mRNA_M-pyrifera_M_contig89611.20777.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89611.20777.1
Unique NamemRNA_M-pyrifera_M_contig89611.20777.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89611.20777.1 vs. uniprot
Match: A0A7S0J8M1_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J8M1_9EUKA)

HSP 1 Score: 119 bits (299), Expect = 5.810e-30
Identity = 69/141 (48.94%), Postives = 91/141 (64.54%), Query Frame = 1
Query:    1 IRYTNTAGDRMLLVLPTRLKVSPERTQVESYVNTEAVALHAIHASAGMAQKGEYASARVNLISTQRLLQRCMKTRQNQTDYLSFIVQAEKLDQFMREAQAQATLLGAKAEHGADGEWKRDDEAAKAMYQMKTVSLQSFRSR 423
            +RYT++ G  ML V+   L+++  R   E  +N+   AL AIH +A +AQ+G Y  AR+ LISTQRLLQR M+T  +Q DYLSF+VQAEKLDQFMRE Q Q  + G+K             EAAKA++QMK VS  +F +R
Sbjct:  193 LRYTSSTGKAMLTVIEASLELTSSRDHAEEALNSTVAALSAIHRAAQLAQQGLYHEARLTLISTQRLLQRAMRTAAHQRDYLSFVVQAEKLDQFMREVQQQEAVFGSKGXXXXXX--XXXXEAAKAIFQMKAVSSAAFHAR 331          
BLAST of mRNA_M-pyrifera_M_contig89611.20777.1 vs. uniprot
Match: A0A7S2FPC2_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2FPC2_9DINO)

HSP 1 Score: 113 bits (282), Expect = 1.090e-28
Identity = 67/143 (46.85%), Postives = 93/143 (65.03%), Query Frame = 1
Query:    1 IRYTNTAGDRMLLVLPTRLKVSPERTQVESYVNTEAVALHAIHASAGMAQKGEYASARVNLISTQRLLQRCMKTRQNQTDYLSFIVQAEKLDQFMREAQAQATLLGA--KAEHGADGEWKRDDEAAKAMYQMKTVSLQSFRSR 423
            +RYT  +G+ +L VL  R   +  R   E  ++   V L  IHA+A +AQ G+Y SARV LIST RLLQR M+T ++Q  YLSF+VQAEKLD FMRE ++Q  + G    A+ G      RDD+A+++MYQMK++S++ F  R
Sbjct:   64 LRYTRPSGEEVLQVLTARRPATSCRDTAEGDIDGTCVGLAGIHAAARLAQDGQYRSARVQLISTCRLLQRAMRTPRHQEAYLSFVVQAEKLDGFMRERESQEQVFGGDRSAQRG------RDDDASRSMYQMKSLSVEEFAGR 200          
BLAST of mRNA_M-pyrifera_M_contig89611.20777.1 vs. uniprot
Match: A0A7R9Z9N3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z9N3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.340e-28
Identity = 67/141 (47.52%), Postives = 87/141 (61.70%), Query Frame = 1
Query:    1 IRYTNTAGDRMLLVLPTRLKVSPERTQVESYVNTEAVALHAIHASAGMAQKGEYASARVNLISTQRLLQRCMKTRQNQTDYLSFIVQAEKLDQFMREAQAQATLLGAKAEHGADGEWKRDDEAAKAMYQMKTVSLQSFRSR 423
            +RYT   G++ LLV    L ++  R + E+ ++   +ALH I  +A +AQ G Y  ARV+ IS QRLLQR M T  +Q  YLS+IVQAEKLDQFMREA+ Q  + G            RDDEA+KAMYQMK V   +F +R
Sbjct:   20 LRYTKPDGEQRLLVRTLALPITVNREEAEADIDATVLALHTIQGAARLAQMGRYPDARVSQISAQRLLQRAMYTEAHQQAYLSYIVQAEKLDQFMREAEMQEKVFGTSKCRPKT----RDDEASKAMYQMKNVCRTAFFAR 156          
BLAST of mRNA_M-pyrifera_M_contig89611.20777.1 vs. uniprot
Match: L8GTW0_ACACA (Uncharacterized protein (Fragment) n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GTW0_ACACA)

HSP 1 Score: 106 bits (264), Expect = 3.740e-26
Identity = 67/140 (47.86%), Postives = 87/140 (62.14%), Query Frame = 1
Query:    1 IRYTNTAGDRMLLVLPTRLKVSPERTQVESYVNTEAVALHAIHASAGMAQKGEYASARVNLISTQRLLQRCMKTRQNQTDYLSFIVQAEKLDQFMREAQAQATLLGAKAEHGADGEWK--RDDEAAKAMYQMKTVSLQSF 414
            I YTN  G + L V+ T   V+  R   E+ +N+  V L A+H SA +AQKG+Y  ARVNLIS+ RLLQR M T + Q +Y++FI Q+E+LD FMREAQ Q  +L  +       E K  RDD AAK + QMK VS  +F
Sbjct:   44 ITYTNGEGVKCLRVVCTSRPVTHSREGAETAINSAIVGLAAVHRSAALAQKGDYLEARVNLISSMRLLQRGMLTSKQQREYINFIRQSERLDGFMREAQQQEEMLAMQQSRVTVEERKMARDDSAAKNIVQMKLVSSAAF 183          
BLAST of mRNA_M-pyrifera_M_contig89611.20777.1 vs. uniprot
Match: A0A7S4IVD6_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IVD6_9EUKA)

HSP 1 Score: 102 bits (255), Expect = 5.230e-23
Identity = 63/138 (45.65%), Postives = 92/138 (66.67%), Query Frame = 1
Query:    1 IRYTNTAGDRMLLVLPTRLKVSPERTQVESYVNTEAVALHAIHASAGMAQKGEYASARVNLISTQRLLQRCMKTRQNQTDYLSFIVQAEKLDQFMREAQAQATLLGAKAEHGADGEWKRDDEAAKAMYQMKTVSLQSF 414
            I YT+  G+R + V  TR +V+ +R  ++   N+  VA+ AIH +A +AQ+  Y  ARV L+STQRLLQR M+    Q +YL FIVQAEKLD FMREA+ Q  +L   A+   D     DD+A+K+++QMK+++L++F
Sbjct:  305 IAYTDKYGNRKMFVETTRFEVNGDRESIDRNFNSSVVAVEAIHRAAALAQQKLYDEARVLLVSTQRLLQRNMQVDGCQQNYLYFIVQAEKLDGFMREAKMQEEIL---AKTAGDP----DDDASKSIFQMKSLTLKNF 435          
BLAST of mRNA_M-pyrifera_M_contig89611.20777.1 vs. uniprot
Match: A0A813JQP6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JQP6_POLGL)

HSP 1 Score: 102 bits (253), Expect = 1.630e-22
Identity = 59/128 (46.09%), Postives = 85/128 (66.41%), Query Frame = 1
Query:    1 IRYTNTAGDRMLLVLPTRLKVSPERTQVESYVNTEAVALHAIHASAGMAQKGEYASARVNLISTQRLLQRCMKTRQNQTDYLSFIVQAEKLDQFMREAQAQATLLGAKAEHGADGEWKRDDEAAKAMY 384
            + YT  +G+ +L VL  +   S  R + E+ +N  AVAL  +H +A +AQ+G Y SAR  LIST RLLQR M+ + +Q  YL+F+VQAEKLD FMRE + Q  +LG+ +  G +G   RDD+A+++MY
Sbjct:  410 LHYTLPSGEELLQVLTAQPLCSSSREEAEADINGTAVALWGLHKAARLAQQGTYRSARSELISTCRLLQRAMRDQAHQEAYLAFVVQAEKLDGFMRERELQEQVLGSSSTAGQNG---RDDDASRSMY 534          
BLAST of mRNA_M-pyrifera_M_contig89611.20777.1 vs. uniprot
Match: A0A7S0B491_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0B491_9DINO)

HSP 1 Score: 101 bits (252), Expect = 2.630e-22
Identity = 65/141 (46.10%), Postives = 89/141 (63.12%), Query Frame = 1
Query:    1 IRYTNTAGDRMLLVLPTRLKVSPERTQVESYVNTEAVALHAIHASAGMAQKGEYASARVNLISTQRLLQRCMKTRQNQTDYLSFIVQAEKLDQFMREAQAQATLLGAKAEHGADGEWKRDDEAAKAMYQMKTVSLQSFRSR 423
            +RYT   G   L V  T + VS +R  +E   + E VA+ A+  +A +AQ G Y +AR  LISTQRL QR M +   Q+ YL FI+QAEKLDQF+RE +AQ  L G +       +  RDDEAA+A+YQMK+++L  FR++
Sbjct:  532 LRYTGRDGGEYLAVANTDVSVSCDRAALEEAADPEVVAVAAVQRAARLAQDGSYRAARSELISTQRLFQRGMGSPFMQSAYLPFILQAEKLDQFIREREAQE-LAGTRQADRRKAD--RDDEAARAIYQMKSLNLARFRAQ 669          
BLAST of mRNA_M-pyrifera_M_contig89611.20777.1 vs. uniprot
Match: A0A7S3M089_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M089_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.470e-22
Identity = 52/107 (48.60%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 IRYTNTAGDRMLLVLPTRLKVSPERTQVESYVNTEAVALHAIHASAGMAQKGEYASARVNLISTQRLLQRCMKTRQNQTDYLSFIVQAEKLDQFMREAQAQATLLGA 321
            +RY+   G+++L V   R   S  R + E+ +  EAVAL  IH +A +AQ G+Y +AR+ LIS  RLLQR M++ Q+Q  YLSF+VQAEKLD FMRE ++Q  + GA
Sbjct:    9 LRYSRPNGEQVLQVFTVRQSASTIRDESEADIRGEAVALSGIHNAARLAQLGDYRAARIELISNCRLLQRAMRSEQHQESYLSFVVQAEKLDGFMRERESQDKVFGA 115          
BLAST of mRNA_M-pyrifera_M_contig89611.20777.1 vs. uniprot
Match: A0A7S4KVA2_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KVA2_9EUKA)

HSP 1 Score: 95.1 bits (235), Expect = 1.240e-21
Identity = 63/159 (39.62%), Postives = 85/159 (53.46%), Query Frame = 1
Query:    1 IRYTNTAGDRMLLVLPTRLKVSPERTQVESY------------------VNTEAVALHAIHASAGMAQKGEYASARVNLISTQRLLQRCMKTRQNQTDYLSFIVQAEKLDQFMREAQAQATLLGAKAEHGADGEWKRDDEAAKAMYQMKTVSLQSFRSR 423
            ++Y    G+ +L+V    + ++ ER   E                    VN   V + A+  +A +A + +Y  AR+ LISTQRLLQR M   ++Q DYLSFIVQAEKLDQFMREAQ    + G K          RDDEA+KAM+ MK VS   ++ R
Sbjct:   52 VKYVGKGGEEVLVVETREMGITRERGVAEGKEKXXXXXXXXXXXXREEGVNCGTVGITAVRKAASLASEMKYMEARILLISTQRLLQRVMSDERSQDDYLSFIVQAEKLDQFMREAQRSEEVFGKKL--------GRDDEASKAMFSMKNVSRHEWKIR 202          
BLAST of mRNA_M-pyrifera_M_contig89611.20777.1 vs. uniprot
Match: A0A6B2L0P9_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L0P9_9EUKA)

HSP 1 Score: 89.7 bits (221), Expect = 3.590e-18
Identity = 54/138 (39.13%), Postives = 83/138 (60.14%), Query Frame = 1
Query:    1 IRYTNTAGDRMLLVLPTRLKVSPERTQVESYVNTEAVALHAIHASAGMAQKGEYASARVNLISTQRLLQRCMKTRQNQTDYLSFIVQAEKLDQFMREAQAQATLLGAKAEHGADGEWKRDDEAAKAMYQMKTVSLQSF 414
            I +T   G + L +      ++  R   E  +++  V +H++H SA +AQ G+Y  AR+NLIS QRLLQR MK++ +Q +Y++FI QAE+LD FMREAQ   T+L    +     +  RDD AA+ + +MK ++   F
Sbjct:  383 ITFTLPDGSKHLRIYTKEQPITENRDISEQNLHSNIVGIHSLHESATLAQLGDYQQARINLISVQRLLQRGMKSKNDQKEYINFIKQAERLDGFMREAQHLDTVL---KQTNQTRKQTRDDAAARNIVKMKKLTKSVF 517          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89611.20777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A7S0J8M1_9EUKA5.810e-3048.94Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S2FPC2_9DINO1.090e-2846.85Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7R9Z9N3_9STRA1.340e-2847.52Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
L8GTW0_ACACA3.740e-2647.86Uncharacterized protein (Fragment) n=1 Tax=Acantha... [more]
A0A7S4IVD6_9EUKA5.230e-2345.65Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A813JQP6_POLGL1.630e-2246.09Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S0B491_9DINO2.630e-2246.10Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
A0A7S3M089_9STRA4.470e-2248.60Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S4KVA2_9EUKA1.240e-2139.62Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A6B2L0P9_9EUKA3.590e-1839.13Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89611contigM-pyrifera_M_contig89611:376..801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size396
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816807.2199147-CDS-M-pyrifera_M_contig89611:375..7711622816807.2199147-CDS-M-pyrifera_M_contig89611:375..771Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89611 376..771 -
1692278190.1009784-CDS-M-pyrifera_M_contig89611:375..7711692278190.1009784-CDS-M-pyrifera_M_contig89611:375..771Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89611 376..771 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816807.231131-UTR-M-pyrifera_M_contig89611:771..8011622816807.231131-UTR-M-pyrifera_M_contig89611:771..801Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89611 772..801 -
1692278190.1156526-UTR-M-pyrifera_M_contig89611:771..8011692278190.1156526-UTR-M-pyrifera_M_contig89611:771..801Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89611 772..801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89611.20777.1prot_M-pyrifera_M_contig89611.20777.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89611 376..771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89611.20777.1

>prot_M-pyrifera_M_contig89611.20777.1 ID=prot_M-pyrifera_M_contig89611.20777.1|Name=mRNA_M-pyrifera_M_contig89611.20777.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MLLVLPTRLKVSPERTQVESYVNTEAVALHAIHASAGMAQKGEYASARVN
LISTQRLLQRCMKTRQNQTDYLSFIVQAEKLDQFMREAQAQATLLGAKAE
HGADGEWKRDDEAAKAMYQMKTVSLQSFRSR*
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mRNA from alignment at M-pyrifera_M_contig89611:376..801-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89611.20777.1 ID=mRNA_M-pyrifera_M_contig89611.20777.1|Name=mRNA_M-pyrifera_M_contig89611.20777.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig89611:376..801- (Macrocystis pyrifera P11B4 male)
ATCCGCTACACCAACACAGCGGGAGACCGGATGCTGTTGGTGCTACCCAC TAGGCTGAAGGTCTCTCCTGAGCGCACCCAAGTTGAGTCTTATGTGAACA CTGAGGCAGTTGCCCTGCATGCCATTCACGCCAGCGCGGGCATGGCGCAG AAGGGCGAGTACGCCTCGGCTCGAGTCAACCTCATCTCGACGCAACGTCT TCTCCAGCGCTGTATGAAGACTCGGCAGAACCAGACGGACTACCTCAGCT TCATCGTGCAGGCTGAGAAGCTGGACCAATTCATGAGGGAGGCCCAAGCG CAGGCCACGCTGCTTGGCGCGAAGGCCGAACACGGCGCCGACGGAGAGTG GAAGCGTGATGACGAGGCAGCGAAGGCCATGTACCAGATGAAGACAGTCT CCCTGCAGAGCTTCCGATCGCGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89611:376..801-

>mRNA_M-pyrifera_M_contig89611.20777.1 ID=mRNA_M-pyrifera_M_contig89611.20777.1|Name=mRNA_M-pyrifera_M_contig89611.20777.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig89611:376..801- (Macrocystis pyrifera P11B4 male)
ATGCTGTTGGTGCTACCCACTAGGCTGAAGGTCTCTCCTGAGCGCACCCA
AGTTGAGTCTTATGTGAACACTGAGGCAGTTGCCCTGCATGCCATTCACG
CCAGCGCGGGCATGGCGCAGAAGGGCGAGTACGCCTCGGCTCGAGTCAAC
CTCATCTCGACGCAACGTCTTCTCCAGCGCTGTATGAAGACTCGGCAGAA
CCAGACGGACTACCTCAGCTTCATCGTGCAGGCTGAGAAGCTGGACCAAT
TCATGAGGGAGGCCCAAGCGCAGGCCACGCTGCTTGGCGCGAAGGCCGAA
CACGGCGCCGACGGAGAGTGGAAGCGTGATGACGAGGCAGCGAAGGCCAT
GTACCAGATGAAGACAGTCTCCCTGCAGAGCTTCCGATCGCGGTGAATGC
TGTTGGTGCTACCCACTAGGCTGAAGGTCTCTCCTGAGCGCACCCAAGTT
GAGTCTTATGTGAACACTGAGGCAGTTGCCCTGCATGCCATTCACGCCAG
CGCGGGCATGGCGCAGAAGGGCGAGTACGCCTCGGCTCGAGTCAACCTCA
TCTCGACGCAACGTCTTCTCCAGCGCTGTATGAAGACTCGGCAGAACCAG
ACGGACTACCTCAGCTTCATCGTGCAGGCTGAGAAGCTGGACCAATTCAT
GAGGGAGGCCCAAGCGCAGGCCACGCTGCTTGGCGCGAAGGCCGAACACG
GCGCCGACGGAGAGTGGAAGCGTGATGACGAGGCAGCGAAGGCCATGTAC
CAGATGAAGACAGTCTCCCTGCAGAGCTTCCGATCGCGGTGA
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