mRNA_M-pyrifera_M_contig89603.20773.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig89603.20773.1 vs. uniprot
Match: A0A2E2VYY4_9GAMM (Uncharacterized protein n=1 Tax=Porticoccus sp. TaxID=2024853 RepID=A0A2E2VYY4_9GAMM) HSP 1 Score: 70.9 bits (172), Expect = 1.910e-10 Identity = 51/206 (24.76%), Postives = 97/206 (47.09%), Query Frame = 1 Query: 88 ATEPGSRWLVARALSFTGEHSVRIARIRGRLIDHIELTEVAVDAAGSRVNVSELAFSWSPRALLTGELLIERLRLAGVEVTPPPPSADSERPTAVSIPALP--LPGTIRDLTLLRVTIHTPDQAVVIDELSLAANWDRDRMQLTNVILNTGDHRLTADAMLGIGDAARHELTASWRGKLGDDPASATIVAAGPLQALTVELDVDGP 699 AT PGS WLVA+A+SF+G H + ++ G L++ I T + ++ +G ++ + A W LL G++ I+ L A ++V P + D P+ P+L +P T+ LT+ R + ++ ++ +S A + + ++L +IL + +L + R + W + + G L +T+E + P Sbjct: 33 ATRPGSHWLVAKAVSFSGTH-ISWNKMDGTLMEGIAFTGLVIERSGLQITATSAAGQWQLLGLLGGQVPIQSLEFADLQVHLEPATTDP--PSKFVWPSLNSVMPVTLERLTIDRFRYRSGPDSLALETISAAGSINLLGIELRELILRQPEQQLALQGTIRAKPPYRLNIALQWHTEFQQNHFEGEARLGGNLATMTIEHRLAAP 235
BLAST of mRNA_M-pyrifera_M_contig89603.20773.1 vs. uniprot
Match: L0DT65_THIND (Putative exported protein n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) TaxID=1255043 RepID=L0DT65_THIND) HSP 1 Score: 67.8 bits (164), Expect = 2.170e-9 Identity = 68/206 (33.01%), Postives = 95/206 (46.12%), Query Frame = 1 Query: 13 RLLAWTSGLALTIALAVLCAAWYLTATEPGSRWLVARALSFTGEHSVRIARIRGRLIDHIELTEVAVDAAGSRVNVSELAFSWSPRALLTGELLIERLRLAGVEVTPPPPSADSERPTAVSIPALP----LPGTIR--DLTLLRVTIHTPDQAVV-IDELSLAANWDRDRMQLTNVILNTGDHRLTADAMLGIGDAARHELTASWR 609 RLL G L +AL + A L ATE G+RWL A+A R AR+ G L + L ++AVDAAG+RV ++ ALL + + L LAG+ V P AD ERP + P LP LP ++ L V + ++ ID L+L + D D +QL ++ L + DA + A L WR Sbjct: 6 RLLFGLLGWVLILALLAVAGAVALIATEDGTRWLFAQAERHA-PMEFRAARVEGTLFRGLTLGDLAVDAAGTRVELTSGRIELDALALLRLTVRVRDLDLAGLVVDLP--EADPERPEPTATPELPESVDLPVRVQVDRFRLADVELRQEGATLLEIDRLALRLDADADGLQLADLELALPGTEVWLDAGVQPAGAWPLSLEGRWR 208
BLAST of mRNA_M-pyrifera_M_contig89603.20773.1 vs. uniprot
Match: A0A7C1D2E8_9GAMM (Uncharacterized protein n=1 Tax=Thioalkalivibrio sp. TaxID=2093813 RepID=A0A7C1D2E8_9GAMM) HSP 1 Score: 65.9 bits (159), Expect = 9.490e-9 Identity = 57/190 (30.00%), Postives = 90/190 (47.37%), Query Frame = 1 Query: 82 LTATEPGSRWLVARALSFT-GEHSVRIARIRGRLIDHIELTEVAVDAAGSRVNVSELAFSWSPRALLTGELLIERLRLAGVEVT----PPPPSADSERPTAVSIPALPLPGTIRDLTLLRVTIHTPD-QAVVIDELSLAANWDRDRMQLTNVILNTGDHRLTADAMLGIGDAARHELTASWRGKLGDDPA 633 L TEPGSRWLV R ++ GE + I R+RG L+ +EL V + A ++ EL + AL G L + RLR+ G+++ P P +SE A+PL + D+ RV++ + + + ID + LAA D + ++ + T D + A G+ L WR +L + A Sbjct: 23 LLGTEPGSRWLVQRGVALAPGE--LTIERVRGTLLQGLELEGVRYEDALLDASLDELEIRVNALALFAGRLSVTRLRVEGLDLVMHPAPDEPGVESEPFRLPDSVAVPLAIDLSDVEFTRVSLRFGEGEPLRIDAMGLAATVDDGQARIHAFSVETPDLGVELAAEAGLAMPYPLGLELDWRLRLPESVA 210
BLAST of mRNA_M-pyrifera_M_contig89603.20773.1 vs. uniprot
Match: UPI00040BAC79 (translocation/assembly module TamB domain-containing protein n=1 Tax=Paludibacterium yongneupense TaxID=400061 RepID=UPI00040BAC79) HSP 1 Score: 63.9 bits (154), Expect = 4.300e-8 Identity = 64/225 (28.44%), Postives = 102/225 (45.33%), Query Frame = 1 Query: 25 WTSGLALTIALAVLCAA--WYLTATEPGSRWLVARALSFTGEHSVRIARIRGRLIDHIELTEVAVDAAGSRVNVSELAFSWSPRALLTGELLIERLRLAGVEVTPPPPSADSERPTAVSIP---ALPLPGTIRDLTLLRVTIHTPDQAVVIDELSLAANWDRD----RMQLTNVILNTGDHRLTADAMLGIGDAARHEL--TASWRGKLGDDPASATIVAAGPLQ 666 W +G A+ +A L AA + L+AT+ G W + S +G +R+A ++G L EL V + A ++ LA +W P L G L+++RL L V +TP RP +P +LPLP ++ L + +T+ D + +LAA + D L + L +G A A L + D + T + G L D P + + +G LQ Sbjct: 22 WRAGCAVVLAALALAAAAGFGLSATQTGFAWTLGHLASASGGR-LRLASVQGTLWRGFELGGVRLKTAAFDADIDSLAVAWQPAQLWRGRLVLDRLALGAVMLTP------HARPGPAVLPGDLSLPLPVEVKRLDIGSLTVLPAD----LRAYALAARYRYDGRAHSFTLDRITLPSGQ----ASARLRVADMRPFAVSGTLAANGTLDDVPVAGRLDLSGSLQ 231
BLAST of mRNA_M-pyrifera_M_contig89603.20773.1 vs. uniprot
Match: D3RSV6_ALLVD (Uncharacterized protein n=3 Tax=Allochromatium TaxID=85072 RepID=D3RSV6_ALLVD) HSP 1 Score: 62.8 bits (151), Expect = 1.050e-7 Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 1 Query: 19 LAWTSGLALTIALAVLCAAWYLTATEPGSRWLVARALSFTGEHSVRIARIRGRLIDHIELTEVAVDAAGSRVNVSELAFSWSPRALLTGELLIERLRLAGVEVTPPPPSADSERPTAVSIPALPLPGTIRDLTLLRVTI 435 L W G L + L + L TE G R + A E ++R+ I GR++ + L++VA+D + + L WSPRALL+G L IERL + ++V P SA+ + P + LPL + +L+L R+ I Sbjct: 40 LGWLIGSLLALVLILAAGLGVLLGTESGLRLGLELAQRVVPE-TLRVGGIEGRVLGRLRLSDVALDRPTLGLRIGVLELDWSPRALLSGVLDIERLAVRDLDVALGP-SAEDDEPLTLPAIVLPLGVEVGELSLERLRI 176
BLAST of mRNA_M-pyrifera_M_contig89603.20773.1 vs. uniprot
Match: A0A6B3W4A3_9GAMM (Uncharacterized protein n=1 Tax=Wenzhouxiangella sp. XN201 TaxID=2710755 RepID=A0A6B3W4A3_9GAMM) HSP 1 Score: 60.8 bits (146), Expect = 4.700e-7 Identity = 57/228 (25.00%), Postives = 103/228 (45.18%), Query Frame = 1 Query: 31 SGLALTIALAVLCAAW-YLTATEPGSRWLVARALSFTGEHSVRIARIRGRLIDHIELTEVAVDAAGSRVNVSELAFSWSPRALLTGELLIERLRLAGVEVTPPPPSADSE---RPTAVSIPALPLPGTIRDLTLLRVTIHTPDQAVVIDELSLAANWDRDRMQLTNVILNTGDHRLTADAMLGIGDAARHELTASWRGKLGDDPA-SATIVAAGPLQALTVELDVDGP 699 +G+A+ + L + +AW +LT +E G+RW +ARA + + + G L I L + AG+RVN + + +++ LR G++V P A E P +S A P+ + + L ++T+H ++ + I+ ++LA + DR++L + + TA + L+ + +L DD +A + G L AL L GP Sbjct: 8 AGIAVLVILLLAGSAWLWLTRSESGARWALARAAGTVEQ--LEYDALSGGLASGITLEGLRFAHAGTRVNAESIELAARIELFAGPRVVVRHLRGRGIDVHLPREDAPDEPAAEPFDLSALASPVEVIVEQVELRQITVHGSEEPLEIERVALAGRYG-DRLELERFEIVADPGQATAQGEWALTQRGSGHLSVNATMRLDDDSEQTARLDLEGRLDALDFVLTSSGP 232
BLAST of mRNA_M-pyrifera_M_contig89603.20773.1 vs. uniprot
Match: A0A8J7PZ55_9GAMM (Translocation/assembly module TamB domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A8J7PZ55_9GAMM) HSP 1 Score: 59.3 bits (142), Expect = 1.550e-6 Identity = 62/193 (32.12%), Postives = 90/193 (46.63%), Query Frame = 1 Query: 34 GLALTIALAVLCA-AWYLTATEPGSRWLVARALSFTGEHSVRIARIRGRLIDHIELTEVAVD--AAGSRVNVSELAFSWSPRALLTGELLIERLRLAGVEV-------TPPPPSADSERPTAVSIPALPLPGTIRDLTLLRV---TIH-TPDQAVVI--DELSLAANWDRDRMQLTNVILNTGDHRLTADAML 564 G+AL I A++ A AW+L ATE G+R+ V RA S + IA+ G L +EL +VA A+G V V L + LL + L + GV+V TPPPP D+ +P+ + PL D+ L R+ T+H T D V D L AA W + + + L D ++ D + Sbjct: 9 GIALAIVFALILALAWWLLATESGTRFAVERAKSALAG-KLAIAQATGALTSPLELHDVAYKDPASGLDVKVKTLKLDYEFFGLLRKTAHVRSLDIDGVDVALTTVPATPPPP--DAAKPSVAQLLTPPL-----DILLDRLHVGTVHVTQDGKPVFASDSLDAAATWTASALTVKQLALRAPDGKVDLDGAI 193
BLAST of mRNA_M-pyrifera_M_contig89603.20773.1 vs. uniprot
Match: A0A0M5IVL6_9DELT (Autotransporter secretion inner membrane protein TamB n=1 Tax=Desulfuromonas soudanensis TaxID=1603606 RepID=A0A0M5IVL6_9DELT) HSP 1 Score: 57.8 bits (138), Expect = 5.100e-6 Identity = 58/204 (28.43%), Postives = 89/204 (43.63%), Query Frame = 1 Query: 43 LTIALAVLCAAWYLTATEPGSRWLVARALSFTGEHSVRIARIRGRLIDHIELTEVAVDAAGSRVNVSELAFSWSPRALLTGELLIERLRLAGVEVT-----PPPPSADSERPT--AVSIPALPLPGTIRDLTLLRVTIH-TPDQAVVIDELSLAANWDRDRMQLTNVILNTGDHRLTADAMLGIGDAARHELTASWRGKLGDDP 630 L + LA+L +L T G+R L+ RA+S + + GRL D + L V V+ L +W+PR L G L IE L +A +E+ RP VS L L GT+ L L RVTIH + +V++E +L + L+ + T R++ + G+ + L A G+ D+P Sbjct: 14 LLVGLALLTGGAWLVGTTNGTRTLL-RAVSLWTPLKIDAGSVSGRLADELLLENVRVNWPRGEAATGVLRLNWNPRQLFQGNLAIEELEVADLEIRLGKGGGSVSGGKGARPLWPLVSGAPLGLEGTLESLQLSRVTIHGLGGKPLVLEEATLHLELRDGVLALSRLEAQTPYGRVSGEVSAGL---TKPSLRADLLGEPADNP 213
BLAST of mRNA_M-pyrifera_M_contig89603.20773.1 vs. uniprot
Match: UPI00075C5693 (translocation/assembly module TamB domain-containing protein n=2 Tax=Burkholderia cepacia complex TaxID=87882 RepID=UPI00075C5693) HSP 1 Score: 56.6 bits (135), Expect = 1.250e-5 Identity = 74/243 (30.45%), Postives = 105/243 (43.21%), Query Frame = 1 Query: 4 RVRRLLAWTSGLALTIALAVLCAAWYLTA--TEPGSRWLVARALSFTGEHSVRIARIRGRLIDHIELTEVAV--------DAAGSRVNVSELAFSWS-PRALLTGELLIERLRLAGVEVT-PPPPSADSERPTAVSIPALPLPGTIRDLTLLRVTIHTPDQAVVIDELSLAANWDRDRMQLTNVILNTGDHRLTADAMLGIGDAARHELTASWRGKLGDDPASATIVAAGPLQALTVELDVDG 696 R R++AWT L + LAVL A L A TE G+R A+ G R+ G L T V + AG+ V + L W+ RA L ++ LR V+V P PS S P +S LPL I DL + + IH +D L+L+ D +L ++T LTA A L TA++ GKL D+P +A+ +G L+AL ++ G Sbjct: 34 RAGRIVAWT--LVTIVLLAVLAAGLVLAAATTERGTRLAWQTAVRVLG------GRLAGTLDGGALATGVRLRGFAWTSPGGAGTEVRIDRLDGRWALTRA--PWRLTVDYLRAGTVDVRIAPGPSTPSTTPQDLS---LPLQLRIDDLRVDHLAIHEGGSTTQLDHLALSGRSDGRHHELALDGVDTPYGALTARAKLDGVKPFALTGTATYAGKLADEPVNASANVSGSLEALVADVTASG 263
BLAST of mRNA_M-pyrifera_M_contig89603.20773.1 vs. uniprot
Match: A0A372BUY5_9GAMM (Uncharacterized protein n=1 Tax=Wenzhouxiangella sp. 15181 TaxID=2301224 RepID=A0A372BUY5_9GAMM) HSP 1 Score: 56.2 bits (134), Expect = 1.670e-5 Identity = 55/227 (24.23%), Postives = 100/227 (44.05%), Query Frame = 1 Query: 37 LALTIALAVLCAAW-YLTATEPGSRWLVARALSFTGEHSVRIARIRGRLIDHIELTEVAVDAAGSRVNVSELAFSWSPRALLTGELLIERLRLAGVEVTPPPPSADSE---RPTAVSIPALPLPGTIRDLTLLRVTIHTPDQAVVIDELSLAANWDRDRMQLTNVILNTGDHRLTADAMLGIGDAARHELTASWRGKLGDDPA--SATIVAAGPLQALTVELDVDGP 699 +AL + +L +AW +LT +E G+RW +ARA + + G L I L V + AG+R+N + + +++ LR G+++ P +E P +S P+ + ++ L ++ IHT + I+ ++LA + + + + N+ + R+TA + LT D+ A SA++ G + AL EL GP Sbjct: 10 IALLVVSLLLGSAWLWLTHSESGARWALARAAGSV--ERLEYESLSGGLASGITLEAVRFEHAGTRLNAEAIELAARIDLFAGPRVVVHHLRGRGIDLHLPQTEETTEPADEPFDLSTLTSPIEVIVEEVDLQQLVIHTGEAPQRIERITLAGRYG-ESVDIENLEITADAGRVTAQGQWTLERRGSGRLTIDANTTALDNGAEHSASLTVEGRIDALDFELTTTGP 233 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89603.20773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig89603.20773.1 >prot_M-pyrifera_M_contig89603.20773.1 ID=prot_M-pyrifera_M_contig89603.20773.1|Name=mRNA_M-pyrifera_M_contig89603.20773.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=234bp MRVRRLLAWTSGLALTIALAVLCAAWYLTATEPGSRWLVARALSFTGEHSback to top mRNA from alignment at M-pyrifera_M_contig89603:41..742+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig89603.20773.1 ID=mRNA_M-pyrifera_M_contig89603.20773.1|Name=mRNA_M-pyrifera_M_contig89603.20773.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig89603:41..742+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig89603:41..742+ >mRNA_M-pyrifera_M_contig89603.20773.1 ID=mRNA_M-pyrifera_M_contig89603.20773.1|Name=mRNA_M-pyrifera_M_contig89603.20773.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1404bp|location=Sequence derived from alignment at M-pyrifera_M_contig89603:41..742+ (Macrocystis pyrifera P11B4 male)back to top |