mRNA_M-pyrifera_M_contig90197.20907.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90197.20907.1
Unique NamemRNA_M-pyrifera_M_contig90197.20907.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90197.20907.1 vs. uniprot
Match: UPI001E1DFF54 (uncharacterized protein LOC123556827 isoform X1 n=3 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DFF54)

HSP 1 Score: 59.7 bits (143), Expect = 1.520e-7
Identity = 46/167 (27.54%), Postives = 81/167 (48.50%), Query Frame = 1 
Query:    7 RSEWHAKAIRKYLEGTNLLFSQLPFAAREILVEAASHEVFRPGEVVVRQKERVTESSRFYIILSGRVGVFV--KESDGGDGXXXXXGGDVKDVV-----------------GKLVAVLDPGAAVGEKAMLEHAGVRTATLLAQEHTDMVAVVRDDFLRAMAISVAQQ 450
            R ++  + +  +L   + +FS L     + +V   S   FR  +++++Q E       FYIIL+G++ +++  K+ DGG G     G D K  +                 G  V  L  G   GE A++ +  VRTAT++A+E TD++ V R  + RA+   +A++
Sbjct:   19 RQDFEIQGLLPWLRKKSKIFSTLKTDYLKDIVRNCSLGKFRKDDIIIKQGEI---GDCFYIILAGKISIYILNKDKDGGSG-----GSDEKSAISSIGTLNKDGELDRSKLGNFVTSLGSGFPFGEVALVSNDAVRTATIVAEEETDLLVVDRALYNRAVRDVLAEE 177
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BLAST of mRNA_M-pyrifera_M_contig90197.20907.1 vs. uniprot
Match: K1Q5I1_CRAGI (cAMP-dependent protein kinase regulatory subunit n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1Q5I1_CRAGI)

HSP 1 Score: 57.0 bits (136), Expect = 1.290e-6
Identity = 42/160 (26.25%), Postives = 80/160 (50.00%), Query Frame = 1 
Query:    1 AMRSEWHAKAIRKYLEGTNLLFSQLPFAAREILVEAASHEVFRPGEVVVRQKERVTESSRFYIILSGRVGVFV--KESDGGD--------GXXXXXGGDVKDVVGKLVAVLDPGAAVGEKAMLEHAGVRTATLLAQEHTDMVAVVRDDFLRAMAISVAQQ 450
            A R ++  + +  +L   + LFSQL     + ++       F   +++++Q +   +   FY+IL G++ ++V  K+S+ GD        G     G   +  +G  V  L  G   G+ A++    VRTAT++A+E TD++ V R  + RA+   +A++
Sbjct:   17 AFRQDFEIQTLMPWLRKQSQLFSQLRTEYLKDIIRNCGQVTFNKDDIIIKQGD---QGDCFYMILGGKISIYVLNKKSEEGDETVPLEQIGTLNEKGQLDRSKLGIFVTHLGTGVPFGDVALMSEDCVRTATIIAEEVTDLLVVDRALYNRAVKEVLAKE 173
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BLAST of mRNA_M-pyrifera_M_contig90197.20907.1 vs. uniprot
Match: A0A7I8VJR4_9ANNE (DgyrCDS5387 n=2 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VJR4_9ANNE)

HSP 1 Score: 55.1 bits (131), Expect = 5.480e-6
Identity = 40/142 (28.17%), Postives = 72/142 (50.70%), Query Frame = 1 
Query:    7 RSEWHAKAIRKYLEGTNLLFSQLPFAAREILVEAASHEVFRPGEVVVRQKERVTESSRFYIILSGRVGVFVKESDGGDGXXXXXGGDVKDVVGKLVAVLDPGAAVGEKAMLEHAGVRTATLLAQEHTDMVAVVRDDFLRAMA 432
            R+E   +A++ +    + L  ++       L++  +H + R  EVV+ Q E+      FYIIL G+V ++ KES   +G         +   G  +  L  G A GE A++    +RTA+++A E TD++ + R  + R++A
Sbjct:   19 RTEAEIQALQPWFTKKSQLLQKIKTDILSDLIKNCNHAIKRKDEVVILQGEK---GHCFYIILRGQVSIYNKESTE-EGQSTTDRESDRSKFGNFLVNLHDGNAFGEIALINPDCIRTASVIADETTDLIVIDRQLYNRSVA 156
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90197.20907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI001E1DFF541.520e-727.54uncharacterized protein LOC123556827 isoform X1 n=... [more]
K1Q5I1_CRAGI1.290e-626.25cAMP-dependent protein kinase regulatory subunit n... [more]
A0A7I8VJR4_9ANNE5.480e-628.17DgyrCDS5387 n=2 Tax=Dimorphilus gyrociliatus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90197contigM-pyrifera_M_contig90197:311..760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.1
Seed ortholog evalue1e-06
Seed eggNOG ortholog7668.SPU_002007-tr
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cyclic nucleotide-monophosphate binding domain
EggNOG OGs3A5VN@33154,3BSK8@33208,3D9Q2@33213,COG0664@1,KOG1113@2759
COG Functional cat.T
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size450
Cds size447
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816813.2202787-UTR-M-pyrifera_M_contig90197:310..3131622816813.2202787-UTR-M-pyrifera_M_contig90197:310..313Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90197 311..313 +
1692278193.5096285-UTR-M-pyrifera_M_contig90197:310..3131692278193.5096285-UTR-M-pyrifera_M_contig90197:310..313Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90197 311..313 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816813.2348773-CDS-M-pyrifera_M_contig90197:313..7601622816813.2348773-CDS-M-pyrifera_M_contig90197:313..760Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90197 314..760 +
1692278193.5224762-CDS-M-pyrifera_M_contig90197:313..7601692278193.5224762-CDS-M-pyrifera_M_contig90197:313..760Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90197 314..760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90197.20907.1prot_M-pyrifera_M_contig90197.20907.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90197 314..760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90197.20907.1

>prot_M-pyrifera_M_contig90197.20907.1 ID=prot_M-pyrifera_M_contig90197.20907.1|Name=mRNA_M-pyrifera_M_contig90197.20907.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
MRSEWHAKAIRKYLEGTNLLFSQLPFAAREILVEAASHEVFRPGEVVVRQ
KERVTESSRFYIILSGRVGVFVKESDGGDGGSEGSGGDVKDVVGKLVAVL
DPGAAVGEKAMLEHAGVRTATLLAQEHTDMVAVVRDDFLRAMAISVAQQ
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mRNA from alignment at M-pyrifera_M_contig90197:311..760+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90197.20907.1 ID=mRNA_M-pyrifera_M_contig90197.20907.1|Name=mRNA_M-pyrifera_M_contig90197.20907.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig90197:311..760+ (Macrocystis pyrifera P11B4 male)
GCGATGCGATCAGAGTGGCATGCGAAGGCGATTCGGAAGTACTTGGAAGG
AACTAACCTTCTTTTCTCACAGCTTCCTTTTGCTGCAAGGGAGATTTTGG
TGGAGGCGGCGTCGCATGAGGTATTTCGACCTGGAGAAGTTGTAGTGAGG
CAGAAGGAGCGCGTGACGGAAAGCTCGAGGTTCTATATCATTTTGTCGGG
TCGCGTTGGGGTGTTTGTGAAAGAATCAGATGGCGGGGATGGAGGGAGCG
AGGGGAGTGGGGGAGATGTGAAGGATGTGGTGGGGAAATTGGTAGCAGTG
TTGGATCCAGGGGCTGCAGTTGGGGAGAAAGCAATGTTGGAACACGCTGG
GGTGAGAACTGCAACACTCTTGGCCCAAGAGCATACAGATATGGTGGCAG
TGGTACGTGATGATTTCTTGCGTGCTATGGCAATATCCGTTGCACAACAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90197:311..760+

>mRNA_M-pyrifera_M_contig90197.20907.1 ID=mRNA_M-pyrifera_M_contig90197.20907.1|Name=mRNA_M-pyrifera_M_contig90197.20907.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig90197:311..760+ (Macrocystis pyrifera P11B4 male)
ATGCGATCAGAGTGGCATGCGAAGGCGATTCGGAAGTACTTGGAAGGAAC
TAACCTTCTTTTCTCACAGCTTCCTTTTGCTGCAAGGGAGATTTTGGTGG
AGGCGGCGTCGCATGAGGTATTTCGACCTGGAGAAGTTGTAGTGAGGCAG
AAGGAGCGCGTGACGGAAAGCTCGAGGTTCTATATCATTTTGTCGGGTCG
CGTTGGGGTGTTTGTGAAAGAATCAGATGGCGGGGATGGAGGGAGCGAGG
GGAGTGGGGGAGATGTGAAGGATGTGGTGGGGAAATTGGTAGCAGTGTTG
GATCCAGGGGCTGCAGTTGGGGAGAAAGCAATGTTGGAACACGCTGGGGT
GAGAACTGCAACACTCTTGGCCCAAGAGCATACAGATATGGTGGCAGTGG
TACGTGATGATTTCTTGCGTGCTATGGCAATATCCGTTGCACAACAGATG
CGATCAGAGTGGCATGCGAAGGCGATTCGGAAGTACTTGGAAGGAACTAA
CCTTCTTTTCTCACAGCTTCCTTTTGCTGCAAGGGAGATTTTGGTGGAGG
CGGCGTCGCATGAGGTATTTCGACCTGGAGAAGTTGTAGTGAGGCAGAAG
GAGCGCGTGACGGAAAGCTCGAGGTTCTATATCATTTTGTCGGGTCGCGT
TGGGGTGTTTGTGAAAGAATCAGATGGCGGGGATGGAGGGAGCGAGGGGA
GTGGGGGAGATGTGAAGGATGTGGTGGGGAAATTGGTAGCAGTGTTGGAT
CCAGGGGCTGCAGTTGGGGAGAAAGCAATGTTGGAACACGCTGGGGTGAG
AACTGCAACACTCTTGGCCCAAGAGCATACAGATATGGTGGCAGTGGTAC
GTGATGATTTCTTGCGTGCTATGGCAATATCCGTTGCACAACAG
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