mRNA_M-pyrifera_M_contig9029.20936.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9029.20936.1
Unique NamemRNA_M-pyrifera_M_contig9029.20936.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Match: D8LQN5_ECTSI (Similar to putative chromatin structure regulator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN5_ECTSI)

HSP 1 Score: 343 bits (881), Expect = 5.090e-117
Identity = 159/195 (81.54%), Postives = 180/195 (92.31%), Query Frame = 1
Query:   73 MHPQFKNLTHLEAEQYLKETSDSRGEALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLATPKYIGGTTGDVEKLLLEQKEQSPNRIPYMMCKKGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELFKWFKLNAQQLGRSSRTGRK 657
            MHPQFKN THLEAE++LKE SD+RGEA+IRPSSKGPDHLSLTWMW+EGEFMHTDI+E+GKQ GSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLA+ KY  GT+ +VEK L +QK+ +PNRIPY+MC++G PG++NLMYLP  TVRK VVE++PEGY+MSKRCFKTLPELFKWFKLNAQQLGRSSRT RK
Sbjct:    1 MHPQFKNFTHLEAEEFLKEMSDTRGEAVIRPSSKGPDHLSLTWMWVEGEFMHTDIKELGKQPGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLASDKYNPGTSAEVEKTLQKQKDDAPNRIPYLMCRRGVPGYVNLMYLPAHTVRKIVVEVSPEGYVMSKRCFKTLPELFKWFKLNAQQLGRSSRTSRK 195          
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Match: A0A7M7PAU0_STRPU (Transcription elongation factor spt6 n=3 Tax=Echinacea TaxID=7674 RepID=A0A7M7PAU0_STRPU)

HSP 1 Score: 151 bits (382), Expect = 1.620e-38
Identity = 82/198 (41.41%), Postives = 117/198 (59.09%), Query Frame = 1
Query:   37 AARAGVRHPRSIMHPQFKNLTHLEAEQYLKETSDSRGEALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLATPKYI---GGTTGDVEKLLLEQKEQSPNRIPYMMCK-KGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELFKWFKLN 618
            AA +     R I+HP F+N+T+ +AE+ ++E+    G+ +IRPSSKG DHL++TW   +G + H D+QE GK     L   LKIG EE+EDLDEII+R +      V D+ +   Y    GG+   +EK L  +K+++PNRIPY MC  +  PG   L Y P    R   V ITP+GY    + F T+  L +WFK++
Sbjct: 1453 AAASSTYVKRVIVHPSFQNITYKQAEKVMRESDV--GDVIIRPSSKGADHLTVTWKVEDGVYQHIDVQEEGKDNDFSLGSTLKIGEEEFEDLDEIIARHIQPMAAFVRDVTSHKYYHAVEGGSKELMEKYLQTEKKKTPNRIPYFMCLCQNYPGKFLLSYQPRSKGRHEYVSITPDGYKFRGQTFTTINSLHRWFKVH 1648          
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Match: UPI0018CFF9F7 (transcription elongation factor SPT6 n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018CFF9F7)

HSP 1 Score: 151 bits (381), Expect = 2.180e-38
Identity = 79/186 (42.47%), Postives = 111/186 (59.68%), Query Frame = 1
Query:   64 RSIMHPQFKNLTHLEAEQYLKETSDSRGEALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLATPKY--IGGTTGDVEKLLLEQKEQSPNRIPYMM-CKKGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELFKWFK 612
            R I+HP F N++  EAE+ +   +  +GE ++RPSSKG DHL++TW   EG + H D++E GK+    L   L IGG E+EDLDEII+R V+    L  DL++   Y  +GG     E++L E K ++PN+I Y++   K  PG   L YLP    R   V +TP+GY   +R F +L  L KWFK
Sbjct: 1327 RVIVHPAFHNISFAEAEKLMDNMA--QGEVIVRPSSKGSDHLTVTWKVAEGIYQHIDVREEGKENAFSLGKSLWIGGSEFEDLDEIIARHVTPMAGLARDLVSFKYYKPLGGIRDKAEEILKEDKAKNPNKIHYIISAAKNYPGRFLLSYLPSSRCRHEYVSVTPDGYKFRQRMFDSLGALLKWFK 1510          
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Match: A0A2A4IUW9_HELVI (Uncharacterized protein n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4IUW9_HELVI)

HSP 1 Score: 145 bits (367), Expect = 2.390e-37
Identity = 77/186 (41.40%), Postives = 112/186 (60.22%), Query Frame = 1
Query:   64 RSIMHPQFKNLTHLEAEQYLKETSDSRGEALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLATPKY--IGGTTGDVEKLLLEQKEQSPNRIPYMM-CKKGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELFKWFK 612
            R I+HP F N++  EAE+ + + +  +GE ++RPSSKG DHL++TW   +G + H D++E GK+    L   L I G E+EDLDEII+R V+    L  DL+A   Y  +GG     E++L E+K ++PN+I Y++   K  PG   L YLP   V    V +TP+GY   +R F +L  L +WFK
Sbjct:  165 RVIVHPAFHNISFAEAEKLMDKMA--QGEVIVRPSSKGSDHLTVTWKVADGIYQHIDVREEGKENAFSLGRSLWIQGSEFEDLDEIIARHVTPMAGLARDLIAYKYYKPLGGMRDKAEEILKEEKARNPNKIHYVISAAKNYPGRFLLSYLPRARVTHEYVSVTPDGYRYRQRNFDSLAGLLRWFK 348          
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Match: UPI0006C95778 (transcription elongation factor SPT6 isoform X1 n=2 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C95778)

HSP 1 Score: 148 bits (373), Expect = 2.570e-37
Identity = 78/187 (41.71%), Postives = 111/187 (59.36%), Query Frame = 1
Query:   64 RSIMHPQFKNLTHLEAEQYLKETSDSRGEALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLATPKYIGGTTGDVEK---LLLEQKEQSPNRIPYMM-CKKGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELFKWFK 612
            R I+HP F+N+T+ +AE+ ++  +  +GEA+IRPSSKG DHL++TW   EG   H D++E GK+    L   L IG EE+EDLDEII+R ++       +LL    Y G   G  EK   LL EQK+++P  IPY++   K  PG   L YLP    R   + +TP+G+      F  + +LF+WFK
Sbjct: 1332 RVIIHPSFRNITYADAEKLMQ--TMQQGEAIIRPSSKGDDHLTVTWKVTEGIHQHIDVREEGKENKYSLGRSLWIGNEEFEDLDEIIARHINPMAAYATELLDFKYYKGSIMGSKEKSEELLKEQKKENPGGIPYVVSAAKNYPGKFMLSYLPRTRCRHEYISVTPDGFRFRTNTFSRVSDLFRWFK 1516          
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Match: A0A1B6MV82_9HEMI (SH2 domain-containing protein (Fragment) n=2 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6MV82_9HEMI)

HSP 1 Score: 139 bits (349), Expect = 7.520e-37
Identity = 74/187 (39.57%), Postives = 109/187 (58.29%), Query Frame = 1
Query:   64 RSIMHPQFKNLTHLEAEQYLKETSDSRGEALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLATPKYI---GGTTGDVEKLLLEQKEQSPNRIPYMMC-KKGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELFKWFK 612
            R I+HP F N++ +EAE+ +   +  +GE +IRPSSKG DHL++TW   +G + H D++E GK+    L   L IG EE+EDLDEII+R V+       DL +   Y    GG     E+ L E+K+++P +I Y++   K  PG   L YLP    +  ++ +TPEG+    + F T+   FKWFK
Sbjct:   50 RVIVHPAFHNISFVEAEKIM--VNMEQGECIIRPSSKGADHLTVTWKVADGIYQHIDVREEGKENAFSLGQSLWIGNEEFEDLDEIIARHVNPMAAHARDLFSFRYYKDTEGGLKDKAEEFLKEEKKKNPQKIHYIISVSKNYPGKFLLSYLPRNRCKHELITVTPEGFRFRGQTFDTVGMCFKWFK 234          
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Match: UPI001F9BC97C (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F9BC97C)

HSP 1 Score: 146 bits (369), Expect = 8.790e-37
Identity = 76/186 (40.86%), Postives = 111/186 (59.68%), Query Frame = 1
Query:   64 RSIMHPQFKNLTHLEAEQYLKETSDSRGEALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLATPKY--IGGTTGDVEKLLLEQKEQSPNRIPYMM-CKKGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELFKWFK 612
            R I+HP F N++  EAE+ +++    +GE ++RPSSKG DHL++TW   +G + H D++E GK+    L   L I G E+EDLDEII+R V+    L  DL+    Y  +GG     E++L E+K ++PN+I Y++   K  PG   L YLP        V +TP+GY   +R F +LP L +WFK
Sbjct: 1224 RVIVHPAFHNISFAEAEKLMEKMG--QGEVIVRPSSKGSDHLTVTWKVADGIYQHIDVREEGKENAFSLGRSLWIQGSEFEDLDEIIARHVTPMAGLARDLIGYKYYKPLGGMRDKAEEILKEEKARNPNKIHYVISAAKNYPGRFLLSYLPRARCTHEYVSVTPDGYKYRQRTFDSLPGLLRWFK 1407          
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Match: UPI001CF25431 (transcription elongation factor SPT6-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF25431)

HSP 1 Score: 146 bits (369), Expect = 8.810e-37
Identity = 83/204 (40.69%), Postives = 114/204 (55.88%), Query Frame = 1
Query:   22 KGDSSAARAGVRHP----RSIMHPQFKNLTHLEAEQYLKETSDSRGEALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLATPKY--IGGTTGDVEKLLLEQKEQSPNRIPYMMCK-KGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELFKWFK 612
            K +  AA+     P    R I+HP FKN++  EAE+ L E    +GE ++RPSSKG DHL++TW   EG + H D++E GK+    L   L I  EE+EDLDEII+R V        ++L    Y  + G    +E++LL +K ++P RIPY++   K  PG   L YLP    R   V +TP+G+    R   TL  LFKWFK
Sbjct: 1274 KKEEEAAKKKANRPKYVKRVIVHPSFKNISFKEAERLLAEME--QGECIVRPSSKGADHLTVTWKVDEGVYQHVDVREEGKENAFSLGRSLWIDSEEFEDLDEIIARHVQPMASFAREILNHKNYRAVDGNKTKLEEILLAEKRKAPQRIPYLLSTTKDFPGKFFLGYLPRVKARVEYVSVTPDGFRYRGRVHATLNGLFKWFK 1475          
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Match: UPI0008408D01 (transcription elongation factor SPT6-like n=1 Tax=Ceratina calcarata TaxID=156304 RepID=UPI0008408D01)

HSP 1 Score: 145 bits (367), Expect = 1.640e-36
Identity = 78/187 (41.71%), Postives = 111/187 (59.36%), Query Frame = 1
Query:   64 RSIMHPQFKNLTHLEAEQYLKETSDSRGEALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLATPKY---IGGTTGDVEKLLLEQKEQSPNRIPYMM-CKKGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELFKWFK 612
            R I+HP F N++  EAE+ ++     +GEA+IRPSSKG DHL++TW   +  + H DI+E GK+    L   L IG EE+EDLDEII+R ++  +   ++LL    Y   + G     E++L EQK+Q+P  IPY++   K  PG   L YLP    R   V +TPEG+    + F  + ELF+WFK
Sbjct: 1316 RVIIHPSFHNVSFAEAEKLMQNVK--QGEAIIRPSSKGSDHLTVTWKVTDNIYQHIDIREEGKENTFSLGRSLWIGSEEFEDLDEIIARHINPMSAYASELLDFKYYKLNVEGVKEKAEEILKEQKKQNPGGIPYIVSAAKNYPGKFLLSYLPRTRCRHEYVTVTPEGFRFRSQMFSKVNELFRWFK 1500          
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Match: A0A8J2JMM3_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2JMM3_9HEXA)

HSP 1 Score: 145 bits (367), Expect = 1.650e-36
Identity = 77/188 (40.96%), Postives = 116/188 (61.70%), Query Frame = 1
Query:   64 RSIMHPQFKNLTHLEAEQYLKETSDSRGEALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEEYEDLDEIISRRVSA----CNDLVNDLLATPKYIGGTTGDVEKLLLEQKEQSPNRIPYMM-CKKGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELFKWFK 612
            R I+HP FKN++  E+E+ +++    +GE ++RPSSKG DHL++TW   +G + H D++E GK+    L   L IG EE+EDLDEII+R V+     C D++N    T  + GG     E+ LLE+K+++ N+I YM+   K  PG   + YLP   V   ++ ITPEGY   ++ F +L ++ KWFK
Sbjct: 1413 RVIVHPSFKNISFRESEKLMEQMD--QGEVIVRPSSKGADHLTVTWKVCDGIYQHIDVREEGKENAFSLGQSLWIGKEEFEDLDEIIARHVNPMAGYCRDIMNYKYHTTAF-GGVRQKAEEYLLEEKKKNANKIHYMLHATKEFPGRFYISYLPRNKVVHELITITPEGYRFRQQNFDSLNQVLKWFK 1597          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQN5_ECTSI5.090e-11781.54Similar to putative chromatin structure regulator ... [more]
A0A7M7PAU0_STRPU1.620e-3841.41Transcription elongation factor spt6 n=3 Tax=Echin... [more]
UPI0018CFF9F72.180e-3842.47transcription elongation factor SPT6 n=1 Tax=Plute... [more]
A0A2A4IUW9_HELVI2.390e-3741.40Uncharacterized protein n=1 Tax=Heliothis virescen... [more]
UPI0006C957782.570e-3741.71transcription elongation factor SPT6 isoform X1 n=... [more]
A0A1B6MV82_9HEMI7.520e-3739.57SH2 domain-containing protein (Fragment) n=2 Tax=G... [more]
UPI001F9BC97C8.790e-3740.86Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
UPI001CF254318.810e-3740.69transcription elongation factor SPT6-like n=2 Tax=... [more]
UPI0008408D011.640e-3641.71transcription elongation factor SPT6-like n=1 Tax=... [more]
A0A8J2JMM3_9HEXA1.650e-3640.96Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9029contigM-pyrifera_M_contig9029:6842..10486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score344.7
Seed ortholog evalue3.1e-92
Seed eggNOG ortholog2880.D8LQN5
Preferred nameSPT6
KEGG koko:K11292
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000083,GO:0000122,GO:0000183,GO:0000228,GO:0000278,GO:0000414,GO:0000429,GO:0000430,GO:0000433,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0000988,GO:0000990,GO:0000991,GO:0001073,GO:0001178,GO:0001672,GO:0002831,GO:0002833,GO:0003674,GO:0003682,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0005737,GO:0005739,GO:0006139,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006996,GO:0007049,GO:0007154,GO:0007584,GO:0008023,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009267,GO:0009299,GO:0009605,GO:0009607,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010847,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016584,GO:0016973,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022607,GO:0030447,GO:0030466,GO:0030702,GO:0031056,GO:0031057,GO:0031058,GO:0031060,GO:0031062,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031401,GO:0031440,GO:0031445,GO:0031454,GO:0031491,GO:0031497,GO:0031503,GO:0031554,GO:0031564,GO:0031618,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032268,GO:0032269,GO:0032270,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0033554,GO:0034243,GO:0034502,GO:0034613,GO:0034622,GO:0034629,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0035065,GO:0035067,GO:0035327,GO:0036170,GO:0036180,GO:0040007,GO:0040008,GO:0040029,GO:0042221,GO:0042393,GO:0042594,GO:0042789,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043244,GO:0043254,GO:0043618,GO:0043620,GO:0043933,GO:0043954,GO:0044085,GO:0044087,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044382,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0044877,GO:0045013,GO:0045014,GO:0045184,GO:0045814,GO:0045892,GO:0045893,GO:0045927,GO:0045934,GO:0045935,GO:0045944,GO:0045990,GO:0046015,GO:0046483,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050657,GO:0050658,GO:0050684,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051128,GO:0051129,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051569,GO:0051570,GO:0051574,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060260,GO:0060303,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070827,GO:0070887,GO:0071103,GO:0071166,GO:0071168,GO:0071426,GO:0071427,GO:0071440,GO:0071441,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0071931,GO:0080090,GO:0080134,GO:0090033,GO:0090304,GO:0097355,GO:0097659,GO:0098687,GO:0140110,GO:1900049,GO:1900050,GO:1900109,GO:1900111,GO:1900112,GO:1900114,GO:1900428,GO:1900430,GO:1900434,GO:1900436,GO:1900443,GO:1900445,GO:1901360,GO:1901362,GO:1901576,GO:1901983,GO:1901984,GO:1902275,GO:1902679,GO:1902680,GO:1903047,GO:1903311,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1905269,GO:2000112,GO:2000113,GO:2000142,GO:2000756,GO:2000757,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.obsolete transcription factor activity, core RNA polymerase II binding
EggNOG OGsCOG2183@1,KOG1856@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021,ko03036
Exons5
Model size665
Cds size663
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9029.20936.1prot_M-pyrifera_M_contig9029.20936.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9029 6842..10486 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816814.8011255-CDS-M-pyrifera_M_contig9029:6841..69701622816814.8011255-CDS-M-pyrifera_M_contig9029:6841..6970Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 6842..6970 +
1692278194.4963791-CDS-M-pyrifera_M_contig9029:6841..69701692278194.4963791-CDS-M-pyrifera_M_contig9029:6841..6970Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 6842..6970 +
1622816814.817489-CDS-M-pyrifera_M_contig9029:7888..79991622816814.817489-CDS-M-pyrifera_M_contig9029:7888..7999Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 7889..7999 +
1692278194.509832-CDS-M-pyrifera_M_contig9029:7888..79991692278194.509832-CDS-M-pyrifera_M_contig9029:7888..7999Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 7889..7999 +
1622816814.8293328-CDS-M-pyrifera_M_contig9029:8732..88731622816814.8293328-CDS-M-pyrifera_M_contig9029:8732..8873Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 8733..8873 +
1692278194.5198722-CDS-M-pyrifera_M_contig9029:8732..88731692278194.5198722-CDS-M-pyrifera_M_contig9029:8732..8873Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 8733..8873 +
1622816814.842107-CDS-M-pyrifera_M_contig9029:9654..97911622816814.842107-CDS-M-pyrifera_M_contig9029:9654..9791Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 9655..9791 +
1692278194.531444-CDS-M-pyrifera_M_contig9029:9654..97911692278194.531444-CDS-M-pyrifera_M_contig9029:9654..9791Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 9655..9791 +
1622816814.85219-CDS-M-pyrifera_M_contig9029:10341..104861622816814.85219-CDS-M-pyrifera_M_contig9029:10341..10486Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 10342..10486 +
1692278194.5424228-CDS-M-pyrifera_M_contig9029:10341..104861692278194.5424228-CDS-M-pyrifera_M_contig9029:10341..10486Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9029 10342..10486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9029.20936.1

>prot_M-pyrifera_M_contig9029.20936.1 ID=prot_M-pyrifera_M_contig9029.20936.1|Name=mRNA_M-pyrifera_M_contig9029.20936.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=221bp
GGGRGGGKGDSSAARAGVRHPRSIMHPQFKNLTHLEAEQYLKETSDSRGE
ALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEE
YEDLDEIISRRVSACNDLVNDLLATPKYIGGTTGDVEKLLLEQKEQSPNR
IPYMMCKKGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELF
KWFKLNAQQLGRSSRTGRKV*
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mRNA from alignment at M-pyrifera_M_contig9029:6842..10486+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9029.20936.1 ID=mRNA_M-pyrifera_M_contig9029.20936.1|Name=mRNA_M-pyrifera_M_contig9029.20936.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3645bp|location=Sequence derived from alignment at M-pyrifera_M_contig9029:6842..10486+ (Macrocystis pyrifera P11B4 male)
GGGGGGGGGAGAGGAGGAGGCAAGGGGGACTCCTCGGCGGCCCGAGCTGG CGTACGGCACCCCCGCAGCATCATGCACCCTCAGTTCAAGAACTTGACCC ACCTCGAAGCCGAGCAGTACCTGAAGGAGGTGAGGGTTGCGACCGCCGTG CCATGTGTCGCGAGTAGAATGGGGCGGGAGGTGTACTCATGCCGTGTATG GCCGTAATCCTATGACCGTAGACCCTCGCATCCCTACAATAACCGCACGG GGCGCGGGGGGAGGGTGTACTCATTTCATGCATGGTATTAATAGTCGCGT GACCATAGGCCCTCGCATCCCTGCAATGCCGGGACGGAGCGGGGGGGGAG TGCACATGTCATGCATGGCCGTAGTCGTATTACCATAAGCCCTCGCATCC CTACAATGCCGGGACGGAGCGGGACGGAGCGGGGGGGTACTCATGTTATA CATGGCCGTAGTCGTATGACCATAGGCTCTCGCACCCGTACAATGCGGGG ACGGAGCGCGTCGGGTTTTCACTGACCAGGCAGACATTGGGGGGCGAGGG AGGGGGGGGAGAGGCGTTACTCATTCACTGTTTGCCTTACGAGTACGAAG GCAGTTGTGTGGCCATTGACCACGCATCCCTTTCGAGACGGAGCACCTTT TCTGCTCCTGTTACAAACACCTCCAACATTTCGGCGGTCATTGCGTTCTC CCTTTGTGTGGGGCGGGGGGAGGGGGAGGTGTTGTCAGTCCAACATGTTC GTGTCCTGCAACCGTGTGGCCGGAAGTTCGAGATTCTGTTTCAGAAGCAT ATGCGGTTTTAGTGCATGTGCGTTGCGAAGTTCTGGGAGAAGGGAGAGCG CAATGCAAGATGAGTTGCAGCCGACCGTCTCTTCTCATGTCCTACCCAAC CTTATGTTTTGTTTTGGGCAACGACCGTATCCTATCATCTCACCTCCCCT TTTTGTTTGTGCGTGTGTGCTATTTTTGTGTTTTTTGTGTGTTTTTTTTT GTGTGTTTTTTTTGTGTGTTTGTTTTCGGTGTTATGTCTTTTGCCAGACG AGCGACAGCCGAGGGGAAGCGTTGATCCGCCCCTCGAGCAAGGGTCCGGA CCATCTCTCGTTGACGTGGATGTGGATCGAAGGGGAGTTCATGCACACGG ACATACAGGTGCGGTCGCTTCTACTCGTGCAGTACGCAAGCCGAGTGAGT TCCCACGTTGCTCCCGAGTGCGTGGAAAATATATGTACCTGCCGTTGTTT GTGTTGTTCTTTTGGAGCCCTCGAGGCTACCTTCAGACGGTTTCTCAAGG ATGCGTCTGTTGCGGCAGGGTTTCGATCCTGCAAGTGTTGTCTGTGTCGC CAAACTAGCGGGTGACTCGTCGAGTACGGACGATAACGTTTCTCTTCATG AGATGAGGCACCTCAGAAGTTCGACACAAGTACGTGTCGTGTGCGGTCTC GCTTACATGGCAGCGTGTACATGCACGATTCGACGCGAGTGCGCGAGGGA AAAGCATGCTGAAGTCTTCTCTAGACAAGATAAAATAATGAAGACATACA CCACAGTGGGGGGGGGGGTGCCTGCTATGTGATCATAATATGTCTGAGTT ACGAAGGCGAGGGAGCTGAAGGAGTAGGGCGAAGATAGAAGATGAGATGG AAATCATTTTTTTCTATCGCTCACTCCCGAAACACAAGCAATCTTTACAT ACCATGGTAGTATTATTCCATGTAAACTATCCTTATATGTTGACCTACAG AGTGGTATTTCGAAGTATACGTCGTACTGTATATATACGATATATATATT TTTAAGCTTTTCGCCTGAAGAGAAGATGGAACGCTTTTTCTTACCACCTC CGTCCAATCCGCGATACCTGTTGCACGCCATCGATCCGCAGGAAATCGGC AAGCAGCGCGGGAGCATGCTCGCGCCGCGCCTCAAGATCGGAGGGGAAGA GTACGAAGACTTGGACGAGATTATCTCGAGGAGGGTGTCTGCGTGCAACG ACTTGGTGAACGACCTGCTCGCCACCCCAAAGGTAACTAACTGCCTGCAT GGGTCGCAGGGACGGGTCGTGAAAAGGGGCTTTCAGGAGGAAGGGGAGGA GGAGGAGGTGGAGGGGGAGGAGGAGGAGGAAAAGAGATAGTATTCTCAGC GTCGTAAAATACATTGTCGCCGTTTTTGTTTCCTGGATGCCCCTCGGTAG GTTTGATCGGGGTGAACACCCCGGATGTGGTATATTTTTTCGCGGTTTAC CGTGTTTTTTTTAAATTGTTTCCGCCACAGTCGTTGCCGCCCAAGAAATA GTTGCCGTGTACCGGCGAAAAGTTACCGGGAGTTTGCGTTCTTCCCGGGA AGAGAATGCCAGGGACTGTTTTTGTCGACGTCTCTTTTGCGGCTGGTTTC CAGTGCGCGGTTGTCTCGTGTACACGCCGCACCCGCGGACGAATGAAAGG GCGCAGAAATGTTCCATCGGTTGGGAATAATCCGAAGGTCGAGTGATTGA GTGTGCGTGGCCTGGCCTGGCCTGGCCTGGCCGTCCGATGGAAAACAGGG GTGCACCCGGAGGCTGTGGGTGTTGCCCCGTGCGCTGTGCGGTAGCAGCA GGGCTGTCGTATACCCCAGCATCAGGTGAGGATGTCCTTCCTTCCCGGAA AAAAGATAGCATGGCTTTGGTGGACAATCCTGGCGTGCTGCACGGTACGT GTATAGCTCGCCTGTGCTGCGTCCTGACAGCTGGTTGTGCTGCTGCTACA GTACAGCAGTACGTCGTGTTGTTTGACCTCGGTCGTCGCGCTTTGTTTCG GCTACTACGACAGTACATCGGGGGCACGACGGGGGACGTGGAGAAGCTGC TGCTGGAGCAGAAGGAGCAGTCACCGAACCGCATCCCGTACATGATGTGC AAGAAGGGCCCACCAGGGTTCATCAACCTCATGTATCTTCCTGGCAGAAC GTGAGTCATGGGTCTGGTTCGCACGAGCACAACGTAGGCCTACACGTATC GCCTAGAGCTGTTTTTTCGTTTTAACCCCCTATTGGTCGCTCCCTCATTT TTACAGGAAACCTCGTTGGAATTATTGTATAATAGGACATTTATTTGTAG TATTACGGGGGTCCATACTAAATAGGACCAAATATTCTCAGTAAAAATAG GTAAATGTGTAGGTTTTAGTGTATACCATAGGTCCTATTAACTATGGACC CCTGTAGTAATAGTAGAAGGTTGAAGGTATTCATGGACATTTCTAAGGAA CCGGTGCCGTGTATTGCTTCATGCCTGATGGAGTGCGTGTGTGCTGAGCG TCTTCGTCGGCGCCTTGCTCGATTCGCTTTGATGCAGAGTCTGCACACCA TGTGTGTTGTTGGTTCTGGACCCTGCAGCTCTGCCGTTCTGTTGGTCGCC ATCGATATGGTCGGCGAGGCTCTCGAGGTGCCGACGTTTGACCCTTGCTG TACGTTTCCCTTTGTTGTTTTGTTGCGGTGACCCGTGGCGTGACCCACAG CGTTAGGAAGACTGTGGTGGAGATTACGCCAGAGGGATACCTCATGTCTA AGCGGTGCTTCAAGACGCTTCCTGAACTGTTCAAATGGTTCAAGCTTAAC GCGCAGCAGCTCGGCAGGAGCAGCCGGACTGGACGGAAGGTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9029:6842..10486+

>mRNA_M-pyrifera_M_contig9029.20936.1 ID=mRNA_M-pyrifera_M_contig9029.20936.1|Name=mRNA_M-pyrifera_M_contig9029.20936.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1326bp|location=Sequence derived from alignment at M-pyrifera_M_contig9029:6842..10486+ (Macrocystis pyrifera P11B4 male)
GGGGGGGGGAGAGGAGGAGGCAAGGGGGACTCCTCGGCGGCCCGAGCTGG
CGTACGGCACCCCCGCAGCATCATGCACCCTCAGTTCAAGAACTTGACCC
ACCTCGAAGCCGAGCAGTACCTGAAGGAGGGGGGGGGGAGAGGAGGAGGC
AAGGGGGACTCCTCGGCGGCCCGAGCTGGCGTACGGCACCCCCGCAGCAT
CATGCACCCTCAGTTCAAGAACTTGACCCACCTCGAAGCCGAGCAGTACC
TGAAGGAGACGAGCGACAGCCGAGGGGAAGCGTTGATCCGCCCCTCGAGC
AAGGGTCCGGACCATCTCTCGTTGACGTGGATGTGGATCGAAGGGGAGTT
CATGCACACGGACATACAGACGAGCGACAGCCGAGGGGAAGCGTTGATCC
GCCCCTCGAGCAAGGGTCCGGACCATCTCTCGTTGACGTGGATGTGGATC
GAAGGGGAGTTCATGCACACGGACATACAGGAAATCGGCAAGCAGCGCGG
GAGCATGCTCGCGCCGCGCCTCAAGATCGGAGGGGAAGAGTACGAAGACT
TGGACGAGATTATCTCGAGGAGGGTGTCTGCGTGCAACGACTTGGTGAAC
GACCTGCTCGCCACCCCAAAGGAAATCGGCAAGCAGCGCGGGAGCATGCT
CGCGCCGCGCCTCAAGATCGGAGGGGAAGAGTACGAAGACTTGGACGAGA
TTATCTCGAGGAGGGTGTCTGCGTGCAACGACTTGGTGAACGACCTGCTC
GCCACCCCAAAGTACATCGGGGGCACGACGGGGGACGTGGAGAAGCTGCT
GCTGGAGCAGAAGGAGCAGTCACCGAACCGCATCCCGTACATGATGTGCA
AGAAGGGCCCACCAGGGTTCATCAACCTCATGTATCTTCCTGGCAGAACT
ACATCGGGGGCACGACGGGGGACGTGGAGAAGCTGCTGCTGGAGCAGAAG
GAGCAGTCACCGAACCGCATCCCGTACATGATGTGCAAGAAGGGCCCACC
AGGGTTCATCAACCTCATGTATCTTCCTGGCAGAACCGTTAGGAAGACTG
TGGTGGAGATTACGCCAGAGGGATACCTCATGTCTAAGCGGTGCTTCAAG
ACGCTTCCTGAACTGTTCAAATGGTTCAAGCTTAACGCGCAGCAGCTCGG
CAGGAGCAGCCGGACTGGACGGAAGGTGTGACGTTAGGAAGACTGTGGTG
GAGATTACGCCAGAGGGATACCTCATGTCTAAGCGGTGCTTCAAGACGCT
TCCTGAACTGTTCAAATGGTTCAAGCTTAACGCGCAGCAGCTCGGCAGGA
GCAGCCGGACTGGACGGAAGGTGTGA
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