mRNA_M-pyrifera_M_contig110393.2175.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig110393.2175.1 vs. uniprot
Match: A0A5A8E375_CAFRO (AAA domain-containing protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8E375_CAFRO) HSP 1 Score: 203 bits (517), Expect = 1.810e-62 Identity = 100/122 (81.97%), Postives = 118/122 (96.72%), Query Frame = 1
Query: 4 QLSDVVGNEPVVERLKAIADAGNMNNIILAGPPGTGKTTSIMCLARAMLGPAVLKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSAAQQSLRRTMEIWSSTTR 369
+L+D+VGNEP+VERLK I + GNMNN+ILAGPPGTGKTTS++CLARA+LGPA +K+AVLELNASDDRGIDVVRNKIK+FAQKKVTLPPGRHKI+ILDEADSMT++AQQ+LRRTME++SSTTR
Sbjct: 56 ELADIVGNEPIVERLKIIGEEGNMNNMILAGPPGTGKTTSVLCLARALLGPA-MKDAVLELNASDDRGIDVVRNKIKVFAQKKVTLPPGRHKIIILDEADSMTASAQQALRRTMEVFSSTTR 176
BLAST of mRNA_M-pyrifera_M_contig110393.2175.1 vs. uniprot
Match: A0A5D6XUN5_9STRA (AAA domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUN5_9STRA) HSP 1 Score: 189 bits (481), Expect = 1.490e-57 Identity = 98/121 (80.99%), Postives = 111/121 (91.74%), Query Frame = 1
Query: 7 LSDVVGNEPVVERLKAIADAGNMNNIILAGPPGTGKTTSIMCLARAMLGPAVLKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSAAQQSLRRTMEIWSSTTR 369
LSDVVGN +E L+A+A GNM N+I++GPPGTGKTTSI+CLAR +LGPAV K+AVLELNASDDRGID VRNKIKMFAQ+KVTLPPGRHKIVILDEADSMT+AAQQ+LRRTMEI+SSTTR
Sbjct: 18 LSDVVGNADTIECLRAMAKDGNMTNLIISGPPGTGKTTSILCLARELLGPAV-KQAVLELNASDDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTTAAQQALRRTMEIFSSTTR 137
BLAST of mRNA_M-pyrifera_M_contig110393.2175.1 vs. uniprot
Match: F2U8I7_SALR5 (Replication factor C subunit 2 n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U8I7_SALR5) HSP 1 Score: 189 bits (481), Expect = 1.530e-57 Identity = 94/121 (77.69%), Postives = 110/121 (90.91%), Query Frame = 1
Query: 7 LSDVVGNEPVVERLKAIADAGNMNNIILAGPPGTGKTTSIMCLARAMLGPAVLKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSAAQQSLRRTMEIWSSTTR 369
L D+VGNE V+RLK IA+AGNM N+I+AGPPGTGKTTSI+CLARA+LG V KEAV+E NASDDRGI+VVRN IKMF++KKVTLPPGRHKIVILDE DSMTSAAQQ+LRRTME++++TTR
Sbjct: 14 LKDIVGNEETVDRLKVIAEAGNMPNLIIAGPPGTGKTTSILCLARALLGEDVYKEAVMETNASDDRGIEVVRNNIKMFSRKKVTLPPGRHKIVILDEVDSMTSAAQQALRRTMEMYANTTR 134
BLAST of mRNA_M-pyrifera_M_contig110393.2175.1 vs. uniprot
Match: A0A6F8ZZN9_9TELE (AAA domain-containing protein n=1 Tax=Coregonus sp. 'balchen' TaxID=861768 RepID=A0A6F8ZZN9_9TELE) HSP 1 Score: 184 bits (466), Expect = 4.240e-57 Identity = 94/123 (76.42%), Postives = 110/123 (89.43%), Query Frame = 1
Query: 1 LQLSDVVGNEPVVERLKAIADAGNMNNIILAGPPGTGKTTSIMCLARAMLGPAVLKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSAAQQSLRRTMEIWSSTTR 369
L+L+++VGNE V RL+ A GN+ NII+AGPPGTGKTTSI+CLARA+LGPA +K+AVLELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHKI+ILDEADSMT AQQ+LRRTMEI+S TTR
Sbjct: 42 LKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA-MKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTR 163
BLAST of mRNA_M-pyrifera_M_contig110393.2175.1 vs. uniprot
Match: A0A2D4C0G1_PYTIN (Replication factor C subunit 2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0G1_PYTIN) HSP 1 Score: 188 bits (478), Expect = 4.580e-57 Identity = 97/121 (80.17%), Postives = 111/121 (91.74%), Query Frame = 1
Query: 7 LSDVVGNEPVVERLKAIADAGNMNNIILAGPPGTGKTTSIMCLARAMLGPAVLKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSAAQQSLRRTMEIWSSTTR 369
LSDVVGN ++ L+A+A GNM N+I+AGPPGTGKTTSI+CLAR +LGPA +K+AVLELNASDDRGID VRNKIKMFAQ+KVTLPPGRHKIVILDEADSMT+AAQQ+LRRTMEI+SSTTR
Sbjct: 18 LSDVVGNAETIDCLRAMARDGNMTNLIIAGPPGTGKTTSILCLARELLGPA-MKQAVLELNASDDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTAAAQQALRRTMEIFSSTTR 137
BLAST of mRNA_M-pyrifera_M_contig110393.2175.1 vs. uniprot
Match: A0A0G4G9B3_9ALVE (AAA domain-containing protein (Fragment) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G9B3_9ALVE) HSP 1 Score: 183 bits (465), Expect = 5.140e-57 Identity = 95/122 (77.87%), Postives = 111/122 (90.98%), Query Frame = 1
Query: 4 QLSDVVGNEPVVERLKAIADAGNMNNIILAGPPGTGKTTSIMCLARAMLGPAVLKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSAAQQSLRRTMEIWSSTTR 369
+L+DVVGN+ V+RLKAIA+ GN+ NII++GPPGTGKTTSI+CLA +LG + K AVLELNASDDRGIDVVRNKIKMFAQ+KV+LPPGRHKIVILDEADSMT AAQQ++RRTMEI+SSTTR
Sbjct: 12 KLADVVGNDLTVDRLKAIAEDGNLPNIIISGPPGTGKTTSILCLATELLG-SYRKNAVLELNASDDRGIDVVRNKIKMFAQQKVSLPPGRHKIVILDEADSMTEAAQQAMRRTMEIYSSTTR 132
BLAST of mRNA_M-pyrifera_M_contig110393.2175.1 vs. uniprot
Match: A0A7K8X6B8_9PICI (RFC2 factor (Fragment) n=1 Tax=Eubucco bourcierii TaxID=91767 RepID=A0A7K8X6B8_9PICI) HSP 1 Score: 183 bits (465), Expect = 5.650e-57 Identity = 94/123 (76.42%), Postives = 109/123 (88.62%), Query Frame = 1
Query: 1 LQLSDVVGNEPVVERLKAIADAGNMNNIILAGPPGTGKTTSIMCLARAMLGPAVLKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSAAQQSLRRTMEIWSSTTR 369
++L ++VGNE V RL+ A GN+ NII+AGPPGTGKTTSI+CLARA+LGPA LK+AVLELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHKI+ILDEADSMT AQQ+LRRTMEI+S TTR
Sbjct: 47 MKLCEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPA-LKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTR 168
BLAST of mRNA_M-pyrifera_M_contig110393.2175.1 vs. uniprot
Match: A0A7S0WJW7_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WJW7_9CHLO) HSP 1 Score: 187 bits (476), Expect = 1.140e-56 Identity = 96/121 (79.34%), Postives = 108/121 (89.26%), Query Frame = 1
Query: 7 LSDVVGNEPVVERLKAIADAGNMNNIILAGPPGTGKTTSIMCLARAMLGPAVLKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSAAQQSLRRTMEIWSSTTR 369
+ D+VGN+ V RL+ IA+ GNM N+ILAGPPGTGKTTSI+CLA +LGP KEAVLELNASDDRGIDVVRNKIKMF+QKKVTLPPGRHK+VILDEADSMTS AQQ+LRRTMEI+SSTTR
Sbjct: 32 IKDIVGNDEAVSRLQVIAEEGNMPNLILAGPPGTGKTTSILCLASQLLGPNY-KEAVLELNASDDRGIDVVRNKIKMFSQKKVTLPPGRHKVVILDEADSMTSGAQQALRRTMEIYSSTTR 151
BLAST of mRNA_M-pyrifera_M_contig110393.2175.1 vs. uniprot
Match: A0A7S4KKA6_9EUKA (Hypothetical protein n=2 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KKA6_9EUKA) HSP 1 Score: 187 bits (474), Expect = 1.220e-56 Identity = 95/121 (78.51%), Postives = 104/121 (85.95%), Query Frame = 1
Query: 7 LSDVVGNEPVVERLKAIADAGNMNNIILAGPPGTGKTTSIMCLARAMLGPAVLKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSAAQQSLRRTMEIWSSTTR 369
+ DVVGNE V RL+ IA GNM NII+AGPPGTGKTTSI+CLAR +LGP KE VLELNASDDRGI +VR KIKMFAQKKVTLPPGRHKIVILDEAD +TSAAQQ+LRRTMEI+S TTR
Sbjct: 1 MEDVVGNEETVSRLRVIAKEGNMPNIIIAGPPGTGKTTSILCLARQLLGPEKAKEGVLELNASDDRGISIVREKIKMFAQKKVTLPPGRHKIVILDEADQITSAAQQALRRTMEIYSDTTR 121
BLAST of mRNA_M-pyrifera_M_contig110393.2175.1 vs. uniprot
Match: UPI001FB0F011 (replication factor C subunit 2 isoform X2 n=1 Tax=Homo sapiens TaxID=9606 RepID=UPI001FB0F011) HSP 1 Score: 182 bits (462), Expect = 2.430e-56 Identity = 93/123 (75.61%), Postives = 110/123 (89.43%), Query Frame = 1
Query: 1 LQLSDVVGNEPVVERLKAIADAGNMNNIILAGPPGTGKTTSIMCLARAMLGPAVLKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSAAQQSLRRTMEIWSSTTR 369
++L+++VGNE V RL+ A GN+ NII+AGPPGTGKTTSI+CLARA+LGPA LK+A+LELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHKI+ILDEADSMT AQQ+LRRTMEI+S TTR
Sbjct: 45 VKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA-LKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTR 166 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110393.2175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig110393.2175.1 >prot_M-pyrifera_M_contig110393.2175.1 ID=prot_M-pyrifera_M_contig110393.2175.1|Name=mRNA_M-pyrifera_M_contig110393.2175.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp LQLSDVVGNEPVVERLKAIADAGNMNNIILAGPPGTGKTTSIMCLARAMLback to top mRNA from alignment at M-pyrifera_M_contig110393:50..598+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig110393.2175.1 ID=mRNA_M-pyrifera_M_contig110393.2175.1|Name=mRNA_M-pyrifera_M_contig110393.2175.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=549bp|location=Sequence derived from alignment at M-pyrifera_M_contig110393:50..598+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig110393:50..598+ >mRNA_M-pyrifera_M_contig110393.2175.1 ID=mRNA_M-pyrifera_M_contig110393.2175.1|Name=mRNA_M-pyrifera_M_contig110393.2175.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig110393:50..598+ (Macrocystis pyrifera P11B4 male)back to top |