mRNA_M-pyrifera_M_contig942.21747.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig942.21747.1
Unique NamemRNA_M-pyrifera_M_contig942.21747.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig942.21747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig942contigM-pyrifera_M_contig942:22324..23379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-13_003570.1
Exons2
Model size762
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig942.21747.1prot_M-pyrifera_M_contig942.21747.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig942 22420..23130 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816855.6628163-UTR-M-pyrifera_M_contig942:22323..224191622816855.6628163-UTR-M-pyrifera_M_contig942:22323..22419Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig942 22324..22419 +
1692278218.5078144-UTR-M-pyrifera_M_contig942:22323..224191692278218.5078144-UTR-M-pyrifera_M_contig942:22323..22419Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig942 22324..22419 +
1622816855.6995282-UTR-M-pyrifera_M_contig942:23130..233791622816855.6995282-UTR-M-pyrifera_M_contig942:23130..23379Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig942 23131..23379 +
1692278218.5420818-UTR-M-pyrifera_M_contig942:23130..233791692278218.5420818-UTR-M-pyrifera_M_contig942:23130..23379Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig942 23131..23379 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816855.6753592-CDS-M-pyrifera_M_contig942:22419..227411622816855.6753592-CDS-M-pyrifera_M_contig942:22419..22741Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig942 22420..22741 +
1692278218.5177758-CDS-M-pyrifera_M_contig942:22419..227411692278218.5177758-CDS-M-pyrifera_M_contig942:22419..22741Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig942 22420..22741 +
1622816855.6881895-CDS-M-pyrifera_M_contig942:23035..231301622816855.6881895-CDS-M-pyrifera_M_contig942:23035..23130Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig942 23036..23130 +
1692278218.526921-CDS-M-pyrifera_M_contig942:23035..231301692278218.526921-CDS-M-pyrifera_M_contig942:23035..23130Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig942 23036..23130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig942.21747.1

>prot_M-pyrifera_M_contig942.21747.1 ID=prot_M-pyrifera_M_contig942.21747.1|Name=mRNA_M-pyrifera_M_contig942.21747.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
MPSPRLHQDTIVRRGWEQQEGVLCRAQEGRNGGREEQEVHPPRLHQDTIV
RRGWQQQEGVLCRAQEGRNGGRQEQEVPPPRLHQEAVVRRGCQQEEGVLR
RAQEGRNGEQWWRRFAEKVVKVDSTLFSSSSACFIKKY*
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mRNA from alignment at M-pyrifera_M_contig942:22324..23379+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig942.21747.1 ID=mRNA_M-pyrifera_M_contig942.21747.1|Name=mRNA_M-pyrifera_M_contig942.21747.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig942:22324..23379+ (Macrocystis pyrifera P11B4 male)
CACCAAGATACCATCGTTCGGCGTGGATGGCAGCAACAAGAAGGAGTTCT
GTGTCGAGCACAAGAGGACCGGGATGGTGAACGTGAAGAACAACAGATGC
CTTCACCGCGGTTGCACCAAGACACCATCGTTCGGCGTGGATGGGAGCAA
CAAGAAGGAGTTCTGTGTCGAGCACAAGAGGGCCGGAATGGTGGACGAGA
GGAGCAAGAGGTGCATCCACCAAGGTTGCATCAAGATACCATCGTTCGGC
GTGGATGGCAGCAACAAGAAGGAGTTCTGTGTCGAGCACAAGAGGGACGG
AATGGTGGACGTCAGGAACAAGAGGTGCCTCCACCAAGGTTGCACCAAGA
GGCCGTCGTTCGGCGTGGATGTCAGCAAGAAGAAGGAGTTCTGCGCCGAG
CACAAGAGGGACGGAATGGTGAGCGTGAGGAACAAGAGGTGTCTTCACTA
AGGGAACGATTTAAAGCACTAGAGCCATCTCTCAAAAATCAATATTGCGC
ACGTGCTGTTACTGTGTTTGTGTACGTGTTCGTCCCATTTATTCGGGCGT
CTGCCAAACGTTTCGGTGCAGTTTCTCAGTACAGCATGACGTATCCGCCG
GGGTCACACAGGAGGAGGTGAACACTGAAGCTTTTTTCTGCTGTTACTGT
ACCGTGTGGTATTTCTTACGCCGTCTACGCATGTTGTTTTAACATGTAAT
TTTTGTCACCAGGTGAACAATGGTGGAGACGCTTCGCGGAGAAGGTCGTA
AAGGTCGACTCCACTTTATTTTCTTCTTCGTCAGCGTGCTTCATTAAAAA
ATATTAGGAGGGATATCCGCGTTTATGTATTAACTTGTTTTTGTTGCGGA
ACTCACGGGAGATTCCACCCCTACCTTGTGTTGTTTTGTACAGACAGCAC
TCCAGACAGCAGTTTCGCTGTTGTCGGCAAGCATTCATTTTGGTAAAGAG
TGGGAGATGGGGCATGGATCTGGTTTTCATTTTGTAATCAAACTTGGCAC
TTGCTTCAGCACAACCTACGTCCAAGCGTGCCTGTATCGGCAGTACATAA
CAAAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig942:22324..23379+

>mRNA_M-pyrifera_M_contig942.21747.1 ID=mRNA_M-pyrifera_M_contig942.21747.1|Name=mRNA_M-pyrifera_M_contig942.21747.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig942:22324..23379+ (Macrocystis pyrifera P11B4 male)
ATGCCTTCACCGCGGTTGCACCAAGACACCATCGTTCGGCGTGGATGGGA
GCAACAAGAAGGAGTTCTGTGTCGAGCACAAGAGGGCCGGAATGGTGGAC
GAGAGGAGCAAGAGGTGCATCCACCAAGGTTGCATCAAGATACCATCGTT
CGGCGTGGATGGCAGCAACAAGAAGGAGTTCTGTGTCGAGCACAAGAGGG
ACGGAATGGTGGACGTCAGGAACAAGAGGTGCCTCCACCAAGGTTGCACC
AAGAGGCCGTCGTTCGGCGTGGATGTCAGCAAGAAGAAGGAGTTCTGCGC
CGAGCACAAGAGGGACGGAATGATGCCTTCACCGCGGTTGCACCAAGACA
CCATCGTTCGGCGTGGATGGGAGCAACAAGAAGGAGTTCTGTGTCGAGCA
CAAGAGGGCCGGAATGGTGGACGAGAGGAGCAAGAGGTGCATCCACCAAG
GTTGCATCAAGATACCATCGTTCGGCGTGGATGGCAGCAACAAGAAGGAG
TTCTGTGTCGAGCACAAGAGGGACGGAATGGTGGACGTCAGGAACAAGAG
GTGCCTCCACCAAGGTTGCACCAAGAGGCCGTCGTTCGGCGTGGATGTCA
GCAAGAAGAAGGAGTTCTGCGCCGAGCACAAGAGGGACGGAATGGTGAAC
AATGGTGGAGACGCTTCGCGGAGAAGGTCGTAAAGGTCGACTCCACTTTA
TTTTCTTCTTCGTCAGCGTGCTTCATTAAAAAATATTAGGTGAACAATGG
TGGAGACGCTTCGCGGAGAAGGTCGTAAAGGTCGACTCCACTTTATTTTC
TTCTTCGTCAGCGTGCTTCATTAAAAAATATTAG
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