mRNA_M-pyrifera_M_contig110411.2183.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110411.2183.1
Unique NamemRNA_M-pyrifera_M_contig110411.2183.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110411.2183.1 vs. uniprot
Match: UPI001C55D9CB (NACHT, LRR and PYD domains-containing protein 12-like n=1 Tax=Cyprinus carpio TaxID=7962 RepID=UPI001C55D9CB)

HSP 1 Score: 58.9 bits (141), Expect = 6.260e-7
Identity = 49/124 (39.52%), Postives = 65/124 (52.42%), Query Frame = 1
Query:  139 SQLGSLRLDGNTGIGNEGVSALAAGLGSS-ASLRHLDLGNCGITEDGARALASAIANGRPGSRDHGREGLLLHTLTLAGNRIGNGGAVLFSGALASPLSRLRSIDLSHATIGVEGARSLASTLR 507
            S L  L L GN  IG+ GV+ L+AGL      L  L L +CGIT++G  ALASA+ +  P    H         L+L GN++GN    L S  L +P  +L  + L+   I  EG  +LAS LR
Sbjct: 1181 SHLRELNLSGNE-IGDSGVTLLSAGLADPHCKLEKLWLRDCGITDEGCAALASALTS-NPSHLGH---------LSLTGNKLGNS-VNLLSDVLQNPHCKLEKLWLNDCDIKDEGCAALASALR 1292          
BLAST of mRNA_M-pyrifera_M_contig110411.2183.1 vs. uniprot
Match: A0A8C1SXY7_CYPCA (Uncharacterized protein n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1SXY7_CYPCA)

HSP 1 Score: 57.4 bits (137), Expect = 1.370e-6
Identity = 48/132 (36.36%), Postives = 66/132 (50.00%), Query Frame = 1
Query:  115 AATLLQKCSQLGSLRLDGNTGIGNEGVSALAAGLGSS-ASLRHLDLGNCGITEDGARALASAIANGRPGSRDHGREGLLLHTLTLAGNRIGNGGAVLFSGALASPLSRLRSIDLSHATIGVEGARSLASTLR 507
            A+ L    S L  L L GN  +G  GV  L+ GL      L  L L +CG+T++G  ALASA+ +    +  H RE      L L+GN++G  G  L S  L  P  +L ++ L    +  EG  +LAS LR
Sbjct:   27 ASALRSNPSHLRQLNLSGNK-LGASGVKLLSDGLKDPHCKLEKLWLSDCGVTDEGCAALASALKS----NPSHLRE------LDLSGNKLGVSGVKLLSDGLKDPHCKLETLWLRDCGVTDEGCAALASALR 147          
BLAST of mRNA_M-pyrifera_M_contig110411.2183.1 vs. uniprot
Match: A8IJ76_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IJ76_CHLRE)

HSP 1 Score: 54.7 bits (130), Expect = 1.490e-5
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 1
Query:  142 QLGSLRLDGNTGIGNEGVSALAAGLGSSASLRHLDLGNCGITEDGARALASAIANGRPG 318
            +L +L L  N  +G  G +ALAAGL ++ASLR LDL NCG+T  G  ALA+A+    PG
Sbjct:  121 RLAALALSNNRLLGPGGATALAAGLAANASLRRLDLANCGVTAPGVVALAAALRPEAPG 179          
BLAST of mRNA_M-pyrifera_M_contig110411.2183.1 vs. uniprot
Match: A0A2K3D378_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D378_CHLRE)

HSP 1 Score: 54.7 bits (130), Expect = 1.710e-5
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 1
Query:  142 QLGSLRLDGNTGIGNEGVSALAAGLGSSASLRHLDLGNCGITEDGARALASAIANGRPG 318
            +L +L L  N  +G  G +ALAAGL ++ASLR LDL NCG+T  G  ALA+A+    PG
Sbjct:  236 RLAALALSNNRLLGPGGATALAAGLAANASLRRLDLANCGVTAPGVVALAAALRPEAPG 294          
BLAST of mRNA_M-pyrifera_M_contig110411.2183.1 vs. uniprot
Match: A0A8C1WN48_CYPCA (NACHT domain-containing protein n=4 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1WN48_CYPCA)

HSP 1 Score: 54.7 bits (130), Expect = 1.720e-5
Identity = 49/135 (36.30%), Postives = 67/135 (49.63%), Query Frame = 1
Query:  106 GYAAATLLQKCSQLGSLRLDGNTGIGNEGVSALAAGLGSS-ASLRHLDLGNCGITEDGARALASAIANGRPGSRDHGREGLLLHTLTLAGNRIGNGGAVLFSGALASPLSRLRSIDLSHATIGVEGARSLASTLR 507
            G   + L    S L  L L GN  +G+ GV+ L+A L      L  L L NCGIT++G  ALASA+ +    +  H      L  L L GN++G+    L S  L  P  +L  + LS+  +  EG  +LAS LR
Sbjct:  880 GALTSALRSNPSHLRQLSLSGNK-VGDSGVTLLSAVLEDPHCKLEILWLCNCGITDEGCAALASALRS----NLSH------LRKLNLTGNKVGDS-VNLLSAVLEDPHCKLERLWLSNCGVTDEGCAALASALR 1002          
BLAST of mRNA_M-pyrifera_M_contig110411.2183.1 vs. uniprot
Match: UPI00201470A3 (ribonuclease inhibitor-like n=1 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI00201470A3)

HSP 1 Score: 51.2 bits (121), Expect = 3.760e-5
Identity = 32/91 (35.16%), Postives = 51/91 (56.04%), Query Frame = 1
Query:  235 RHLDLGNCGITEDGARALASAIANGRPGSRDHGREGLLLHTLTLAGNRIGNGGAVLFSGALASPLSRLRSIDLSHATIGVEGARSLASTLR 507
            R  +L +CG+T++G  ALASA+   RP +  H      L  + L+GN++G+ G  + S  L +P  +L  +  S+  +  EG  +LAS LR
Sbjct:    9 RSAELWDCGVTDEGCAALASAL---RP-NPSH------LRKMHLSGNKLGDSGVKMISAVLENPHCKLEDLGFSNCGVTDEGCAALASALR 89          
BLAST of mRNA_M-pyrifera_M_contig110411.2183.1 vs. uniprot
Match: A0A835WR90_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WR90_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 5.770e-5
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1
Query:  142 QLGSLRLDGNTGIGNEGVSALAAGLGSSASLRHLDLGNCGITEDGARALASAI 300
            +L +L L  N  +G  G +ALAAGL ++ASLR LDL NCG+T  G  ALA+A+
Sbjct:  239 RLAALALPNNRLLGPSGAAALAAGLAANASLRRLDLANCGVTAPGVVALAAAL 291          
BLAST of mRNA_M-pyrifera_M_contig110411.2183.1 vs. uniprot
Match: F1QBA5_DANRE (Si:ch211-233m11.1 n=2 Tax=Danio rerio TaxID=7955 RepID=F1QBA5_DANRE)

HSP 1 Score: 53.1 bits (126), Expect = 5.810e-5
Identity = 50/138 (36.23%), Postives = 63/138 (45.65%), Query Frame = 1
Query:  115 AATLLQKCSQLGSLRLDGNTGIGNEGVSALAAGLGSS-ASLRHLDLGNCGITEDGARALASAIANGRPGSRDHGREGLLLHTLTLAGNRIGNGGAVLFSGALASPLSRLRSIDLSHATIGVEGARSLASTLRLRCSTF 525
            A  L    S L  L L GN  +G+ GV  L+AGL +    L  L L NCGIT  G  ALASA+ +    +         L  L L  NR+ + G  L S  L  P  +L  + L +  I  E    LASTL+L  S  
Sbjct:  838 ALALRSASSNLRELDLIGNR-LGDSGVKLLSAGLKNPHCKLEALRLKNCGITNKGCDALASALRSVSTAN---------LRELDLCDNRLRDSGVRLLSARLEDPHCKLEKLRLCNCEI--EDCADLASTLKLNSSNL 963          
BLAST of mRNA_M-pyrifera_M_contig110411.2183.1 vs. uniprot
Match: A8HAK5_DANRE (NLR family CARD domain-containing 8 n=4 Tax=Danio rerio TaxID=7955 RepID=A8HAK5_DANRE)

HSP 1 Score: 52.8 bits (125), Expect = 7.830e-5
Identity = 60/195 (30.77%), Postives = 85/195 (43.59%), Query Frame = 1
Query:   10 ETGAKLLLEAAERAASSLVRVSLSRNSLGVSSGYAAATLLQKCSQLGSLRLDGNTGIGNEGVSALAAGLGSSAS-LRHLDLG----------------------------NCGITEDGARALASAIANGRPGSRDHGREGLLLHTLTLAGNRIGNGGAVLFSGALASPLSRLRSIDLSHATIGVEGARSLASTLR 507
            + G   L+ A       L  ++LS N+LG S    +A L     +L  LRL    G+ +EG +ALA+ L S+   LR LDL                             NCG+T++G  ALASA+ +     RD          L L+GN++G+    L S  L  P  +L  + LS   +  EG  +LAS LR
Sbjct:  795 DEGCAALVSALRSNPEHLRELNLSGNNLGDSVTLLSAVLEDPHCKLEKLRLY-YCGLTDEGCAALASALRSNPEHLRDLDLSWNKLGDSVTLLSAVLEDPRCKLEKLELYNCGLTDEGCAALASALRSNPEHLRD----------LNLSGNKLGDS-VTLLSAVLEDPRCKLEKLWLSDCGLTDEGCAALASALR 977          
BLAST of mRNA_M-pyrifera_M_contig110411.2183.1 vs. uniprot
Match: UPI0020144243 (NACHT, LRR and PYD domains-containing protein 12-like n=1 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI0020144243)

HSP 1 Score: 52.8 bits (125), Expect = 7.880e-5
Identity = 57/195 (29.23%), Postives = 84/195 (43.08%), Query Frame = 1
Query:   10 ETGAKLLLEAAERAASSLVRVSLSRNSLGVSSGYAAATLLQKCSQLGSLRLDGNTGIGNEGVSALAAGLGSSAS-----------------------------LRHLDLGNCGITEDGARALASAIANGRPGSRDHGREGLLLHTLTLAGNRIGNGGAVLFSGALASPLSRLRSIDLSHATIGVEGARSLASTLR 507
            + G   L  A     S L  + LS N +G S    +A L     +L +L L  + G+ +EG +ALA+ L S+ S                             L  L+L +CG+T++G  ALASA+ +    +  H      L  L+L+ N+IG     L S  L  P  +L  + LS   +  EG  +LAS LR
Sbjct:  773 DEGCAALASALRSNPSHLRELDLSENKIGQSVNLLSAVLQDPHCKLETLELS-DCGVTDEGCAALASALRSNPSHLRELDLSWNKIGQSVNLLSAVLQDPHCKLEKLELSDCGVTDEGCAALASALGS----NPSH------LRVLSLSENKIGQS-VNLLSDVLQDPHCKLEKLRLSDCGVTDEGCAALASALR 955          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110411.2183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
UPI001C55D9CB6.260e-739.52NACHT, LRR and PYD domains-containing protein 12-l... [more]
A0A8C1SXY7_CYPCA1.370e-636.36Uncharacterized protein n=2 Tax=Cyprinus carpio Ta... [more]
A8IJ76_CHLRE1.490e-550.85Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]
A0A2K3D378_CHLRE1.710e-550.85Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A0A8C1WN48_CYPCA1.720e-536.30NACHT domain-containing protein n=4 Tax=Cyprinus c... [more]
UPI00201470A33.760e-535.16ribonuclease inhibitor-like n=1 Tax=Megalobrama am... [more]
A0A835WR90_9CHLO5.770e-552.83Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
F1QBA5_DANRE5.810e-536.23Si:ch211-233m11.1 n=2 Tax=Danio rerio TaxID=7955 R... [more]
A8HAK5_DANRE7.830e-530.77NLR family CARD domain-containing 8 n=4 Tax=Danio ... [more]
UPI00201442437.880e-529.23NACHT, LRR and PYD domains-containing protein 12-l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110411contigM-pyrifera_M_contig110411:28..558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.8
Seed ortholog evalue1.9e-07
Seed eggNOG ortholog3067.XP_002948104.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Leucine Rich repeat
EggNOG OGs34IFZ@3041,37WSS@33090,KOG4308@1,KOG4308@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-15_000770.1
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size531
Cds size531
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.3606124-CDS-M-pyrifera_M_contig110411:27..5581622815615.3606124-CDS-M-pyrifera_M_contig110411:27..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110411 28..558 -
1692277488.563545-CDS-M-pyrifera_M_contig110411:27..5581692277488.563545-CDS-M-pyrifera_M_contig110411:27..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110411 28..558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110411.2183.1prot_M-pyrifera_M_contig110411.2183.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110411 28..558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110411.2183.1

>prot_M-pyrifera_M_contig110411.2183.1 ID=prot_M-pyrifera_M_contig110411.2183.1|Name=mRNA_M-pyrifera_M_contig110411.2183.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=177bp
MDDETGAKLLLEAAERAASSLVRVSLSRNSLGVSSGYAAATLLQKCSQLG
SLRLDGNTGIGNEGVSALAAGLGSSASLRHLDLGNCGITEDGARALASAI
ANGRPGSRDHGREGLLLHTLTLAGNRIGNGGAVLFSGALASPLSRLRSID
LSHATIGVEGARSLASTLRLRCSTFSR
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mRNA from alignment at M-pyrifera_M_contig110411:28..558-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110411.2183.1 ID=mRNA_M-pyrifera_M_contig110411.2183.1|Name=mRNA_M-pyrifera_M_contig110411.2183.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=531bp|location=Sequence derived from alignment at M-pyrifera_M_contig110411:28..558- (Macrocystis pyrifera P11B4 male)
ATGGATGATGAAACAGGGGCGAAACTGTTGTTGGAGGCTGCTGAGCGGGC TGCCTCATCGTTAGTTCGTGTATCTCTCTCACGCAATTCACTTGGTGTCT CTAGTGGTTATGCAGCTGCAACACTATTACAAAAGTGTTCTCAGTTAGGT TCATTGCGGCTGGATGGCAACACAGGAATTGGAAATGAGGGCGTGTCTGC ATTAGCTGCTGGATTGGGCAGTTCTGCTTCTCTTCGTCATTTGGATTTGG GCAATTGTGGAATAACAGAAGATGGTGCACGTGCTCTTGCCTCTGCAATT GCCAATGGCCGCCCTGGGAGTCGAGATCATGGAAGAGAAGGATTATTGTT GCATACGCTGACTCTGGCAGGAAATCGCATTGGAAATGGTGGGGCAGTGT TGTTTTCTGGAGCCCTTGCATCTCCTCTGAGTCGTCTTCGTTCTATTGAT CTCTCCCATGCCACCATTGGTGTAGAAGGAGCTCGCTCTCTCGCCTCCAC CCTCCGTCTCCGATGTTCCACGTTTTCCCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110411:28..558-

>mRNA_M-pyrifera_M_contig110411.2183.1 ID=mRNA_M-pyrifera_M_contig110411.2183.1|Name=mRNA_M-pyrifera_M_contig110411.2183.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1062bp|location=Sequence derived from alignment at M-pyrifera_M_contig110411:28..558- (Macrocystis pyrifera P11B4 male)
ATGGATGATGAAACAGGGGCGAAACTGTTGTTGGAGGCTGCTGAGCGGGC
TGCCTCATCGTTAGTTCGTGTATCTCTCTCACGCAATTCACTTGGTGTCT
CTAGTGGTTATGCAGCTGCAACACTATTACAAAAGTGTTCTCAGTTAGGT
TCATTGCGGCTGGATGGCAACACAGGAATTGGAAATGAGGGCGTGTCTGC
ATTAGCTGCTGGATTGGGCAGTTCTGCTTCTCTTCGTCATTTGGATTTGG
GCAATTGTGGAATAACAGAAGATGGTGCACGTGCTCTTGCCTCTGCAATT
GCCAATGGCCGCCCTGGGAGTCGAGATCATGGAAGAGAAGGATTATTGTT
GCATACGCTGACTCTGGCAGGAAATCGCATTGGAAATGGTGGGGCAGTGT
TGTTTTCTGGAGCCCTTGCATCTCCTCTGAGTCGTCTTCGTTCTATTGAT
CTCTCCCATGCCACCATTGGTGTAGAAGGAGCTCGCTCTCTCGCCTCCAC
CCTCCGTCTCCGATGTTCCACGTTTTCCCGCATGGATGATGAAACAGGGG
CGAAACTGTTGTTGGAGGCTGCTGAGCGGGCTGCCTCATCGTTAGTTCGT
GTATCTCTCTCACGCAATTCACTTGGTGTCTCTAGTGGTTATGCAGCTGC
AACACTATTACAAAAGTGTTCTCAGTTAGGTTCATTGCGGCTGGATGGCA
ACACAGGAATTGGAAATGAGGGCGTGTCTGCATTAGCTGCTGGATTGGGC
AGTTCTGCTTCTCTTCGTCATTTGGATTTGGGCAATTGTGGAATAACAGA
AGATGGTGCACGTGCTCTTGCCTCTGCAATTGCCAATGGCCGCCCTGGGA
GTCGAGATCATGGAAGAGAAGGATTATTGTTGCATACGCTGACTCTGGCA
GGAAATCGCATTGGAAATGGTGGGGCAGTGTTGTTTTCTGGAGCCCTTGC
ATCTCCTCTGAGTCGTCTTCGTTCTATTGATCTCTCCCATGCCACCATTG
GTGTAGAAGGAGCTCGCTCTCTCGCCTCCACCCTCCGTCTCCGATGTTCC
ACGTTTTCCCGC
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