mRNA_M-pyrifera_M_contig89780.20811.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89780.20811.1
Unique NamemRNA_M-pyrifera_M_contig89780.20811.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89780.20811.1 vs. uniprot
Match: A0A382Y8G8_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382Y8G8_9ZZZZ)

HSP 1 Score: 99.0 bits (245), Expect = 3.170e-25
Identity = 52/86 (60.47%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    1 PSAHRLQLGLPGYLIPFATLAFVPQRQKWPSDAPSPPVFLMISTHFTAPPSVPITPAILKPGGLKRNSTVEPWAFTSHLPSRLRTL 258
            PSAHRLQ GLPGYLI FAT AFVPQRQ WP   PSP +FL ISTHFTA P +P++   L P     +S V+P  F   L  RLRTL
Sbjct:    9 PSAHRLQRGLPGYLILFATHAFVPQRQYWPRKLPSPSMFLPISTHFTATPGIPLSSTKLYPDSSLTSSPVKPKDFNQCLSGRLRTL 94
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BLAST of mRNA_M-pyrifera_M_contig89780.20811.1 vs. uniprot
Match: A0A1J7I993_LUPAN (Uncharacterized protein n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1J7I993_LUPAN)

HSP 1 Score: 99.8 bits (247), Expect = 3.870e-25
Identity = 53/86 (61.63%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:    1 PSAHRLQLGLPGYLIPFATLAFVPQRQKWPSDAPSPPVFLMISTHFTAPPSVPITPAILKPGGLKRNSTVEPWAFTSHLPSRLRTL 258
            PS HRL+LGL GYLIPFA LAFV Q Q  PS   SP VF  ISTHFTAPP +P TP +L+ G   R S VEPW  T++L S L+TL
Sbjct:   23 PSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSTPTLLQLGSFHRLSRVEPWDLTANLKSHLQTL 108
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BLAST of mRNA_M-pyrifera_M_contig89780.20811.1 vs. uniprot
Match: A0A2E9WNQ5_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E9WNQ5_9PLAN)

HSP 1 Score: 96.3 bits (238), Expect = 1.310e-24
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 PSAHRLQLGLPGYLIPFATLAFVPQRQKWPSDAPSPPVFLMISTHFTAPPSVPITPAIL 177
            PSAHRL+LGLPGYLIPFATLAF PQRQ+  S+  SPPVFL ISTHFT PP VP+TP +L
Sbjct:    1 PSAHRLRLGLPGYLIPFATLAFAPQRQRQASEPLSPPVFLQISTHFTVPPGVPLTPPVL 59
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BLAST of mRNA_M-pyrifera_M_contig89780.20811.1 vs. uniprot
Match: A0A151S2A8_CAJCA (Uncharacterized protein (Fragment) n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S2A8_CAJCA)

HSP 1 Score: 98.2 bits (243), Expect = 5.710e-24
Identity = 52/86 (60.47%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 PSAHRLQLGLPGYLIPFATLAFVPQRQKWPSDAPSPPVFLMISTHFTAPPSVPITPAILKPGGLKRNSTVEPWAFTSHLPSRLRTL 258
            PS HRL+LGL GYLIPFA LAFV Q Q  PS   SP VF  ISTHFTAPP +P  P +L+ G   R S VEPW  T++L S L+TL
Sbjct:   72 PSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTANLKSHLQTL 157
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BLAST of mRNA_M-pyrifera_M_contig89780.20811.1 vs. uniprot
Match: A0A6D2LA75_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2LA75_9BRAS)

HSP 1 Score: 99.0 bits (245), Expect = 5.740e-24
Identity = 53/86 (61.63%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    1 PSAHRLQLGLPGYLIPFATLAFVPQRQKWPSDAPSPPVFLMISTHFTAPPSVPITPAILKPGGLKRNSTVEPWAFTSHLPSRLRTL 258
            PS HRL+LGL GYLIPFA LAFV Q Q  PS   SP VF  ISTHFTAPP +P  P +LK G   R S VEPW  T+ L S L+TL
Sbjct:   23 PSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLKLGSFHRLSRVEPWDLTADLKSHLQTL 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig89780.20811.1 vs. uniprot
Match: A0A6A5MV91_LUPAL (Uncharacterized protein n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6A5MV91_LUPAL)

HSP 1 Score: 97.8 bits (242), Expect = 7.130e-24
Identity = 52/86 (60.47%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 PSAHRLQLGLPGYLIPFATLAFVPQRQKWPSDAPSPPVFLMISTHFTAPPSVPITPAILKPGGLKRNSTVEPWAFTSHLPSRLRTL 258
            PS HRL+LGL GYLIPFA LAFV Q Q  PS   SP VF  ISTHFTAPP +P  P +L+ G   R S VEPW  T++L S L+TL
Sbjct:   67 PSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTLLQLGSFHRLSRVEPWDLTANLKSHLQTL 152
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BLAST of mRNA_M-pyrifera_M_contig89780.20811.1 vs. uniprot
Match: A0A6A5L520_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L520_LUPAL)

HSP 1 Score: 97.8 bits (242), Expect = 8.290e-24
Identity = 52/86 (60.47%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 PSAHRLQLGLPGYLIPFATLAFVPQRQKWPSDAPSPPVFLMISTHFTAPPSVPITPAILKPGGLKRNSTVEPWAFTSHLPSRLRTL 258
            PS HRL+LGL GYLIPFA LAFV Q Q  PS   SP VF  ISTHFTAPP +P  P +L+ G   R S VEPW  T++L S L+TL
Sbjct:   73 PSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTLLQLGSFHRLSRVEPWDLTANLKSHLQTL 158
[Close]
BLAST of mRNA_M-pyrifera_M_contig89780.20811.1 vs. uniprot
Match: A0A6D2JD36_9BRAS (AMP-binding domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JD36_9BRAS)

HSP 1 Score: 99.0 bits (245), Expect = 1.600e-23
Identity = 53/86 (61.63%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    1 PSAHRLQLGLPGYLIPFATLAFVPQRQKWPSDAPSPPVFLMISTHFTAPPSVPITPAILKPGGLKRNSTVEPWAFTSHLPSRLRTL 258
            PS HRL+LGL GYLIPFA LAFV Q Q  PS   SP VF  ISTHFTAPP +P  P +LK G   R S VEPW  T+ L S L+TL
Sbjct:   23 PSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLKLGSFHRLSRVEPWDLTADLKSHLQTL 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig89780.20811.1 vs. uniprot
Match: A7VSA3_9FIRM (Uncharacterized protein n=1 Tax=[Clostridium] leptum DSM 753 TaxID=428125 RepID=A7VSA3_9FIRM)

HSP 1 Score: 95.1 bits (235), Expect = 1.840e-23
Identity = 54/86 (62.79%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    1 PSAHRLQLGLPGYLIPFATLAFVPQRQKWPSDAPSPPVFLMISTHFTAPPSVPITPAILKPGGLKRNSTVEPWAFTSHLPSRLRTL 258
            PS HRL+ GLPGYLI FAT AFV QRQ  PS  PSP VFL ISTHFTA P +P T   LK    KR+  V+P  FT  LP RLRTL
Sbjct:   29 PSNHRLRHGLPGYLILFATHAFVLQRQLKPSRPPSPLVFLPISTHFTATPGIPPTSTSLKQDSFKRSLWVKPIDFTPDLPRRLRTL 114
[Close]
BLAST of mRNA_M-pyrifera_M_contig89780.20811.1 vs. uniprot
Match: A0A5A7VJP9_CUCME (Uncharacterized protein n=2 Tax=fabids TaxID=91835 RepID=A0A5A7VJP9_CUCME)

HSP 1 Score: 97.8 bits (242), Expect = 5.810e-23
Identity = 52/86 (60.47%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    1 PSAHRLQLGLPGYLIPFATLAFVPQRQKWPSDAPSPPVFLMISTHFTAPPSVPITPAILKPGGLKRNSTVEPWAFTSHLPSRLRTL 258
            PS HRL+LGL GYLIPFA LAFV Q Q  PS   SP VF  ISTHFTAPP +P  P +L+ G   R S VEPW  T+ L S L+TL
Sbjct:  163 PSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFSISTHFTAPPKIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTL 248
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89780.20811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A382Y8G8_9ZZZZ3.170e-2560.47Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A1J7I993_LUPAN3.870e-2561.63Uncharacterized protein n=4 Tax=Mesangiospermae Ta... [more]
A0A2E9WNQ5_9PLAN1.310e-2476.27Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A151S2A8_CAJCA5.710e-2460.47Uncharacterized protein (Fragment) n=2 Tax=Cajanus... [more]
A0A6D2LA75_9BRAS5.740e-2461.63Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A6A5MV91_LUPAL7.130e-2460.47Uncharacterized protein n=3 Tax=Mesangiospermae Ta... [more]
A0A6A5L520_LUPAL8.290e-2460.47Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6D2JD36_9BRAS1.600e-2361.63AMP-binding domain-containing protein n=1 Tax=Micr... [more]
A7VSA3_9FIRM1.840e-2362.79Uncharacterized protein n=1 Tax=[Clostridium] lept... [more]
A0A5A7VJP9_CUCME5.810e-2360.47Uncharacterized protein n=2 Tax=fabids TaxID=91835... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89780contigM-pyrifera_M_contig89780:49..309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue6.9e-19
Seed eggNOG ortholog4113.PGSC0003DMT400086496
Preferred namerps12
KEGG koko:K02950
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0048@1,KOG1750@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816808.713755-CDS-M-pyrifera_M_contig89780:48..3091622816808.713755-CDS-M-pyrifera_M_contig89780:48..309Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89780 49..309 +
1692278190.9825108-CDS-M-pyrifera_M_contig89780:48..3091692278190.9825108-CDS-M-pyrifera_M_contig89780:48..309Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89780 49..309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89780.20811.1prot_M-pyrifera_M_contig89780.20811.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89780 49..309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89780.20811.1

>prot_M-pyrifera_M_contig89780.20811.1 ID=prot_M-pyrifera_M_contig89780.20811.1|Name=mRNA_M-pyrifera_M_contig89780.20811.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
PSAHRLQLGLPGYLIPFATLAFVPQRQKWPSDAPSPPVFLMISTHFTAPP
SVPITPAILKPGGLKRNSTVEPWAFTSHLPSRLRTL*
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mRNA from alignment at M-pyrifera_M_contig89780:49..309+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89780.20811.1 ID=mRNA_M-pyrifera_M_contig89780.20811.1|Name=mRNA_M-pyrifera_M_contig89780.20811.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig89780:49..309+ (Macrocystis pyrifera P11B4 male)
CCCAGTGCTCATCGTTTACAGCTAGGACTACCGGGGTATCTAATCCCGTT
CGCTACCCTAGCTTTCGTGCCTCAGCGTCAGAAATGGCCCAGTGATGCGC
CTTCGCCACCGGTGTTCCTGATGATATCAACGCATTTCACCGCTCCACCA
TCAGTTCCCATCACCCCTGCCATCCTCAAGCCTGGTGGTTTGAAACGCAA
TTCCACGGTTGAGCCGTGGGCTTTCACATCTCACCTACCAAGCCGCCTAC
GCACGCTTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89780:49..309+

>mRNA_M-pyrifera_M_contig89780.20811.1 ID=mRNA_M-pyrifera_M_contig89780.20811.1|Name=mRNA_M-pyrifera_M_contig89780.20811.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig89780:49..309+ (Macrocystis pyrifera P11B4 male)
CCCAGTGCTCATCGTTTACAGCTAGGACTACCGGGGTATCTAATCCCGTT
CGCTACCCTAGCTTTCGTGCCTCAGCGTCAGAAATGGCCCAGTGATGCGC
CTTCGCCACCGGTGTTCCTGATGATATCAACGCATTTCACCGCTCCACCA
TCAGTTCCCATCACCCCTGCCATCCTCAAGCCTGGTGGTTTGAAACGCAA
TTCCACGGTTGAGCCGTGGGCTTTCACATCTCACCTACCAAGCCGCCTAC
GCACGCTTTAACCCAGTGCTCATCGTTTACAGCTAGGACTACCGGGGTAT
CTAATCCCGTTCGCTACCCTAGCTTTCGTGCCTCAGCGTCAGAAATGGCC
CAGTGATGCGCCTTCGCCACCGGTGTTCCTGATGATATCAACGCATTTCA
CCGCTCCACCATCAGTTCCCATCACCCCTGCCATCCTCAAGCCTGGTGGT
TTGAAACGCAATTCCACGGTTGAGCCGTGGGCTTTCACATCTCACCTACC
AAGCCGCCTACGCACGCTTTAA
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