mRNA_M-pyrifera_M_contig8955.20761.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8955.20761.1
Unique NamemRNA_M-pyrifera_M_contig8955.20761.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8955.20761.1 vs. uniprot
Match: A0A6H5L7C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7C1_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.070e-26
Identity = 55/86 (63.95%), Postives = 72/86 (83.72%), Query Frame = 3 
Query:    3 RKPKIEVVRSVGKVMISTRIENPEIALLAFAESEGNALLAAKRISEGRAYLNELFLAADIIHVTVFLTALKKPGKRGAGALWREGV 260
            R PKIEVVR +GKVMI+TR+E+P +ALLA AES G+  LAA+R+++ RAY++EL LAADI++V VFL AL+KPGKR +GALW  G+
Sbjct:  621 RMPKIEVVRKIGKVMIATRVEDPGVALLALAESRGSVSLAARRVADKRAYIDELCLAADIVNVEVFLRALRKPGKRVSGALWCAGL 706
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BLAST of mRNA_M-pyrifera_M_contig8955.20761.1 vs. uniprot
Match: D8LF73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF73_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 4.610e-25
Identity = 52/77 (67.53%), Postives = 65/77 (84.42%), Query Frame = 3 
Query:   30 SVGKVMISTRIENPEIALLAFAESEGNALLAAKRISEGRAYLNELFLAADIIHVTVFLTALKKPGKRGAGALWREGV 260
            S+ KVMI+TR+ENP +ALLA AES GN  LAA+R+++ RAY+NEL LAADI++V VFL AL KPGKRG+GALWR G+
Sbjct:  861 SIEKVMIATRVENPGLALLALAESRGNVSLAARRVTDERAYINELCLAADIVNVEVFLKALTKPGKRGSGALWRAGL 937
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8955.20761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7C1_9PHAE1.070e-2663.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF73_ECTSI4.610e-2567.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8955contigM-pyrifera_M_contig8955:9182..10491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue3.1e-20
Seed eggNOG ortholog2880.D8LF73
Preferred nameENAH
KEGG koko:K03099,ko:K05746
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of caveolin-mediated endocytosis
EggNOG OGsKOG1029@1,KOG1029@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons3
Model size340
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8955.20761.1prot_M-pyrifera_M_contig8955.20761.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8955 9253..9996 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.2663627-UTR-M-pyrifera_M_contig8955:9181..92521622816806.2663627-UTR-M-pyrifera_M_contig8955:9181..9252Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8955 9182..9252 -
1692278189.5145872-UTR-M-pyrifera_M_contig8955:9181..92521692278189.5145872-UTR-M-pyrifera_M_contig8955:9181..9252Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8955 9182..9252 -
1622816806.2986822-UTR-M-pyrifera_M_contig8955:9996..99991622816806.2986822-UTR-M-pyrifera_M_contig8955:9996..9999Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8955 9997..9999 -
1692278189.543432-UTR-M-pyrifera_M_contig8955:9996..99991692278189.543432-UTR-M-pyrifera_M_contig8955:9996..9999Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8955 9997..9999 -
1622816806.310868-UTR-M-pyrifera_M_contig8955:10450..104911622816806.310868-UTR-M-pyrifera_M_contig8955:10450..10491Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8955 10451..10491 -
1692278189.5517688-UTR-M-pyrifera_M_contig8955:10450..104911692278189.5517688-UTR-M-pyrifera_M_contig8955:10450..10491Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8955 10451..10491 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.2778256-CDS-M-pyrifera_M_contig8955:9252..93761622816806.2778256-CDS-M-pyrifera_M_contig8955:9252..9376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8955 9253..9376 -
1692278189.5262668-CDS-M-pyrifera_M_contig8955:9252..93761692278189.5262668-CDS-M-pyrifera_M_contig8955:9252..9376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8955 9253..9376 -
1622816806.2882833-CDS-M-pyrifera_M_contig8955:9895..99961622816806.2882833-CDS-M-pyrifera_M_contig8955:9895..9996Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8955 9896..9996 -
1692278189.5350475-CDS-M-pyrifera_M_contig8955:9895..99961692278189.5350475-CDS-M-pyrifera_M_contig8955:9895..9996Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8955 9896..9996 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8955.20761.1

>prot_M-pyrifera_M_contig8955.20761.1 ID=prot_M-pyrifera_M_contig8955.20761.1|Name=mRNA_M-pyrifera_M_contig8955.20761.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
MISTRIENPEIALLAFAESEGNALLAAKRISEGRAYLNELFLAADIIHVT
VFLTALKKPGKRGAGALWREGVSS*
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mRNA from alignment at M-pyrifera_M_contig8955:9182..10491-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8955.20761.1 ID=mRNA_M-pyrifera_M_contig8955.20761.1|Name=mRNA_M-pyrifera_M_contig8955.20761.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1310bp|location=Sequence derived from alignment at M-pyrifera_M_contig8955:9182..10491- (Macrocystis pyrifera P11B4 male)
CTCGAAAGCCCAAGATTGAAGTTGTTCGAAGTGTCGGAAAGGTAAGAGGT
TCCCTCGAGAACATTCCAGATAGTTCGTAAACTCGGCACGTTTGTTAGTA
GACAGAACGCTACGTACGCCGGGCGGTCGGGGGCGGGGGCAGTTTGAGGC
ATTGGAAGCGGGCAATACTATCGATATCTTCTAACACATGGAAGCACGTA
CAAATAGAACCCAGATGCAATGCCAAAATATGAGTTGATGTTGAAGAACA
CTTGTATAATTGAAGCGCGGCACCCGAGCTATTAATGCCGTTACCGATAA
CAACCTGATACGGTGCAGTCTCCCCTCACGCACGATATGTTTTCTTCGCC
CACCTCTTGCTTCCATCCTAGCCCCCGAACGCGTGTTGCAACGCTTGGTG
GCATAGCGTTGCCTCCTTTTACTGTATGGACGTGCCTCCCGCTTTCCCTC
TCCCGCCGACCCGCCCCAACGTGCCCTATCTCCTGCCCACAGGTGATGAT
TTCGACGCGCATCGAAAACCCGGAAATAGCCCTACTGGCGTTTGCCGAGT
CTGAGGGGAATGCGCTCTTGGCTGCCAAACGAATATCCGAGGGCAGGTAT
GTTTTGTTGTGGACGTGTATTTGCCAGGCGCTCCTTTTGCACTTGTCGAC
TTGGTACGGTTGCATGTGAAATCGATACTTGTACGCTTTTGAATTTTGCA
GTATCTACGAGCACAGCTAGCTGCAAAGGGTATCTTACACAGCAGTACCT
GGTAGTGTAGCTAATCACTACGTGCTGTAAGAAAGCTCGTAGCGGGCCAT
GCATCGCGCCAGAAAGTCGATTATCTCATCTTGTAGTGCTCGCTACGTGG
CTTTGGCATCGCATGAACAAAAGGCTCGATGCTTCACACTTCCGGGTGTT
TATTCGATGGCTGCGCTACTGTACGTAACTCAAGAGCGGAAAACACCGAC
TCTCTTGCATATCTATCGATGGTAGATTCTATAATCTGTAGACAAGGACT
CCACGCACGTTCGTTGCCTTTTTGCTTGGTGCAGTTTGTTATTTCACCCT
CGGCAATGTCGTTCACGCACCTCGCCACCTGGTATATACTCTTCTCTTTT
TCGTTTTGATGACAGGGCGTATCTCAACGAGCTCTTCCTTGCCGCCGATA
TCATCCACGTGACAGTGTTTCTCACTGCTCTCAAGAAGCCGGGAAAGAGA
GGGGCTGGGGCTCTCTGGCGGGAAGGAGTCTCATCATGACAACCATAACC
AGATTATGAATTATCAGGAGTTATTAATAGCTCTGTTATGTATGCCTCGT
CTGGGCTGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8955:9182..10491-

>mRNA_M-pyrifera_M_contig8955.20761.1 ID=mRNA_M-pyrifera_M_contig8955.20761.1|Name=mRNA_M-pyrifera_M_contig8955.20761.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig8955:9182..10491- (Macrocystis pyrifera P11B4 male)
ATGATTTCGACGCGCATCGAAAACCCGGAAATAGCCCTACTGGCGTTTGC
CGAGTCTGAGGGGAATGCGCTCTTGGCTGCCAAACGAATATCCGAGGGCA
GATGATTTCGACGCGCATCGAAAACCCGGAAATAGCCCTACTGGCGTTTG
CCGAGTCTGAGGGGAATGCGCTCTTGGCTGCCAAACGAATATCCGAGGGC
AGGGCGTATCTCAACGAGCTCTTCCTTGCCGCCGATATCATCCACGTGAC
AGTGTTTCTCACTGCTCTCAAGAAGCCGGGAAAGAGAGGGGCTGGGGCTC
TCTGGCGGGAAGGAGTCTCATCATGAGGCGTATCTCAACGAGCTCTTCCT
TGCCGCCGATATCATCCACGTGACAGTGTTTCTCACTGCTCTCAAGAAGC
CGGGAAAGAGAGGGGCTGGGGCTCTCTGGCGGGAAGGAGTCTCATCATGA
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