANKCVFCWRHHKNPVTREWRW  D    II+ A+ +H++MIK+C+GIPGV+PER+EE F  RHCALSLVGEPIIYPEIN FLR +H + ISSFMVTNAQFP +I  LVPVTQLYVSIDA  EE L+KIDRPLFVDFWQRFLDSI ALSAKGQRTVFRLTLVKD+NMD +
Sbjct:  315 KEMLSSTHKLTLQKQGYKIIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIASHRCMEMTPSMACANKCVFCWRHHKNPVTREWRWITDGAEMIIEGAIERHKKMIKTCRGIPGVIPERFEEGFNVRHCALSLVGEPIIYPEINEFLRMLHGKGISSFMVTNAQFPDKIEELVPVTQLYVSIDAPTEESLKKIDRPLFVDFWQRFLDSIRALSAKGQRTVFRLTLVKDWNMDEI 547          
BLAST of mRNA_M-pyrifera_M_contig94708.21849.1 vs. uniprot
Match: A0A7S3DFP5_9EUKA (tRNA 4-demethylwyosine synthase (AdoMet-dependent) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DFP5_9EUKA)

HSP 1 Score: 372 bits (955), Expect = 2.020e-122
Identity = 171/235 (72.77%), Postives = 198/235 (84.26%), Query Frame = 1
Query:    7 QAKRMLSTTHVKTLQKQGYKIIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIASHLCMEMTPSMACANKCVFCWRHHKNPVTREWRWEQDEPHFIIDQAVAKHRQMIKSCKGIPGVVPERYEEAFQPRHCALSLVGEPIIYPEINAFLRYMHEQRISSFMVTNAQFPAEISSLVPVTQLYVSIDAGNEEDLRKIDRPLFVDFWQRFLDSIAALSAKGQRTVFRLTLVKDYNMDSV 711
            +AK M++ +  K L KQGYKIIGSHSGVKLCRWTK+MLRGRGGCYKHTFYGI+S  CMEMTPS+ACANKCVFCWRHHKNPV REWRW+ D+P  +ID A+ +HR M+K  KG+PGV  +RYEE+   +HCALSLVGEPIIYP IN F+ Y+HE+ ISSF+VTNAQFP  I++L PVTQLYVSIDA NEEDL++IDRPLF DFWQRFLDSI AL   GQRTVFRLTLVK +NMD +
Sbjct:  319 EAKEMVTESLRKNLTKQGYKIIGSHSGVKLCRWTKAMLRGRGGCYKHTFYGISSFQCMEMTPSLACANKCVFCWRHHKNPVGREWRWKADDPKMLIDGAIEQHRGMMKQMKGVPGVKKDRYEESMNVKHCALSLVGEPIIYPHINEFVGYLHEKNISSFLVTNAQFPELITALPPVTQLYVSIDASNEEDLKRIDRPLFTDFWQRFLDSIEALGKTGQRTVFRLTLVKGWNMDEL 553          
BLAST of mRNA_M-pyrifera_M_contig94708.21849.1 vs. uniprot
Match: A0A4P9YNJ0_ROZAC (Tyw1 protein (Fragment) n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A4P9YNJ0_ROZAC)

HSP 1 Score: 356 bits (913), Expect = 3.160e-120
Identity = 160/235 (68.09%), Postives = 197/235 (83.83%), Query Frame = 1
Query:    7 QAKRMLSTTHVKTLQKQGYKIIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIASHLCMEMTPSMACANKCVFCWRHHKNPVTREWRWEQDEPHFIIDQAVAKHRQMIKSCKGIPGVVPERYEEAFQPRHCALSLVGEPIIYPEINAFLRYMHEQRISSFMVTNAQFPAEISSLVPVTQLYVSIDAGNEEDLRKIDRPLFVDFWQRFLDSIAALSAKGQRTVFRLTLVKDYNMDSV 711
            + K M++    ++LQKQGYKIIGSHSGVK+CRWTKSMLRGRGGCYKHTFYGI SH CME TPS+ACANKCVFCWRHH NPV  EW+W+ D   F+++ A+  H++MIK  KG+PGV  ER +EAF+ +HCALSLVGEPI+YPEIN F+  +H++RISSF+VTNAQFP  I+SLVPVTQLYVS+DA  +E L+KIDRPLF DFW+RFL S++ LS KGQRTV+RLTLVKD+N++ +
Sbjct:    1 EVKEMVTPIVRESLQKQGYKIIGSHSGVKICRWTKSMLRGRGGCYKHTFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGTEWKWKMDNAEFVLNGAIENHQKMIKQMKGVPGVGQERMDEAFEIKHCALSLVGEPIMYPEINQFVTLLHQKRISSFLVTNAQFPELITSLVPVTQLYVSVDAATKESLKKIDRPLFKDFWERFLASLSELSKKGQRTVYRLTLVKDFNVNEL 235          
BLAST of mRNA_M-pyrifera_M_contig94708.21849.1 vs. uniprot
Match: A0A498LF57_LABRO (S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase isoform X1 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498LF57_LABRO)

HSP 1 Score: 353 bits (907), Expect = 4.210e-120
Identity = 160/223 (71.75%), Postives = 185/223 (82.96%), Query Frame = 1
Query:   46 LQKQGYKIIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIASHLCMEMTPSMACANKCVFCWRHHKNPVTREWRWEQDEPHFIIDQAVAKHRQMIKSCKGIPGVVPERYEEAFQPRHCALSLVGEPIIYPEINAFLRYMHEQRISSFMVTNAQFPAEISSLVPVTQLYVSIDAGNEEDLRKIDRPLFVDFWQRFLDSIAALSAKGQRTVFRLTLVKDYNMDSVR 714
            L KQGYK+IGSHSGVKLCRWTKSMLRGRGGCYKHTFYGI SH CME TPS+ACANKCVFCWRHH NPV  EWRW+ D    II +AV  HR MI+  +G+PGV PER+EE    +HCALSLVGEPI+YPEIN+FLR +H+Q ISSF+VTNAQFP EI +LVPVTQLYVS+DA  ++ L+KIDRPLF DFWQRFLDS+  L  K QRTV+RLTLVK +N+D ++
Sbjct:   78 LTKQGYKLIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGTEWRWKMDPAEKIIQEAVENHRNMIRQFRGVPGVRPERFEEGLTVKHCALSLVGEPIMYPEINSFLRLLHQQNISSFLVTNAQFPEEIRNLVPVTQLYVSVDASTKDSLKKIDRPLFKDFWQRFLDSLKELGEKQQRTVYRLTLVKAWNVDELK 300          
BLAST of mRNA_M-pyrifera_M_contig94708.21849.1 vs. uniprot
Match: A0A7S0E466_9CRYP (tRNA 4-demethylwyosine synthase (AdoMet-dependent) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E466_9CRYP)

HSP 1 Score: 360 bits (925), Expect = 2.730e-119
Identity = 162/233 (69.53%), Postives = 193/233 (82.83%), Query Frame = 1
Query:   13 KRMLSTTHVKTLQKQGYKIIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIASHLCMEMTPSMACANKCVFCWRHHKNPVTREWRWEQDEPHFIIDQAVAKHRQMIKSCKGIPGVVPERYEEAFQPRHCALSLVGEPIIYPEINAFLRYMHEQRISSFMVTNAQFPAEISSLVPVTQLYVSIDAGNEEDLRKIDRPLFVDFWQRFLDSIAALSAKGQRTVFRLTLVKDYNMDSV 711
            K+ML++    +L KQGYK++GSHSGVKLCRWTKSMLRGRGGCYKHTFYGIAS+ CME TPS+ACANKCVFCWRHHKNPV   WRWE D+P F++D  ++KHR MIK  +G+PGV+P+R EEA   RHCALSLVGEPIIYP IN F+  +HEQ IS+F+V+NAQFPA++ +LVP TQLYVSIDA N E+L+ +DRPLF DFW+RFL+ I  L  KGQRTVFRLTLVK +NM  V
Sbjct:  197 KKMLNSALEASLTKQGYKLVGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIASYQCMEATPSLACANKCVFCWRHHKNPVGTSWRWETDDPQFLVDGFISKHRAMIKEMRGLPGVLPDRLEEADTVRHCALSLVGEPIIYPHINKFINLLHEQSISTFLVSNAQFPAQMENLVPCTQLYVSIDASNAEELKAVDRPLFSDFWERFLECIDILERKGQRTVFRLTLVKSFNMSEV 429          
BLAST of mRNA_M-pyrifera_M_contig94708.21849.1 vs. uniprot
Match: L1JNZ4_GUITC (tRNA 4-demethylwyosine synthase (AdoMet-dependent) n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JNZ4_GUITC)

HSP 1 Score: 361 bits (927), Expect = 3.220e-119
Identity = 163/233 (69.96%), Postives = 193/233 (82.83%), Query Frame = 1
Query:   13 KRMLSTTHVKTLQKQGYKIIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIASHLCMEMTPSMACANKCVFCWRHHKNPVTREWRWEQDEPHFIIDQAVAKHRQMIKSCKGIPGVVPERYEEAFQPRHCALSLVGEPIIYPEINAFLRYMHEQRISSFMVTNAQFPAEISSLVPVTQLYVSIDAGNEEDLRKIDRPLFVDFWQRFLDSIAALSAKGQRTVFRLTLVKDYNMDSV 711
            K+ML+ +   +L KQGYK++GSHSGVKLCRWTKSMLRGRGGCYKHTFYGIAS+ CME TPS+ACANKCVFCWRHHKNPV   WRWE D+P F++D  V+KHR MIK  +G+PGV+PER EEA   RHCALSLVGEPIIYP IN F+  +HEQ IS+F+V+NAQFP+++ +LVP TQLYVSIDA N E+L+ +DRPLF DFW+RFL+ I  L  KGQRTVFRLTLVK +NM  V
Sbjct:  227 KKMLNPSLEASLTKQGYKLVGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIASYQCMEATPSLACANKCVFCWRHHKNPVGTSWRWETDDPQFLVDGFVSKHRAMIKEMRGLPGVIPERLEEADTVRHCALSLVGEPIIYPHINKFINLLHEQSISTFLVSNAQFPSQMENLVPCTQLYVSIDASNAEELKAVDRPLFSDFWERFLECIDILDRKGQRTVFRLTLVKSFNMSEV 459          
BLAST of mRNA_M-pyrifera_M_contig94708.21849.1 vs. uniprot
Match: A0A8M1KQH4_CLUHA (S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 isoform X2 n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A8M1KQH4_CLUHA)

HSP 1 Score: 353 bits (905), Expect = 1.790e-118
Identity = 160/223 (71.75%), Postives = 187/223 (83.86%), Query Frame = 1
Query:   46 LQKQGYKIIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIASHLCMEMTPSMACANKCVFCWRHHKNPVTREWRWEQDEPHFIIDQAVAKHRQMIKSCKGIPGVVPERYEEAFQPRHCALSLVGEPIIYPEINAFLRYMHEQRISSFMVTNAQFPAEISSLVPVTQLYVSIDAGNEEDLRKIDRPLFVDFWQRFLDSIAALSAKGQRTVFRLTLVKDYNMDSVR 714
            L KQGYK+IGSHSGVKLCRWTKSMLRGRGGCYKHTFYGI SH CME TPS+ACANKCVFCWRHH NPV  EWRW+ D    I+ +AV  H+ MIK  +G+PGV P+R+EE    +HCALSLVGEPI+YPEINAFLR +H+QRISSF+VTNAQFP EI SLVPVTQLYVS+DA  ++ L++IDRPLF DFWQRFLDS+ +L  K QRTV+RLTLVK +N+D ++
Sbjct:   49 LTKQGYKLIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGTEWRWKMDPADKILLEAVENHQSMIKQFRGVPGVRPDRFEEGLAVKHCALSLVGEPIMYPEINAFLRLLHQQRISSFLVTNAQFPDEIRSLVPVTQLYVSVDASTKDSLKRIDRPLFKDFWQRFLDSLRSLGEKQQRTVYRLTLVKAWNVDELK 271          
BLAST of mRNA_M-pyrifera_M_contig94708.21849.1 vs. uniprot
Match: A0A075B328_ROZAC (tRNA 4-demethylwyosine synthase (AdoMet-dependent) n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B328_ROZAC)

HSP 1 Score: 356 bits (914), Expect = 1.140e-117
Identity = 160/236 (67.80%), Postives = 198/236 (83.90%), Query Frame = 1
Query:    4 AQAKRMLSTTHVKTLQKQGYKIIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIASHLCMEMTPSMACANKCVFCWRHHKNPVTREWRWEQDEPHFIIDQAVAKHRQMIKSCKGIPGVVPERYEEAFQPRHCALSLVGEPIIYPEINAFLRYMHEQRISSFMVTNAQFPAEISSLVPVTQLYVSIDAGNEEDLRKIDRPLFVDFWQRFLDSIAALSAKGQRTVFRLTLVKDYNMDSV 711
            ++ K M++    ++LQKQGYKIIGSHSGVK+CRWTKSMLRGRGGCYKHTFYGI SH CME TPS+ACANKCVFCWRHH NPV  EW+W+ D   F+++ A+  H++MIK  KG+PGV  ER +EAF+ +HCALSLVGEPI+YPEIN F+  +H++RISSF+VTNAQFP  I+SLVPVTQLYVS+DA  +E L+KIDRPLF DFW+RFL S++ LS KGQRTV+RLTLVKD+N++ +
Sbjct:  201 SEVKEMVTPIVRESLQKQGYKIIGSHSGVKICRWTKSMLRGRGGCYKHTFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGTEWKWKMDNAEFVLNGAIENHQKMIKQMKGVPGVGQERMDEAFEIKHCALSLVGEPIMYPEINQFVTLLHQKRISSFLVTNAQFPELITSLVPVTQLYVSVDAATKESLKKIDRPLFKDFWERFLASLSELSKKGQRTVYRLTLVKDFNVNEL 436          
BLAST of mRNA_M-pyrifera_M_contig94708.21849.1 vs. uniprot
Match: A0A8C9QXW1_SCLFO (tRNA 4-demethylwyosine synthase (AdoMet-dependent) n=5 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9QXW1_SCLFO)

HSP 1 Score: 361 bits (926), Expect = 1.270e-117
Identity = 163/232 (70.26%), Postives = 191/232 (82.33%), Query Frame = 1
Query:   19 MLSTTHVKTLQKQGYKIIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIASHLCMEMTPSMACANKCVFCWRHHKNPVTREWRWEQDEPHFIIDQAVAKHRQMIKSCKGIPGVVPERYEEAFQPRHCALSLVGEPIIYPEINAFLRYMHEQRISSFMVTNAQFPAEISSLVPVTQLYVSIDAGNEEDLRKIDRPLFVDFWQRFLDSIAALSAKGQRTVFRLTLVKDYNMDSVR 714
            M++    + L KQGYK+IGSHSGVKLCRWTKSMLRGRGGCYKHTFYGI SH CME TPS+ACANKCVFCWRHH NPV  EWRW+ D P  I+ +A+  H+ MIK  +G+PGV PER+EE    +HCALSLVGEPI+YPEINAF+R +H QRISSF+VTNAQFP EI SLVPVTQLYVS+DA  ++ L+KIDRPLF DFWQRFLDS+ AL  K QRTV+RLTLVK +N+D ++
Sbjct:  360 MITPALREALTKQGYKLIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGTEWRWKMDPPEIILQEALQNHQNMIKQFRGVPGVRPERFEEGLTAKHCALSLVGEPIMYPEINAFIRLLHRQRISSFLVTNAQFPEEIRSLVPVTQLYVSVDASTKDSLKKIDRPLFKDFWQRFLDSLKALGEKQQRTVYRLTLVKAWNVDELK 591          
BLAST of mRNA_M-pyrifera_M_contig94708.21849.1 vs. uniprot
Match: A0A7K9ZA83_9GALL (TYW1 synthase (Fragment) n=1 Tax=Odontophorus gujanensis TaxID=886794 RepID=A0A7K9ZA83_9GALL)

HSP 1 Score: 350 bits (897), Expect = 2.180e-117
Identity = 159/223 (71.30%), Postives = 185/223 (82.96%), Query Frame = 1
Query:   46 LQKQGYKIIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIASHLCMEMTPSMACANKCVFCWRHHKNPVTREWRWEQDEPHFIIDQAVAKHRQMIKSCKGIPGVVPERYEEAFQPRHCALSLVGEPIIYPEINAFLRYMHEQRISSFMVTNAQFPAEISSLVPVTQLYVSIDAGNEEDLRKIDRPLFVDFWQRFLDSIAALSAKGQRTVFRLTLVKDYNMDSVR 714
            L KQGYK+IGSHSGVKLCRWTKSMLRGRGGCYKHTFYGI SH CME TPS+ACANKCVFCWRHH NPV  EWRW+ D+P  I+ +A+  HR MIK  KG+ GV  ER+EEA   +HCALSLVGEPI+YP IN FLR +H++ ISSF+VTNAQFP EI +L PVTQLYVS+DA  +E L++IDRPLF DFWQRFLDS+ ALS K QRTV+RLTLVK +N+D ++
Sbjct:   40 LTKQGYKLIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGTEWRWKMDQPEVILREALENHRNMIKEFKGVTGVRAERFEEAMTAKHCALSLVGEPIMYPNINHFLRLLHQRGISSFLVTNAQFPEEIRNLEPVTQLYVSVDASTKESLKRIDRPLFKDFWQRFLDSLKALSEKQQRTVYRLTLVKAWNVDELK 262          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94708.21849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IKL7_9EUKA1.330e-13581.55tRNA 4-demethylwyosine synthase (AdoMet-dependent)... [more]
A0A7S3DFP5_9EUKA2.020e-12272.77tRNA 4-demethylwyosine synthase (AdoMet-dependent)... [more]
A0A4P9YNJ0_ROZAC3.160e-12068.09Tyw1 protein (Fragment) n=1 Tax=Rozella allomycis ... [more]
A0A498LF57_LABRO4.210e-12071.75S-adenosyl-L-methionine-dependent tRNA 4-demethylw... [more]
A0A7S0E466_9CRYP2.730e-11969.53tRNA 4-demethylwyosine synthase (AdoMet-dependent)... [more]
L1JNZ4_GUITC3.220e-11969.96tRNA 4-demethylwyosine synthase (AdoMet-dependent)... [more]
A0A8M1KQH4_CLUHA1.790e-11871.75S-adenosyl-L-methionine-dependent tRNA 4-demethylw... [more]
A0A075B328_ROZAC1.140e-11767.80tRNA 4-demethylwyosine synthase (AdoMet-dependent)... [more]
A0A8C9QXW1_SCLFO1.270e-11770.26tRNA 4-demethylwyosine synthase (AdoMet-dependent)... [more]
A0A7K9ZA83_9GALL2.180e-11771.30TYW1 synthase (Fragment) n=1 Tax=Odontophorus guja... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94708contigM-pyrifera_M_contig94708:25..738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score359.0
Seed ortholog evalue1.7e-96
Seed eggNOG ortholog55529.EKX50014
Preferred nameTYW1
KEGG koko:K15449
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009451,GO:0009987,GO:0010467,GO:0012505,GO:0016070,GO:0031590,GO:0031591,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.tRNA-4-demethylwyosine synthase activity
EggNOG OGsCOG0731@1,KOG1160@2759
EC4.1.3.44
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons1
Model size714
Cds size696
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816860.6631017-UTR-M-pyrifera_M_contig94708:24..421622816860.6631017-UTR-M-pyrifera_M_contig94708:24..42Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94708 25..42 +
1692278221.3654804-UTR-M-pyrifera_M_contig94708:24..421692278221.3654804-UTR-M-pyrifera_M_contig94708:24..42Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94708 25..42 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816860.6748185-CDS-M-pyrifera_M_contig94708:42..7381622816860.6748185-CDS-M-pyrifera_M_contig94708:42..738Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94708 43..738 +
1692278221.3804255-CDS-M-pyrifera_M_contig94708:42..7381692278221.3804255-CDS-M-pyrifera_M_contig94708:42..738Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94708 43..738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94708.21849.1prot_M-pyrifera_M_contig94708.21849.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94708 43..738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94708.21849.1

>prot_M-pyrifera_M_contig94708.21849.1 ID=prot_M-pyrifera_M_contig94708.21849.1|Name=mRNA_M-pyrifera_M_contig94708.21849.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=232bp
MLSTTHVKTLQKQGYKIIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIAS
HLCMEMTPSMACANKCVFCWRHHKNPVTREWRWEQDEPHFIIDQAVAKHR
QMIKSCKGIPGVVPERYEEAFQPRHCALSLVGEPIIYPEINAFLRYMHEQ
RISSFMVTNAQFPAEISSLVPVTQLYVSIDAGNEEDLRKIDRPLFVDFWQ
RFLDSIAALSAKGQRTVFRLTLVKDYNMDSVR
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mRNA from alignment at M-pyrifera_M_contig94708:25..738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94708.21849.1 ID=mRNA_M-pyrifera_M_contig94708.21849.1|Name=mRNA_M-pyrifera_M_contig94708.21849.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig94708:25..738+ (Macrocystis pyrifera P11B4 male)
AAAGCGCAGGCGAAGCGGATGCTGAGCACGACGCACGTGAAGACGCTGCA GAAGCAGGGCTACAAGATCATCGGCAGCCACAGTGGCGTGAAGCTGTGCA GGTGGACGAAGAGCATGCTGCGTGGCCGCGGGGGCTGCTACAAGCACACC TTCTACGGCATTGCCTCGCACCTCTGCATGGAGATGACGCCGAGCATGGC GTGCGCGAACAAGTGCGTGTTCTGCTGGCGCCACCACAAGAACCCCGTGA CGCGCGAGTGGCGGTGGGAGCAGGACGAGCCGCACTTCATCATCGACCAG GCGGTGGCCAAGCACCGGCAGATGATCAAGAGCTGCAAGGGCATTCCCGG CGTGGTGCCGGAGCGCTACGAGGAGGCCTTCCAGCCGCGCCACTGCGCCC TCTCGCTGGTGGGCGAGCCGATCATCTACCCGGAGATCAACGCGTTCCTG CGCTACATGCACGAGCAGCGCATCAGCAGCTTCATGGTCACCAACGCACA GTTCCCGGCGGAGATCTCCAGCCTCGTGCCCGTGACGCAGCTCTACGTCT CGATCGACGCAGGCAACGAGGAAGACCTCCGCAAGATCGACAGGCCCCTC TTCGTGGACTTCTGGCAGCGCTTCCTCGACAGCATTGCCGCGCTCTCTGC CAAGGGCCAGCGCACCGTCTTCCGCCTCACCCTCGTCAAGGACTACAACA TGGACTCGGTGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94708:25..738+

>mRNA_M-pyrifera_M_contig94708.21849.1 ID=mRNA_M-pyrifera_M_contig94708.21849.1|Name=mRNA_M-pyrifera_M_contig94708.21849.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1392bp|location=Sequence derived from alignment at M-pyrifera_M_contig94708:25..738+ (Macrocystis pyrifera P11B4 male)
ATGCTGAGCACGACGCACGTGAAGACGCTGCAGAAGCAGGGCTACAAGAT
CATCGGCAGCCACAGTGGCGTGAAGCTGTGCAGGTGGACGAAGAGCATGC
TGCGTGGCCGCGGGGGCTGCTACAAGCACACCTTCTACGGCATTGCCTCG
CACCTCTGCATGGAGATGACGCCGAGCATGGCGTGCGCGAACAAGTGCGT
GTTCTGCTGGCGCCACCACAAGAACCCCGTGACGCGCGAGTGGCGGTGGG
AGCAGGACGAGCCGCACTTCATCATCGACCAGGCGGTGGCCAAGCACCGG
CAGATGATCAAGAGCTGCAAGGGCATTCCCGGCGTGGTGCCGGAGCGCTA
CGAGGAGGCCTTCCAGCCGCGCCACTGCGCCCTCTCGCTGGTGGGCGAGC
CGATCATCTACCCGGAGATCAACGCGTTCCTGCGCTACATGCACGAGCAG
CGCATCAGCAGCTTCATGGTCACCAACGCACAGTTCCCGGCGGAGATCTC
CAGCCTCGTGCCCGTGACGCAGCTCTACGTCTCGATCGACGCAGGCAACG
AGGAAGACCTCCGCAAGATCGACAGGCCCCTCTTCGTGGACTTCTGGCAG
CGCTTCCTCGACAGCATTGCCGCGCTCTCTGCCAAGGGCCAGCGCACCGT
CTTCCGCCTCACCCTCGTCAAGGACTACAACATGGACTCGGTGCGCATGC
TGAGCACGACGCACGTGAAGACGCTGCAGAAGCAGGGCTACAAGATCATC
GGCAGCCACAGTGGCGTGAAGCTGTGCAGGTGGACGAAGAGCATGCTGCG
TGGCCGCGGGGGCTGCTACAAGCACACCTTCTACGGCATTGCCTCGCACC
TCTGCATGGAGATGACGCCGAGCATGGCGTGCGCGAACAAGTGCGTGTTC
TGCTGGCGCCACCACAAGAACCCCGTGACGCGCGAGTGGCGGTGGGAGCA
GGACGAGCCGCACTTCATCATCGACCAGGCGGTGGCCAAGCACCGGCAGA
TGATCAAGAGCTGCAAGGGCATTCCCGGCGTGGTGCCGGAGCGCTACGAG
GAGGCCTTCCAGCCGCGCCACTGCGCCCTCTCGCTGGTGGGCGAGCCGAT
CATCTACCCGGAGATCAACGCGTTCCTGCGCTACATGCACGAGCAGCGCA
TCAGCAGCTTCATGGTCACCAACGCACAGTTCCCGGCGGAGATCTCCAGC
CTCGTGCCCGTGACGCAGCTCTACGTCTCGATCGACGCAGGCAACGAGGA
AGACCTCCGCAAGATCGACAGGCCCCTCTTCGTGGACTTCTGGCAGCGCT
TCCTCGACAGCATTGCCGCGCTCTCTGCCAAGGGCCAGCGCACCGTCTTC
CGCCTCACCCTCGTCAAGGACTACAACATGGACTCGGTGCGC
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