mRNA_M-pyrifera_M_contig8958.20770.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8958.20770.1
Unique NamemRNA_M-pyrifera_M_contig8958.20770.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8958.20770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8958contigM-pyrifera_M_contig8958:4186..4968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size785
Cds size489
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.8368318-UTR-M-pyrifera_M_contig8958:4185..44791622816806.8368318-UTR-M-pyrifera_M_contig8958:4185..4479Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8958 4186..4479 +
1692278189.8630393-UTR-M-pyrifera_M_contig8958:4185..44791692278189.8630393-UTR-M-pyrifera_M_contig8958:4185..4479Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8958 4186..4479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.85439-CDS-M-pyrifera_M_contig8958:4479..49681622816806.85439-CDS-M-pyrifera_M_contig8958:4479..4968Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8958 4480..4968 +
1692278189.8738086-CDS-M-pyrifera_M_contig8958:4479..49681692278189.8738086-CDS-M-pyrifera_M_contig8958:4479..4968Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8958 4480..4968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8958.20770.1prot_M-pyrifera_M_contig8958.20770.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8958 4480..4968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8958.20770.1

>prot_M-pyrifera_M_contig8958.20770.1 ID=prot_M-pyrifera_M_contig8958.20770.1|Name=mRNA_M-pyrifera_M_contig8958.20770.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
MNGQKRALCFKPEYQVLHTLTLLLLMLILSLQNKRTKIACPAASPAPIYI
DHSERKNSAYIFSRKERGRQAKSMFTPSPGKISRAKRAINHQRVYSLYLV
RRTYMHARCLSQRHKVLRKKGCIELTQHVRTNAISLEHSDTDRNTDKQST
QYSWSSIHPAGKT
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mRNA from alignment at M-pyrifera_M_contig8958:4186..4968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8958.20770.1 ID=mRNA_M-pyrifera_M_contig8958.20770.1|Name=mRNA_M-pyrifera_M_contig8958.20770.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=783bp|location=Sequence derived from alignment at M-pyrifera_M_contig8958:4186..4968+ (Macrocystis pyrifera P11B4 male)
CTCATCACACGTACGTTTGGTTTCGGTAGTGTCTTATCTTGTCGCTATTC
ATACCGTAGCTACTTACCGGTACCAAATTTGACACGGTATTGTGATATCT
CATCACACAGCAGTGTGGTATCATATCACAGGTGGCGTATTATCTTCTCA
CACGTCTGATGCGGTAGCCGTTGATGTCTGCCCCATGCTGCAATGCTTCG
TATATATCCTGGTGGCCATTGAAACCAACCGTGAAAATACCTACTAAACT
GTAGTACAACTCTGCCCCGAATCTAACGATCCTTTGGATGACGTATGAAT
GGACAGAAACGGGCCTTATGCTTCAAACCAGAGTACCAGGTACTGCATAC
CTTAACACTGCTGCTGCTCATGCTCATACTTAGCCTGCAAAATAAAAGAA
CAAAAATCGCGTGTCCTGCTGCCAGCCCCGCCCCAATTTACATCGATCAC
AGCGAAAGGAAGAACAGTGCTTACATATTTTCGCGGAAAGAAAGAGGGCG
GCAGGCAAAATCCATGTTCACGCCGTCCCCTGGTAAGATATCACGGGCCA
AAAGAGCAATCAATCATCAACGCGTCTATAGCCTATACCTGGTACGCCGT
ACGTACATGCATGCCCGATGCCTGTCGCAACGCCACAAAGTCCTGCGGAA
AAAGGGCTGCATCGAGCTGACTCAACACGTCCGCACGAACGCGATTTCTC
TTGAACACTCAGATACAGACAGAAATACAGACAAACAGAGCACACAATAT
TCATGGTCCTCAATTCATCCCGCCGGCAAAACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8958:4186..4968+

>mRNA_M-pyrifera_M_contig8958.20770.1 ID=mRNA_M-pyrifera_M_contig8958.20770.1|Name=mRNA_M-pyrifera_M_contig8958.20770.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig8958:4186..4968+ (Macrocystis pyrifera P11B4 male)
ATGAATGGACAGAAACGGGCCTTATGCTTCAAACCAGAGTACCAGGTACT
GCATACCTTAACACTGCTGCTGCTCATGCTCATACTTAGCCTGCAAAATA
AAAGAACAAAAATCGCGTGTCCTGCTGCCAGCCCCGCCCCAATTTACATC
GATCACAGCGAAAGGAAGAACAGTGCTTACATATTTTCGCGGAAAGAAAG
AGGGCGGCAGGCAAAATCCATGTTCACGCCGTCCCCTGGTAAGATATCAC
GGGCCAAAAGAGCAATCAATCATCAACGCGTCTATAGCCTATACCTGGTA
CGCCGTACGTACATGCATGCCCGATGCCTGTCGCAACGCCACAAAGTCCT
GCGGAAAAAGGGCTGCATCGAGCTGACTCAACACGTCCGCACGAACGCGA
TTTCTCTTGAACACTCAGATACAGACAGAAATACAGACAAACAGAGCACA
CAATATTCATGGTCCTCAATTCATCCCGCCGGCAAAACAATGAATGGACA
GAAACGGGCCTTATGCTTCAAACCAGAGTACCAGGTACTGCATACCTTAA
CACTGCTGCTGCTCATGCTCATACTTAGCCTGCAAAATAAAAGAACAAAA
ATCGCGTGTCCTGCTGCCAGCCCCGCCCCAATTTACATCGATCACAGCGA
AAGGAAGAACAGTGCTTACATATTTTCGCGGAAAGAAAGAGGGCGGCAGG
CAAAATCCATGTTCACGCCGTCCCCTGGTAAGATATCACGGGCCAAAAGA
GCAATCAATCATCAACGCGTCTATAGCCTATACCTGGTACGCCGTACGTA
CATGCATGCCCGATGCCTGTCGCAACGCCACAAAGTCCTGCGGAAAAAGG
GCTGCATCGAGCTGACTCAACACGTCCGCACGAACGCGATTTCTCTTGAA
CACTCAGATACAGACAGAAATACAGACAAACAGAGCACACAATATTCATG
GTCCTCAATTCATCCCGCCGGCAAAACA
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