mRNA_M-pyrifera_M_contig110202.2132.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110202.2132.1
Unique NamemRNA_M-pyrifera_M_contig110202.2132.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110202.2132.1 vs. uniprot
Match: D3BNB8_POLPP (Regulator of chromosome condensation domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BNB8_POLPP)

HSP 1 Score: 97.4 bits (241), Expect = 4.900e-21
Identity = 54/125 (43.20%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    1 EKFPEAEHFSVAGFMFLRFLCPAIVAPDAFGVVKTAPSSAVRRTLVLMSKVLQNLANGTEHA-KEEYMQPTDVFVATNLSRIRTYFKHISDLSRVPLDKVDVNFTIIPVPLVEESLTIVHRMIIK 372
            +KFP+ +H SV GF+FLRFLCPAI+AP   G+V  AP     R LVL+ KVLQNLANG E   KE +M P + F+  NLSR+  YF  ++D+     D + ++        V++ +  +H +I+K
Sbjct: 1527 KKFPDNKHSSVGGFVFLRFLCPAIIAPYTAGLVDEAPGPEATRALVLIGKVLQNLANGIEFGQKESFMIPVNRFIIGNLSRLNEYFDKLTDVPDYRGDYIPISTR----DEVQKDIRNIHLLIVK 1647          
BLAST of mRNA_M-pyrifera_M_contig110202.2132.1 vs. uniprot
Match: A0A152A7P7_9MYCE (Regulator of chromosome condensation domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A7P7_9MYCE)

HSP 1 Score: 96.7 bits (239), Expect = 9.030e-21
Identity = 54/124 (43.55%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    4 KFPEAEHFSVAGFMFLRFLCPAIVAPDAFGVVKTAPSSAVRRTLVLMSKVLQNLANGTEHA-KEEYMQPTDVFVATNLSRIRTYFKHISDLSRVPLDKVDVNFTIIPVPLVEESLTIVHRMIIK 372
            KFP+ +H SV GF+FLRFLCPAI++P   G+V  AP +   R L+L+ KVLQNLANG E   KE +M P + F+  NL R+  YF  ++D   VP +K   ++ I     V++ +  +H +I+K
Sbjct: 1617 KFPDNKHSSVGGFIFLRFLCPAIISPFNNGLVDEAPGTEANRALILIGKVLQNLANGIEFGQKESFMIPVNRFITGNLQRLYAYFDRLTD---VPDNKTG-DYVITSKEEVQKDIRNIHSLIVK 1736          
BLAST of mRNA_M-pyrifera_M_contig110202.2132.1 vs. uniprot
Match: A0A8J4PXJ4_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PXJ4_9MYCE)

HSP 1 Score: 96.7 bits (239), Expect = 9.050e-21
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 1
Query:    1 EKFPEAEHFSVAGFMFLRFLCPAIVAPDAFGVVKTAPSSAVRRTLVLMSKVLQNLANGTEHA-KEEYMQPTDVFVATNLSRIRTYFKHISDL 273
            +KFP+ +H SV GF+FLRFLCPAI+AP   G+V  AP     R LVL+ KVLQNLANG E   KE +M P + F+  N++R+ +YF  ++D+
Sbjct: 1726 KKFPDNKHSSVGGFIFLRFLCPAIIAPHTAGLVDEAPGPEATRALVLIGKVLQNLANGIEFGQKESFMIPVNRFIIGNVNRLNSYFDRLTDV 1817          
BLAST of mRNA_M-pyrifera_M_contig110202.2132.1 vs. uniprot
Match: UPI000644B484 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644B484)

HSP 1 Score: 95.9 bits (237), Expect = 1.680e-20
Identity = 50/100 (50.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:    1 EKFPEAEHFSVAGFMFLRFLCPAIVAPDAFGVVKTAPSSAVRRTLVLMSKVLQNLANGTEHA-KEEYMQPTDVFVATNLSRIRTYFKHISDLSRVPLDKV 297
            +KFP+ +H SV GF+FLRFLCPAI+AP   G+V  AP     R LVL+ KVLQNLANG E   KE +M P + F+  NL+R+  YF  ++D+     D V
Sbjct: 1538 KKFPDNKHSSVGGFIFLRFLCPAIIAPFTAGLVDEAPGPEASRALVLIGKVLQNLANGIEFGQKESFMLPVNRFIIGNLTRLYEYFDKLTDVPDYRADYV 1637          
BLAST of mRNA_M-pyrifera_M_contig110202.2132.1 vs. uniprot
Match: F0ZM19_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZM19_DICPU)

HSP 1 Score: 95.1 bits (235), Expect = 3.140e-20
Identity = 54/125 (43.20%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    1 EKFPEAEHFSVAGFMFLRFLCPAIVAPDAFGVVKTAPSSAVRRTLVLMSKVLQNLANGTEHA-KEEYMQPTDVFVATNLSRIRTYFKHISDLSRVPLDKVDVNFTIIPVPLVEESLTIVHRMIIK 372
            +KFP+ ++ SV GF+FLRFLCPAI+AP   G+V+  P     R LVL+ KVLQNLANG E   KE +M P + F+  N++R+  YF  ++D+S   L+K D   T      V+  +  +H +I+K
Sbjct: 1752 KKFPDNKYSSVGGFIFLRFLCPAILAPHTSGLVEEQPGPEATRALVLIGKVLQNLANGIEFGQKESFMIPVNRFIIGNVNRLNAYFDQLTDVS---LNKSDNYVTGNSKEEVQRDIRNIHLLIVK 1873          
BLAST of mRNA_M-pyrifera_M_contig110202.2132.1 vs. uniprot
Match: A0A1Y2DXH6_9PEZI (GTPase-activator protein for ras-like GTPase n=1 Tax=Pseudomassariella vexata TaxID=1141098 RepID=A0A1Y2DXH6_9PEZI)

HSP 1 Score: 94.0 bits (232), Expect = 8.030e-20
Identity = 48/96 (50.00%), Postives = 67/96 (69.79%), Query Frame = 1
Query:    4 KFPEAEHFSVAGFMFLRFLCPAIVAPDAFGVVKTAPSSAVRRTLVLMSKVLQNLANGTEH-AKEEYMQPTDVFVATNLSRIRTYFKHISDLSRVPL 288
            KFPEA++ +V  F+FLRF CPAIVAPDA G+V TAPS  +RR L+L++KV+QNLAN     AKE YM P +  +  N+ ++ T+ + IS    +P+
Sbjct: 1343 KFPEAKYTAVGAFIFLRFFCPAIVAPDAEGLVSTAPSKEMRRGLLLIAKVVQNLANNVLFGAKEPYMFPLNDLLTQNIYKVTTFLREISVPPEIPV 1438          
BLAST of mRNA_M-pyrifera_M_contig110202.2132.1 vs. uniprot
Match: UPI001B36D16B (uncharacterized protein n=1 Tax=Cryphonectria parasitica EP155 TaxID=660469 RepID=UPI001B36D16B)

HSP 1 Score: 93.6 bits (231), Expect = 1.090e-19
Identity = 47/90 (52.22%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    4 KFPEAEHFSVAGFMFLRFLCPAIVAPDAFGVVKTAPSSAVRRTLVLMSKVLQNLANGTEH-AKEEYMQPTDVFVATNLSRIRTYFKHISD 270
            +FPEA++ +V  F+FLRF CPAIVAP+A G+V T PS  +RR L+L++KV+QNLAN     AKE YM P + F+  N+ R+ T+ + ISD
Sbjct: 1354 RFPEAKYTAVGAFIFLRFFCPAIVAPEAEGLVSTLPSKEMRRGLLLIAKVVQNLANNVLFGAKEPYMFPLNDFLTQNIYRVTTFLREISD 1443          
BLAST of mRNA_M-pyrifera_M_contig110202.2132.1 vs. uniprot
Match: A0A2J6TQI9_9HELO (Ras-GAP domain-containing protein n=3 Tax=Hyaloscypha hepaticicola/Rhizoscyphus ericae species complex TaxID=186449 RepID=A0A2J6TQI9_9HELO)

HSP 1 Score: 93.2 bits (230), Expect = 1.490e-19
Identity = 48/96 (50.00%), Postives = 67/96 (69.79%), Query Frame = 1
Query:    1 EKFPEAEHFSVAGFMFLRFLCPAIVAPDAFGVVKTAPSSAVRRTLVLMSKVLQNLANGTEH-AKEEYMQPTDVFVATNLSRIRTYFKHISDLSRVP 285
            ++FPEA+  +V  F+FLRF CPAIVAPDA G++ +APS  +RR L+L++KV+QNLAN     AKE YM P + F+  N+ R+ T+ + IS    VP
Sbjct: 1370 KRFPEAKFTAVGAFIFLRFFCPAIVAPDAEGLITSAPSKEMRRGLLLIAKVVQNLANNVLFGAKEPYMFPLNDFLTQNIYRVTTFLREISVPPNVP 1465          
BLAST of mRNA_M-pyrifera_M_contig110202.2132.1 vs. uniprot
Match: A0A218Z8S6_9HELO (Ras-GAP domain-containing protein n=1 Tax=Marssonina coronariae TaxID=503106 RepID=A0A218Z8S6_9HELO)

HSP 1 Score: 92.8 bits (229), Expect = 2.040e-19
Identity = 47/90 (52.22%), Postives = 64/90 (71.11%), Query Frame = 1
Query:    1 EKFPEAEHFSVAGFMFLRFLCPAIVAPDAFGVVKTAPSSAVRRTLVLMSKVLQNLANGTEH-AKEEYMQPTDVFVATNLSRIRTYFKHIS 267
            +KFPEA+  +V  F+FLRF CPAIVAPD  G++ TAPS  +RR L+L++KV+QNLAN     AKE YM P + F+  N+ R+ T+ + IS
Sbjct: 1324 KKFPEAKFTAVGAFIFLRFFCPAIVAPDVEGLIATAPSKEMRRGLLLIAKVVQNLANNVLFGAKEPYMFPLNDFLTQNIYRVTTFLREIS 1413          
BLAST of mRNA_M-pyrifera_M_contig110202.2132.1 vs. uniprot
Match: A0A420YA82_9PEZI (Ras GTPase activating protein ira2 n=2 Tax=Coniochaeta pulveracea TaxID=177199 RepID=A0A420YA82_9PEZI)

HSP 1 Score: 92.8 bits (229), Expect = 2.040e-19
Identity = 45/89 (50.56%), Postives = 65/89 (73.03%), Query Frame = 1
Query:    4 KFPEAEHFSVAGFMFLRFLCPAIVAPDAFGVVKTAPSSAVRRTLVLMSKVLQNLANGTEH-AKEEYMQPTDVFVATNLSRIRTYFKHIS 267
            +FPEA++ +V  F+FLRF CPAIVAP+A G+V TAPS  +RR L+L++K++QNLAN     AKE YM P + F+  N+ ++ T+ + IS
Sbjct: 1352 RFPEAKYTAVGAFIFLRFFCPAIVAPEAEGLVTTAPSKEMRRGLLLIAKIIQNLANNVLFGAKEPYMFPLNTFLTQNIYKVTTFLREIS 1440          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110202.2132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D3BNB8_POLPP4.900e-2143.20Regulator of chromosome condensation domain-contai... [more]
A0A152A7P7_9MYCE9.030e-2143.55Regulator of chromosome condensation domain-contai... [more]
A0A8J4PXJ4_9MYCE9.050e-2151.09Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
UPI000644B4841.680e-2050.00hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F0ZM19_DICPU3.140e-2043.20Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A1Y2DXH6_9PEZI8.030e-2050.00GTPase-activator protein for ras-like GTPase n=1 T... [more]
UPI001B36D16B1.090e-1952.22uncharacterized protein n=1 Tax=Cryphonectria para... [more]
A0A2J6TQI9_9HELO1.490e-1950.00Ras-GAP domain-containing protein n=3 Tax=Hyaloscy... [more]
A0A218Z8S6_9HELO2.040e-1952.22Ras-GAP domain-containing protein n=1 Tax=Marssoni... [more]
A0A420YA82_9PEZI2.040e-1950.56Ras GTPase activating protein ira2 n=2 Tax=Conioch... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110202contigM-pyrifera_M_contig110202:189..566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog5786.XP_003288451.1
KEGG koko:K11493,ko:K20683
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rho guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759,KOG1826@1,KOG1826@2759,KOG3522@1,KOG3522@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036,ko04131
Exons1
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.944931-CDS-M-pyrifera_M_contig110202:188..5661622815612.944931-CDS-M-pyrifera_M_contig110202:188..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110202 189..566 -
1692277487.410063-CDS-M-pyrifera_M_contig110202:188..5661692277487.410063-CDS-M-pyrifera_M_contig110202:188..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110202 189..566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110202.2132.1prot_M-pyrifera_M_contig110202.2132.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110202 189..566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110202.2132.1

>prot_M-pyrifera_M_contig110202.2132.1 ID=prot_M-pyrifera_M_contig110202.2132.1|Name=mRNA_M-pyrifera_M_contig110202.2132.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
EKFPEAEHFSVAGFMFLRFLCPAIVAPDAFGVVKTAPSSAVRRTLVLMSK
VLQNLANGTEHAKEEYMQPTDVFVATNLSRIRTYFKHISDLSRVPLDKVD
VNFTIIPVPLVEESLTIVHRMIIKVL
back to top

mRNA from alignment at M-pyrifera_M_contig110202:189..566-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110202.2132.1 ID=mRNA_M-pyrifera_M_contig110202.2132.1|Name=mRNA_M-pyrifera_M_contig110202.2132.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig110202:189..566- (Macrocystis pyrifera P11B4 male)
GAGAAGTTCCCGGAGGCGGAGCACTTCAGTGTGGCGGGGTTCATGTTCCT GCGCTTCCTGTGCCCTGCCATCGTCGCGCCAGACGCATTTGGCGTCGTGA AGACGGCACCCTCATCGGCGGTTCGGCGCACGCTGGTGCTGATGTCGAAG GTGTTGCAAAACCTCGCCAACGGCACTGAGCATGCGAAAGAGGAGTACAT GCAGCCCACTGACGTCTTCGTCGCCACCAACCTGTCTCGCATCCGCACCT ACTTCAAGCACATATCCGACCTCTCGCGCGTGCCGCTAGACAAGGTGGAC GTCAACTTCACCATCATCCCCGTGCCCCTTGTCGAGGAGAGCCTCACCAT CGTACACCGGATGATCATCAAGGTACTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig110202:189..566-

>mRNA_M-pyrifera_M_contig110202.2132.1 ID=mRNA_M-pyrifera_M_contig110202.2132.1|Name=mRNA_M-pyrifera_M_contig110202.2132.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig110202:189..566- (Macrocystis pyrifera P11B4 male)
GAGAAGTTCCCGGAGGCGGAGCACTTCAGTGTGGCGGGGTTCATGTTCCT
GCGCTTCCTGTGCCCTGCCATCGTCGCGCCAGACGCATTTGGCGTCGTGA
AGACGGCACCCTCATCGGCGGTTCGGCGCACGCTGGTGCTGATGTCGAAG
GTGTTGCAAAACCTCGCCAACGGCACTGAGCATGCGAAAGAGGAGTACAT
GCAGCCCACTGACGTCTTCGTCGCCACCAACCTGTCTCGCATCCGCACCT
ACTTCAAGCACATATCCGACCTCTCGCGCGTGCCGCTAGACAAGGTGGAC
GTCAACTTCACCATCATCCCCGTGCCCCTTGTCGAGGAGAGCCTCACCAT
CGTACACCGGATGATCATCAAGGTACTTGAGAAGTTCCCGGAGGCGGAGC
ACTTCAGTGTGGCGGGGTTCATGTTCCTGCGCTTCCTGTGCCCTGCCATC
GTCGCGCCAGACGCATTTGGCGTCGTGAAGACGGCACCCTCATCGGCGGT
TCGGCGCACGCTGGTGCTGATGTCGAAGGTGTTGCAAAACCTCGCCAACG
GCACTGAGCATGCGAAAGAGGAGTACATGCAGCCCACTGACGTCTTCGTC
GCCACCAACCTGTCTCGCATCCGCACCTACTTCAAGCACATATCCGACCT
CTCGCGCGTGCCGCTAGACAAGGTGGACGTCAACTTCACCATCATCCCCG
TGCCCCTTGTCGAGGAGAGCCTCACCATCGTACACCGGATGATCATCAAG
GTACTT
back to top