mRNA_M-pyrifera_M_contig90214.20919.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90214.20919.1
Unique NamemRNA_M-pyrifera_M_contig90214.20919.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90214.20919.1 vs. uniprot
Match: UPI001B001D9E (Uncharacterized protein n=1 Tax=Streptosporangiaceae bacterium NEAU-GS5 TaxID=2820291 RepID=UPI001B001D9E)

HSP 1 Score: 81.6 bits (200), Expect = 1.370e-15
Identity = 52/139 (37.41%), Postives = 73/139 (52.52%), Query Frame = 1 
Query:    1 AQDPVAYRVSTVDVASGEVLETLGPRKLPLVEE--MTGEARQQVWSPRGDQLYTLYIRQYHQHPGVDEPTVPHVHADAVDAFVHVLDVSADWALCVELPSGFGLGPSGTTAIMVD-------DTGTEITVVDHALAMKV 390
            A DP AYRV  +D+A+G+V   +   K+P+ EE  M GE R  V +P G +LYTLY    HQ   +    +       V AFVHVLD+   WA C++LP  FG GP+    +  D       D G+   VV H+  +++
Sbjct:  163 ADDPQAYRVRALDLATGKVGPIMSRDKVPVAEEETMRGEGRVAVLAPGGGRLYTLYT---HQPNHLHSRDLVAGRKTGVHAFVHVLDLEQQWAYCLDLPEPFGQGPAEGHTLATDGARLYVFDAGSGRLVVAHSDTLEI 298
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BLAST of mRNA_M-pyrifera_M_contig90214.20919.1 vs. uniprot
Match: A0A7W0ZEP3_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0ZEP3_9ACTN)

HSP 1 Score: 73.6 bits (179), Expect = 1.120e-12
Identity = 46/126 (36.51%), Postives = 63/126 (50.00%), Query Frame = 1 
Query:    1 AQDPVAYRVSTVDVASGEVLETLGPRKLPLVEEMTGEARQQVWSPRGDQLYTLYIRQ---YHQHPGVDEPTVPHVHADAVDAFVHVLDVSADWALCVELPSGFGLGPSGTTAIMVDDTGTEITVVD 369
            A +P  Y +  +D+ SG V + + P K    E M G  R Q++SP GD+LYTLY +Q   Y    G  E      HA     FVH+L++   W  C++LP  FG G   T A+ V   G  + V D
Sbjct:  188 AMNPTHYELRRLDLQSGSVRD-IDPPKQNAPERMRGTGRVQIFSPSGDELYTLYTQQGPNYEHGDGSIEHEPGQTHA-----FVHLLNLDGAWTHCIDLPMPFGTGSVTTHALAVSPDGERLYVAD 307
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90214.20919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001B001D9E1.370e-1537.41Uncharacterized protein n=1 Tax=Streptosporangiace... [more]
A0A7W0ZEP3_9ACTN1.120e-1236.51Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90214contigM-pyrifera_M_contig90214:399..794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score83.2
Seed ortholog evalue1e-13
Seed eggNOG ortholog1122182.KB903837_gene3640
Hectar predicted targeting categoryother localisation
EggNOG free text desc.amine dehydrogenase activity
EggNOG OGs2IC6X@201174,4DC6J@85008,COG3391@1,COG3391@2
COG Functional cat.S
Best tax levelMicromonosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816813.9456184-CDS-M-pyrifera_M_contig90214:398..7941622816813.9456184-CDS-M-pyrifera_M_contig90214:398..794Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90214 399..794 -
1692278193.964728-CDS-M-pyrifera_M_contig90214:398..7941692278193.964728-CDS-M-pyrifera_M_contig90214:398..794Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90214 399..794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90214.20919.1prot_M-pyrifera_M_contig90214.20919.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90214 399..794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90214.20919.1

>prot_M-pyrifera_M_contig90214.20919.1 ID=prot_M-pyrifera_M_contig90214.20919.1|Name=mRNA_M-pyrifera_M_contig90214.20919.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
AQDPVAYRVSTVDVASGEVLETLGPRKLPLVEEMTGEARQQVWSPRGDQL
YTLYIRQYHQHPGVDEPTVPHVHADAVDAFVHVLDVSADWALCVELPSGF
GLGPSGTTAIMVDDTGTEITVVDHALAMKVVV
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mRNA from alignment at M-pyrifera_M_contig90214:399..794-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90214.20919.1 ID=mRNA_M-pyrifera_M_contig90214.20919.1|Name=mRNA_M-pyrifera_M_contig90214.20919.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig90214:399..794- (Macrocystis pyrifera P11B4 male)
GCACAGGATCCCGTGGCGTATCGCGTCAGCACCGTCGACGTCGCGAGCGG
CGAGGTGCTCGAGACACTCGGCCCCCGGAAGCTCCCCCTGGTCGAGGAGA
TGACCGGCGAGGCGCGCCAGCAGGTCTGGTCACCTCGGGGCGACCAGCTG
TACACGCTCTACATCCGTCAGTACCACCAGCATCCGGGTGTCGATGAGCC
GACGGTGCCGCACGTCCACGCCGACGCGGTCGACGCGTTCGTCCACGTCC
TCGATGTCTCGGCCGACTGGGCCCTGTGCGTCGAACTCCCGTCCGGTTTC
GGGCTCGGACCGTCGGGCACGACCGCGATCATGGTGGACGATACCGGGAC
GGAGATCACCGTGGTCGATCATGCACTCGCCATGAAGGTCGTGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90214:399..794-

>mRNA_M-pyrifera_M_contig90214.20919.1 ID=mRNA_M-pyrifera_M_contig90214.20919.1|Name=mRNA_M-pyrifera_M_contig90214.20919.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig90214:399..794- (Macrocystis pyrifera P11B4 male)
GCACAGGATCCCGTGGCGTATCGCGTCAGCACCGTCGACGTCGCGAGCGG
CGAGGTGCTCGAGACACTCGGCCCCCGGAAGCTCCCCCTGGTCGAGGAGA
TGACCGGCGAGGCGCGCCAGCAGGTCTGGTCACCTCGGGGCGACCAGCTG
TACACGCTCTACATCCGTCAGTACCACCAGCATCCGGGTGTCGATGAGCC
GACGGTGCCGCACGTCCACGCCGACGCGGTCGACGCGTTCGTCCACGTCC
TCGATGTCTCGGCCGACTGGGCCCTGTGCGTCGAACTCCCGTCCGGTTTC
GGGCTCGGACCGTCGGGCACGACCGCGATCATGGTGGACGATACCGGGAC
GGAGATCACCGTGGTCGATCATGCACTCGCCATGAAGGTCGTGGTGGCAC
AGGATCCCGTGGCGTATCGCGTCAGCACCGTCGACGTCGCGAGCGGCGAG
GTGCTCGAGACACTCGGCCCCCGGAAGCTCCCCCTGGTCGAGGAGATGAC
CGGCGAGGCGCGCCAGCAGGTCTGGTCACCTCGGGGCGACCAGCTGTACA
CGCTCTACATCCGTCAGTACCACCAGCATCCGGGTGTCGATGAGCCGACG
GTGCCGCACGTCCACGCCGACGCGGTCGACGCGTTCGTCCACGTCCTCGA
TGTCTCGGCCGACTGGGCCCTGTGCGTCGAACTCCCGTCCGGTTTCGGGC
TCGGACCGTCGGGCACGACCGCGATCATGGTGGACGATACCGGGACGGAG
ATCACCGTGGTCGATCATGCACTCGCCATGAAGGTCGTGGTG
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