mRNA_M-pyrifera_M_contig110068.2103.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Match: A0A433B9U9_9FUNG (DNA-directed RNA polymerase (Fragment) n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433B9U9_9FUNG) HSP 1 Score: 197 bits (501), Expect = 1.480e-55 Identity = 103/182 (56.59%), Postives = 130/182 (71.43%), Query Frame = 1
Query: 1 TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFLLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQIRIKFEMDIRRGENRAYKSEKYFKRCTER-SIDVGARLEYFLATGNIQSNTGLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR 543
T++QCLAYLG KFR + + D++VGE L+R+ VLVHL D DKFN L+ M+RKLYALV+G DNPDS +Q+ILL GHLY MI KEKL++WL ++ +D+R+G + + KYF R R DVG +L YFLATGN+ SNTGLDL Q +GY IVAEKLN+ RYL+HFR VHR
Sbjct: 302 TRDQCLAYLGDKFRVVMGFDDDFLDREVGEGLLRKIVLVHLIDRRDKFNLLVYMIRKLYALVSGACCADNPDSPQHQEILLGGHLYGMIFKEKLEDWLTTVKQHITLDVRKGHAVDFFNSKYFTRTLARVPSDVGQKLSYFLATGNLVSNTGLDLQQATGYTIVAEKLNFYRYLSHFRCVHR 483
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Match: A0A0L0HQS5_SPIPD (DNA-directed RNA polymerase subunit beta n=3 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HQS5_SPIPD) HSP 1 Score: 196 bits (497), Expect = 1.320e-54 Identity = 99/185 (53.51%), Postives = 133/185 (71.89%), Query Frame = 1
Query: 1 TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFLLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQIRIKFEMDIRRGENRA-YKSEKYFKRCTER---SIDVGARLEYFLATGNIQSNTGLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR 543
T+ QCL+YLGSKF + M ++QVGE ++R VLVHLED +KF+ L+ M++KLYALVAG+ DNPDS +Q+ILLPGHLYL I+KEK+ +WL I+ + + D+RR + +KY + ++ S D+G ++EYFLATGN+ SNTGLDL Q SGY IVAEKLN+ RY++HFR VHR
Sbjct: 372 TRKQCLSYLGSKFAVMMDSPEDMFEEQVGEEFLKRVVLVHLEDSREKFDMLIFMMQKLYALVAGECAPDNPDSPQHQEILLPGHLYLGIMKEKMGDWLSAIKAQIQQDLRRMPASVDFFDKKYLSKVFQKTGGSADIGRKMEYFLATGNLVSNTGLDLQQTSGYTIVAEKLNFYRYISHFRSVHR 556
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Match: A0A1Y1YSZ3_9FUNG (DNA-directed RNA polymerase subunit beta n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YSZ3_9FUNG) HSP 1 Score: 194 bits (493), Expect = 4.370e-54 Identity = 101/183 (55.19%), Postives = 133/183 (72.68%), Query Frame = 1
Query: 1 TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFLLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQIRIKFEMDIRRGENRA-YKSEKYF-KRCTERSIDVGARLEYFLATGNIQSNTGLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR 543
T+ QCL YLG KFR L ++ QVGE L+++ VLVHLED DKFN L+ M++KLYALV+G DNPDS +Q+ILL GHLYL I+KEKL++W++ R + +D+RRG + + +KY K ++ D+G +L+YFLATGN+ SNTGLDL Q SGY IVAEKLN+LRY++HFR VHR
Sbjct: 307 TRTQCLEYLGDKFRIVLNLPPDYTNAQVGEALLKKIVLVHLEDNRDKFNLLVFMIQKLYALVSGACCADNPDSPQHQEILLGGHLYLNILKEKLEDWIEGFRRQVALDVRRGLSSVNFFDKKYIVKALSKVPSDIGQKLQYFLATGNLISNTGLDLQQVSGYTIVAEKLNFLRYISHFRCVHR 489
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Match: A0A197JP97_9FUNG (DNA-directed RNA polymerase subunit beta n=2 Tax=Mortierellaceae TaxID=4854 RepID=A0A197JP97_9FUNG) HSP 1 Score: 192 bits (489), Expect = 1.520e-53 Identity = 97/185 (52.43%), Postives = 132/185 (71.35%), Query Frame = 1
Query: 1 TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFLLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQIRIKFEMDIRRGENRA-YKSEKYFKRCTERSI---DVGARLEYFLATGNIQSNTGLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR 543
T+ QCLAYLG KFR + SD +VGE L+R+ VLVHL+ DKFN L+ M+RK+YALVAG+ DNPDS +Q++LL GHLY I+KEK+++WL+ IR + D+RR + + +YF + +++ DVG+++ YFLATGN+ SNTGLDL Q +GY IVAEKLN+ R+LAHFR +HR
Sbjct: 305 TREQCLAYLGDKFRVVMNFPEDYSDVEVGEGLLRKIVLVHLKSNRDKFNLLIFMIRKVYALVAGECSPDNPDSPQHQEVLLGGHLYGSIIKEKIEDWLNGIRAQINQDVRRKVTGVDFMNNQYFTKTLQKTSGLQDVGSKMSYFLATGNLVSNTGLDLQQATGYTIVAEKLNFYRFLAHFRCIHR 489
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Match: A0A8H7BQ95_9FUNG (DNA-directed RNA polymerase subunit beta n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BQ95_9FUNG) HSP 1 Score: 191 bits (485), Expect = 5.250e-53 Identity = 97/183 (53.01%), Postives = 131/183 (71.58%), Query Frame = 1
Query: 1 TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFLLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQIRIKFEMDIRRGENRA-YKSEKYFKRCTER-SIDVGARLEYFLATGNIQSNTGLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR 543
T++QCLAYLG KFR + S +SDK+VGE L+++ VLVHL D DKFN ++ M+RKLY+LV+G+ DNPD+ +Q++LL GHLY MI+KEK+ +WL I+ + DIR R + + YF + + + DVG +L YFLATGN+ S TGLDL Q SGY IVAEKLN+ RY++HFR +HR
Sbjct: 309 TRDQCLAYLGEKFRVIMGLSEDLSDKEVGEALLQKIVLVHLPDNRDKFNLMVYMIRKLYSLVSGECCPDNPDAPQHQEVLLGGHLYNMILKEKIFDWLTSIKQQVRNDIRMAPQRVDFFDKNYFLQAVRKLNSDVGVKLSYFLATGNLVSKTGLDLQQASGYTIVAEKLNFYRYISHFRCIHR 491
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Match: A0A433QYV5_9FUNG (DNA-directed RNA polymerase subunit beta n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QYV5_9FUNG) HSP 1 Score: 189 bits (481), Expect = 1.840e-52 Identity = 102/182 (56.04%), Postives = 126/182 (69.23%), Query Frame = 1
Query: 1 TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFLLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQIRIKFEMDIRRGENRAYKSEKYFKRCTER-SIDVGARLEYFLATGNIQSNTGLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR 543
T++QCLAYLG KFR + + D++VGE L+R+ VLVHL D DKFN L+ M+RKLYALV+G DNPDS +Q+ILL GHLY MI KEKL++WL ++ +D+R KYF R R DVG +L YFLATGN+ SNTGLDL Q +GY IVAEKLN+ RYL+HFR VHR
Sbjct: 302 TRDQCLAYLGDKFRVVMGFDDDFLDREVGEGLLRKIVLVHLIDRRDKFNLLVYMIRKLYALVSGACCADNPDSPQHQEILLGGHLYGMIFKEKLEDWLTTVKQHITLDVR----------KYFTRTLARVPSDVGQKLSYFLATGNLVSNTGLDLQQATGYTIVAEKLNFYRYLSHFRCVHR 473
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Match: B6K4L6_SCHJY (DNA-directed RNA polymerase subunit beta n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K4L6_SCHJY) HSP 1 Score: 189 bits (480), Expect = 2.500e-52 Identity = 98/183 (53.55%), Postives = 128/183 (69.95%), Query Frame = 1
Query: 1 TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFLLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQIRIKFEMDIRRGENRA-YKSEKYFKRCTER-SIDVGARLEYFLATGNIQSNTGLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR 543
TQ Q L YLGSKFR L + ++D +VG L+RR VLV+L D DKF LL M+RKLYALVAG+ DNPDS +Q+ILL G L+ I+KEK+ +WL IR + + D+RRG + +KY R + + D+G RL+YFL+TGN+ SNTGLDL Q +GY +VAEKLN+ R+L+HFR VHR
Sbjct: 299 TQTQSLQYLGSKFRVVLGLAEDLTDVEVGRTLLRRVVLVNLPDNRDKFRMLLFMIRKLYALVAGECCADNPDSPQHQEILLGGFLFAQIIKEKIDDWLTSIRAQIQQDVRRGAAGIDFSDKKYLSRVFSKVNSDIGTRLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHFRMVHR 481
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Match: A0A507E996_9FUNG (DNA-directed RNA polymerase subunit beta n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E996_9FUNG) HSP 1 Score: 189 bits (479), Expect = 3.440e-52 Identity = 95/185 (51.35%), Postives = 132/185 (71.35%), Query Frame = 1
Query: 1 TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFLLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQIRIKFEMDIRRGENRA-YKSEKYFKRC---TERSIDVGARLEYFLATGNIQSNTGLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR 543
T+ QCL+YLGSKF + + ++ VG ++R VLVHLED +KF+ L+ M++KLYALVAG+ DNPDS +Q+ILLPGHLY+ I+KEK+ +WL I+++ +MD+R + + +KY + T + D+G ++EYFLATGN+ SNTGLDL Q SGY IVAEKLN+ RY++HFR VHR
Sbjct: 311 TRKQCLSYLGSKFAVMMDSPDDQYEEDVGIEFLKRVVLVHLEDDREKFDMLIFMMQKLYALVAGECSADNPDSPQHQEILLPGHLYMSIMKEKMADWLVAIKLQIQMDLRLKPAQVDFADKKYMGKVFSKTGGAADIGRKMEYFLATGNLVSNTGLDLQQTSGYTIVAEKLNFYRYISHFRSVHR 495
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Match: A0A1A5ZTK8_9TREE (DNA-directed RNA polymerase subunit beta n=7 Tax=Kwoniella TaxID=490731 RepID=A0A1A5ZTK8_9TREE) HSP 1 Score: 189 bits (479), Expect = 3.460e-52 Identity = 96/182 (52.75%), Postives = 128/182 (70.33%), Query Frame = 1
Query: 1 TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFLLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQIRIKFEMDIRRGENRAYKSEKYFKRC-TERSIDVGARLEYFLATGNIQSNTGLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR 543
T QCL YLG KFR L C + ++ QVG L+ R VLVHL + DKF L+ MLRKLY+LV+G DNPDS + ++LLPG LY MI+KE+ + L+ +R++ + D+R+G+ R++ KYF T+ + D+GA+L YFLATGN+ S TGLDL Q SGY IVAEKLN+ RYL+HFR +HR
Sbjct: 347 TGEQCLDYLGEKFRVVLGCPDDWNNIQVGSFLLSRVVLVHLPNPRDKFRMLIFMLRKLYSLVSGASCADNPDSPQHHEVLLPGFLYGMIIKERFDDCLNAVRLQIQQDLRQGKARSFSDPKYFASVLTKTNWDIGAKLSYFLATGNLVSPTGLDLQQTSGYTIVAEKLNFYRYLSHFRCIHR 528
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Match: A0A427XJC3_9TREE (DNA-directed RNA polymerase subunit beta n=1 Tax=Apiotrichum porosum TaxID=105984 RepID=A0A427XJC3_9TREE) HSP 1 Score: 188 bits (478), Expect = 4.690e-52 Identity = 95/182 (52.20%), Postives = 126/182 (69.23%), Query Frame = 1
Query: 1 TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFLLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQIRIKFEMDIRRGENRAYKSEKYFKRCTER-SIDVGARLEYFLATGNIQSNTGLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR 543
T +QCL YLG KFR + C ++ QVG L+++ VLVHL + +KF L+ MLRKLY++VAG DNPDS + ++LLPG LY MI+KE+ E L +R++ DIR+G + + S KYF ++ + DVGA+L YFLATGN+ S TG+DL Q SG+ IVAEKLNY RYLAHFR +HR
Sbjct: 327 TGSQCLDYLGDKFRVVMNCPEDWTNSQVGAFLLQKVVLVHLPNPREKFRMLIFMLRKLYSMVAGTSCPDNPDSPQHHEVLLPGFLYAMIIKERFDESLQAVRLQIAQDIRQGRAKDFTSAKYFPSVLQKVNFDVGAKLSYFLATGNLVSPTGIDLQQTSGFTIVAEKLNYYRYLAHFRCIHR 508 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig110068.2103.1 >prot_M-pyrifera_M_contig110068.2103.1 ID=prot_M-pyrifera_M_contig110068.2103.1|Name=mRNA_M-pyrifera_M_contig110068.2103.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=181bp TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFback to top mRNA from alignment at M-pyrifera_M_contig110068:2..599- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig110068.2103.1 ID=mRNA_M-pyrifera_M_contig110068.2103.1|Name=mRNA_M-pyrifera_M_contig110068.2103.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=598bp|location=Sequence derived from alignment at M-pyrifera_M_contig110068:2..599- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig110068:2..599- >mRNA_M-pyrifera_M_contig110068.2103.1 ID=mRNA_M-pyrifera_M_contig110068.2103.1|Name=mRNA_M-pyrifera_M_contig110068.2103.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1086bp|location=Sequence derived from alignment at M-pyrifera_M_contig110068:2..599- (Macrocystis pyrifera P11B4 male)back to top |