mRNA_M-pyrifera_M_contig90115.20887.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90115.20887.1
Unique NamemRNA_M-pyrifera_M_contig90115.20887.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90115.20887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90115contigM-pyrifera_M_contig90115:51..509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size456
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.4571433-CDS-M-pyrifera_M_contig90115:50..5061622816812.4571433-CDS-M-pyrifera_M_contig90115:50..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90115 51..506 -
1692278193.166317-CDS-M-pyrifera_M_contig90115:50..5061692278193.166317-CDS-M-pyrifera_M_contig90115:50..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90115 51..506 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.4686773-UTR-M-pyrifera_M_contig90115:506..5091622816812.4686773-UTR-M-pyrifera_M_contig90115:506..509Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90115 507..509 -
1692278193.1798873-UTR-M-pyrifera_M_contig90115:506..5091692278193.1798873-UTR-M-pyrifera_M_contig90115:506..509Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90115 507..509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90115.20887.1prot_M-pyrifera_M_contig90115.20887.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90115 51..506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90115.20887.1

>prot_M-pyrifera_M_contig90115.20887.1 ID=prot_M-pyrifera_M_contig90115.20887.1|Name=mRNA_M-pyrifera_M_contig90115.20887.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
MVPRLEALVQEELGAQRQILEHLTAQETALLAADGDAVDALLVEARSLMA
GATARDTRRRMLLKDFERLWGVSAKSLTLGSIAARLEGSGRRLKRLRTEL
SDVLRETARTSTRVRTYARFQQGIIRETVERVIESGGGRPSEGGTLVNAE
A*
back to top

mRNA from alignment at M-pyrifera_M_contig90115:51..509-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90115.20887.1 ID=mRNA_M-pyrifera_M_contig90115.20887.1|Name=mRNA_M-pyrifera_M_contig90115.20887.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig90115:51..509- (Macrocystis pyrifera P11B4 male)
GCCATGGTCCCGCGCCTCGAAGCGCTCGTGCAGGAGGAGCTCGGCGCCCA
GCGCCAGATCCTCGAGCACCTGACCGCCCAGGAGACCGCGCTGCTCGCGG
CCGACGGCGACGCGGTCGACGCCCTGCTCGTCGAGGCGCGCAGCCTGATG
GCCGGCGCCACCGCGCGCGACACGCGCCGGCGGATGTTGCTGAAGGACTT
CGAACGCCTGTGGGGCGTCAGCGCCAAGAGCCTGACCCTGGGCAGCATCG
CGGCGCGCCTCGAAGGCTCCGGCCGGCGCCTCAAGCGCCTGCGCACCGAG
CTCTCGGACGTGCTCCGCGAGACCGCCCGCACCAGCACCCGCGTGCGCAC
CTACGCCCGCTTCCAGCAGGGCATCATCCGCGAGACCGTCGAGCGCGTCA
TCGAGTCCGGTGGCGGTCGCCCGTCCGAAGGCGGCACCCTCGTCAACGCA
GAGGCCTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig90115:51..509-

>mRNA_M-pyrifera_M_contig90115.20887.1 ID=mRNA_M-pyrifera_M_contig90115.20887.1|Name=mRNA_M-pyrifera_M_contig90115.20887.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig90115:51..509- (Macrocystis pyrifera P11B4 male)
ATGGTCCCGCGCCTCGAAGCGCTCGTGCAGGAGGAGCTCGGCGCCCAGCG
CCAGATCCTCGAGCACCTGACCGCCCAGGAGACCGCGCTGCTCGCGGCCG
ACGGCGACGCGGTCGACGCCCTGCTCGTCGAGGCGCGCAGCCTGATGGCC
GGCGCCACCGCGCGCGACACGCGCCGGCGGATGTTGCTGAAGGACTTCGA
ACGCCTGTGGGGCGTCAGCGCCAAGAGCCTGACCCTGGGCAGCATCGCGG
CGCGCCTCGAAGGCTCCGGCCGGCGCCTCAAGCGCCTGCGCACCGAGCTC
TCGGACGTGCTCCGCGAGACCGCCCGCACCAGCACCCGCGTGCGCACCTA
CGCCCGCTTCCAGCAGGGCATCATCCGCGAGACCGTCGAGCGCGTCATCG
AGTCCGGTGGCGGTCGCCCGTCCGAAGGCGGCACCCTCGTCAACGCAGAG
GCCTAGATGGTCCCGCGCCTCGAAGCGCTCGTGCAGGAGGAGCTCGGCGC
CCAGCGCCAGATCCTCGAGCACCTGACCGCCCAGGAGACCGCGCTGCTCG
CGGCCGACGGCGACGCGGTCGACGCCCTGCTCGTCGAGGCGCGCAGCCTG
ATGGCCGGCGCCACCGCGCGCGACACGCGCCGGCGGATGTTGCTGAAGGA
CTTCGAACGCCTGTGGGGCGTCAGCGCCAAGAGCCTGACCCTGGGCAGCA
TCGCGGCGCGCCTCGAAGGCTCCGGCCGGCGCCTCAAGCGCCTGCGCACC
GAGCTCTCGGACGTGCTCCGCGAGACCGCCCGCACCAGCACCCGCGTGCG
CACCTACGCCCGCTTCCAGCAGGGCATCATCCGCGAGACCGTCGAGCGCG
TCATCGAGTCCGGTGGCGGTCGCCCGTCCGAAGGCGGCACCCTCGTCAAC
GCAGAGGCCTAG
back to top