mRNA_M-pyrifera_M_contig110243.2149.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110243.2149.1
Unique NamemRNA_M-pyrifera_M_contig110243.2149.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110243.2149.1 vs. uniprot
Match: A0A7V4HV34_9BACT (DUF2130 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V4HV34_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 3.290e-5
Identity = 22/39 (56.41%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 MSDTIICPNCQVDIEVTEAISAQLRAQLKQQFDAETRKR 117
            M DTI+CP C+ +IEVTE +SAQLR QL+++++AE R++
Sbjct:   13 MPDTILCPKCKYEIEVTEVLSAQLREQLRKEYEAERRRK 51
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BLAST of mRNA_M-pyrifera_M_contig110243.2149.1 vs. uniprot
Match: A0A3N5VA90_9PLAN (DUF2130 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3N5VA90_9PLAN)

HSP 1 Score: 51.2 bits (121), Expect = 4.500e-5
Identity = 51/123 (41.46%), Postives = 73/123 (59.35%), Query Frame = 1 
Query:    1 MSDTIICPNCQVDIEVTEAISAQLRAQLKQQFDAET--------RKRDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEQVSDRLGQERKRIAAEALAKAQESVGTELKDAHNQLGDLKQK 345
            MS  I+CPNC++ IE+TE +SAQLRA ++ + +AE         +++D     XXXXXXXXXX        XXXXXXXX   +  +LG ER  +  +   +A+E +G +LKD   +L  L+ K
Sbjct:    1 MSSNIVCPNCKIQIEITEVMSAQLRASIRNELEAELNTTRQCLKQQQDELAQRXXXXXXXXXXVDEQVRVKXXXXXXXXXXSLRKKLGDERAELIRQTQERAREELGIQLKDRDAELSKLRAK 123
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BLAST of mRNA_M-pyrifera_M_contig110243.2149.1 vs. uniprot
Match: A0A1F9DYN1_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium RBG_19FT_COMBO_46_12 TaxID=1797850 RepID=A0A1F9DYN1_9DELT)

HSP 1 Score: 50.8 bits (120), Expect = 6.080e-5
Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:   13 IICPNCQVDIEVTEAISAQLRAQLKQQFDAETRKRDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEQVSDRLGQERKRIAAEALAKAQESVGTELKDAHNQLGDLKQK 345
            IICP+C  +I +TEAIS Q+R QL+++FDAE +K++ XXXXXXXXXXXXXXX               +E  + ++  E+ ++  EA  KA++++G EL D   Q+ +  QK
Sbjct:    6 IICPHCNREIPLTEAISHQIREQLRKEFDAEVKKKEQXXXXXXXXXXXXXXXM--------------EEDFAKKIKIEKAKLEEEAKRKAEQTIGIELNDLKAQVTEKDQK 102
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110243.2149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7V4HV34_9BACT3.290e-556.41DUF2130 domain-containing protein n=1 Tax=Planctom... [more]
A0A3N5VA90_9PLAN4.500e-541.46DUF2130 domain-containing protein n=1 Tax=Planctom... [more]
A0A1F9DYN1_9DELT6.080e-543.24Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110243contigM-pyrifera_M_contig110243:254..598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.8356977-CDS-M-pyrifera_M_contig110243:253..5981622815613.8356977-CDS-M-pyrifera_M_contig110243:253..598Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110243 254..598 +
1692277487.902173-CDS-M-pyrifera_M_contig110243:253..5981692277487.902173-CDS-M-pyrifera_M_contig110243:253..598Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110243 254..598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110243.2149.1prot_M-pyrifera_M_contig110243.2149.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110243 254..598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110243.2149.1

>prot_M-pyrifera_M_contig110243.2149.1 ID=prot_M-pyrifera_M_contig110243.2149.1|Name=mRNA_M-pyrifera_M_contig110243.2149.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
MSDTIICPNCQVDIEVTEAISAQLRAQLKQQFDAETRKRDSEFAQRESTL
KESRQELLQAQQELEQSREAIDEQVSDRLGQERKRIAAEALAKAQESVGT
ELKDAHNQLGDLKQK
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mRNA from alignment at M-pyrifera_M_contig110243:254..598+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110243.2149.1 ID=mRNA_M-pyrifera_M_contig110243.2149.1|Name=mRNA_M-pyrifera_M_contig110243.2149.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig110243:254..598+ (Macrocystis pyrifera P11B4 male)
ATGTCTGACACCATTATTTGCCCTAATTGTCAGGTCGACATCGAGGTCAC
GGAGGCGATCTCCGCTCAACTGCGGGCTCAACTCAAGCAGCAGTTTGACG
CTGAGACACGCAAACGGGACAGCGAGTTCGCTCAACGAGAGTCCACGCTC
AAGGAGTCTCGGCAGGAGCTCCTCCAGGCTCAGCAGGAATTGGAGCAATC
TCGCGAGGCGATCGACGAACAGGTCAGTGATCGACTTGGGCAGGAACGCA
AACGCATTGCAGCCGAGGCCTTAGCGAAGGCTCAGGAGTCGGTCGGCACC
GAGCTCAAGGACGCTCACAATCAGTTGGGCGATCTCAAACAAAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110243:254..598+

>mRNA_M-pyrifera_M_contig110243.2149.1 ID=mRNA_M-pyrifera_M_contig110243.2149.1|Name=mRNA_M-pyrifera_M_contig110243.2149.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig110243:254..598+ (Macrocystis pyrifera P11B4 male)
ATGTCTGACACCATTATTTGCCCTAATTGTCAGGTCGACATCGAGGTCAC
GGAGGCGATCTCCGCTCAACTGCGGGCTCAACTCAAGCAGCAGTTTGACG
CTGAGACACGCAAACGGGACAGCGAGTTCGCTCAACGAGAGTCCACGCTC
AAGGAGTCTCGGCAGGAGCTCCTCCAGGCTCAGCAGGAATTGGAGCAATC
TCGCGAGGCGATCGACGAACAGGTCAGTGATCGACTTGGGCAGGAACGCA
AACGCATTGCAGCCGAGGCCTTAGCGAAGGCTCAGGAGTCGGTCGGCACC
GAGCTCAAGGACGCTCACAATCAGTTGGGCGATCTCAAACAAAAGATGTC
TGACACCATTATTTGCCCTAATTGTCAGGTCGACATCGAGGTCACGGAGG
CGATCTCCGCTCAACTGCGGGCTCAACTCAAGCAGCAGTTTGACGCTGAG
ACACGCAAACGGGACAGCGAGTTCGCTCAACGAGAGTCCACGCTCAAGGA
GTCTCGGCAGGAGCTCCTCCAGGCTCAGCAGGAATTGGAGCAATCTCGCG
AGGCGATCGACGAACAGGTCAGTGATCGACTTGGGCAGGAACGCAAACGC
ATTGCAGCCGAGGCCTTAGCGAAGGCTCAGGAGTCGGTCGGCACCGAGCT
CAAGGACGCTCACAATCAGTTGGGCGATCTCAAACAAAAG
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