mRNA_M-pyrifera_M_contig94203.21754.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94203.21754.1
Unique NamemRNA_M-pyrifera_M_contig94203.21754.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig94203.21754.1 vs. uniprot
Match: A0A2R5H1B3_9STRA (Latrophilin receptor-like protein A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H1B3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.630e-13
Identity = 39/75 (52.00%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:    1 EAQQRRVLRRLLLYVFVFTFARFWSIVHRFYQAANPDAGPILGLAVMHAIFSPLQGTANALVYGANRRVLAEYER 225
            + Q R V RRL LY+ VF   R W +VHR +   + +   +  LA+MHAIFSPLQG ANALVYG N  V  EY R
Sbjct:  233 QVQGRTVTRRLRLYLAVFVVFRVWGVVHRTHNYFHENQ--MFWLALMHAIFSPLQGFANALVYGCNAAVAREYRR 305
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BLAST of mRNA_M-pyrifera_M_contig94203.21754.1 vs. uniprot
Match: A0A5A8E2T4_CAFRO (G_PROTEIN_RECEP_F2_4 domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E2T4_CAFRO)

HSP 1 Score: 66.2 bits (160), Expect = 6.660e-11
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    4 AQQRRVLRRLLLYVFVFTFARFWSIVHRFYQ-AANPDAGPILGLAVMHAIFSPLQGTANALVYGANRRVLAEY 219
            AQ+  V+RR+L++  +F   R  S+ +R  Q +A P A P+  L+++HA FSPLQG ANALVYG NR V+ EY
Sbjct:  199 AQKPLVMRRILVFFALFLGLRLPSLANRIQQLSAGPGAEPVFVLSLLHATFSPLQGFANALVYGFNRLVVTEY 271
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94203.21754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2R5H1B3_9STRA8.630e-1352.00Latrophilin receptor-like protein A n=1 Tax=Hondae... [more]
A0A5A8E2T4_CAFRO6.660e-1149.32G_PROTEIN_RECEP_F2_4 domain-containing protein n=3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94203contigM-pyrifera_M_contig94203:468..704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816856.1062047-CDS-M-pyrifera_M_contig94203:467..7041622816856.1062047-CDS-M-pyrifera_M_contig94203:467..704Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94203 468..704 -
1692278218.7590744-CDS-M-pyrifera_M_contig94203:467..7041692278218.7590744-CDS-M-pyrifera_M_contig94203:467..704Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94203 468..704 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94203.21754.1prot_M-pyrifera_M_contig94203.21754.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94203 468..704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94203.21754.1

>prot_M-pyrifera_M_contig94203.21754.1 ID=prot_M-pyrifera_M_contig94203.21754.1|Name=mRNA_M-pyrifera_M_contig94203.21754.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
EAQQRRVLRRLLLYVFVFTFARFWSIVHRFYQAANPDAGPILGLAVMHAI
FSPLQGTANALVYGANRRVLAEYERIFGP
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mRNA from alignment at M-pyrifera_M_contig94203:468..704-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94203.21754.1 ID=mRNA_M-pyrifera_M_contig94203.21754.1|Name=mRNA_M-pyrifera_M_contig94203.21754.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig94203:468..704- (Macrocystis pyrifera P11B4 male)
GAGGCCCAGCAGAGACGGGTGCTGCGTCGTCTCCTCCTCTACGTCTTCGT
CTTCACCTTTGCGCGCTTCTGGTCCATCGTCCACCGGTTCTACCAAGCCG
CAAACCCAGACGCTGGCCCCATATTGGGCCTCGCTGTGATGCACGCCATT
TTCTCCCCGCTGCAAGGCACTGCCAATGCGCTAGTCTACGGCGCCAATCG
AAGAGTACTCGCCGAGTATGAGCGAATCTTTGGTCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94203:468..704-

>mRNA_M-pyrifera_M_contig94203.21754.1 ID=mRNA_M-pyrifera_M_contig94203.21754.1|Name=mRNA_M-pyrifera_M_contig94203.21754.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig94203:468..704- (Macrocystis pyrifera P11B4 male)
GAGGCCCAGCAGAGACGGGTGCTGCGTCGTCTCCTCCTCTACGTCTTCGT
CTTCACCTTTGCGCGCTTCTGGTCCATCGTCCACCGGTTCTACCAAGCCG
CAAACCCAGACGCTGGCCCCATATTGGGCCTCGCTGTGATGCACGCCATT
TTCTCCCCGCTGCAAGGCACTGCCAATGCGCTAGTCTACGGCGCCAATCG
AAGAGTACTCGCCGAGTATGAGCGAATCTTTGGTCCAGAGGCCCAGCAGA
GACGGGTGCTGCGTCGTCTCCTCCTCTACGTCTTCGTCTTCACCTTTGCG
CGCTTCTGGTCCATCGTCCACCGGTTCTACCAAGCCGCAAACCCAGACGC
TGGCCCCATATTGGGCCTCGCTGTGATGCACGCCATTTTCTCCCCGCTGC
AAGGCACTGCCAATGCGCTAGTCTACGGCGCCAATCGAAGAGTACTCGCC
GAGTATGAGCGAATCTTTGGTCCA
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