mRNA_M-pyrifera_M_contig109935.2073.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109935.2073.1
Unique NamemRNA_M-pyrifera_M_contig109935.2073.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109935.2073.1 vs. uniprot
Match: R7DJB2_9BACT (GTPase Der n=1 Tax=Tannerella sp. CAG:51 TaxID=1262979 RepID=R7DJB2_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 4.570e-11
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   13 IAIVGRPNVGKSTLFNLLAVNGRAIVNSIAGTTRDRQEAQV 135
            +AIVGRPNVGKSTLFN L  + +AIVN +AGTTRDRQ  +V
Sbjct:    5 VAIVGRPNVGKSTLFNRLTKSRKAIVNEVAGTTRDRQYGKV 45
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BLAST of mRNA_M-pyrifera_M_contig109935.2073.1 vs. uniprot
Match: D8LH15_ECTSI (GTPase Der n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH15_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 4.990e-10
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    7 FSIAIVGRPNVGKSTLFNLLAVNGRAIVNSIAGTTRDRQEAQV 135
            F + IVGRPNVGKSTL+N LA   RAIV  IAGTTRDR+E+ V
Sbjct:  114 FRVVIVGRPNVGKSTLYNRLATRNRAIVTPIAGTTRDRKESTV 156
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BLAST of mRNA_M-pyrifera_M_contig109935.2073.1 vs. uniprot
Match: A0A2N6BBP3_9HYPH (GTPase Der (Fragment) n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2N6BBP3_9HYPH)

HSP 1 Score: 60.5 bits (145), Expect = 1.040e-9
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 MPFSIAIVGRPNVGKSTLFNLLAVNGRAIVNSIAGTTRDRQEAQV 135
            MP ++AI+GRPNVGKSTLFN LA    A+V+   G TRDR+EAQV
Sbjct:    1 MPMTVAIIGRPNVGKSTLFNRLAGRKLALVDDTPGVTRDRREAQV 45
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BLAST of mRNA_M-pyrifera_M_contig109935.2073.1 vs. uniprot
Match: A0A495VN57_9BACT (GTPase Der n=3 Tax=Bacteroidales TaxID=171549 RepID=A0A495VN57_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 1.740e-9
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   13 IAIVGRPNVGKSTLFNLLAVNGRAIVNSIAGTTRDRQEAQV 135
            +AIVGRPNVGKSTLFN L  + +AIVN +AGTTRDRQ  +V
Sbjct:    5 VAIVGRPNVGKSTLFNRLTKSRKAIVNEVAGTTRDRQYGKV 45
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BLAST of mRNA_M-pyrifera_M_contig109935.2073.1 vs. uniprot
Match: R5IRX3_9BACT (GTPase Der n=2 Tax=Bacteroidales TaxID=171549 RepID=R5IRX3_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 2.380e-9
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   13 IAIVGRPNVGKSTLFNLLAVNGRAIVNSIAGTTRDRQEAQV 135
            +AIVGRPNVGKSTLFN L  + +AIVN +AGTTRDRQ  +V
Sbjct:    5 VAIVGRPNVGKSTLFNRLTKSRQAIVNEVAGTTRDRQYGKV 45
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BLAST of mRNA_M-pyrifera_M_contig109935.2073.1 vs. uniprot
Match: A0A7C6BVP2_9BACT (GTPase Der n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7C6BVP2_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 2.380e-9
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   13 IAIVGRPNVGKSTLFNLLAVNGRAIVNSIAGTTRDRQ 123
            +AIVGRPNVGKSTLFN L    RAIVN +AGTTRDRQ
Sbjct:    5 VAIVGRPNVGKSTLFNRLTKTRRAIVNDVAGTTRDRQ 41
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BLAST of mRNA_M-pyrifera_M_contig109935.2073.1 vs. uniprot
Match: A0A524J4X6_9CHLR (GTP-binding protein (Fragment) n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A524J4X6_9CHLR)

HSP 1 Score: 55.5 bits (132), Expect = 4.170e-9
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   13 IAIVGRPNVGKSTLFNLLAVNGRAIVNSIAGTTRDRQEAQ 132
            +AIVGRPNVGKSTLFN +    RA+V+ IAGTTRDR  A+
Sbjct:    6 VAIVGRPNVGKSTLFNRIVGERRAVVSDIAGTTRDRVIAE 45
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BLAST of mRNA_M-pyrifera_M_contig109935.2073.1 vs. uniprot
Match: A0A7X7X022_9BACT (GTPase Der n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7X7X022_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 4.450e-9
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   13 IAIVGRPNVGKSTLFNLLAVNGRAIVNSIAGTTRDRQEAQ 132
            +AIVGRPNVGKSTLFN L  + RAIVN  AGTTRDRQ A+
Sbjct:    5 VAIVGRPNVGKSTLFNRLTESRRAIVNDEAGTTRDRQYAK 44
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BLAST of mRNA_M-pyrifera_M_contig109935.2073.1 vs. uniprot
Match: R6B6K9_9BACT (GTPase Der n=1 Tax=Prevotella sp. CAG:604 TaxID=1262932 RepID=R6B6K9_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 5.780e-9
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   13 IAIVGRPNVGKSTLFNLLAVNGRAIVNSIAGTTRDR 120
            +AIVGRPNVGKSTLFN L  + RAIV+  AGTTRDR
Sbjct:    5 VAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDR 40
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BLAST of mRNA_M-pyrifera_M_contig109935.2073.1 vs. uniprot
Match: A0A4Q5VRD8_9BACT (GTP-binding protein (Fragment) n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A4Q5VRD8_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 6.070e-9
Identity = 27/41 (65.85%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 MPFSIAIVGRPNVGKSTLFNLLAVNGRAIVNSIAGTTRDRQ 123
            M F++AIVGRPNVGKST FN L    +AIV  I G TRDRQ
Sbjct:    1 MGFTVAIVGRPNVGKSTFFNRLLEQRKAIVEDIPGVTRDRQ 41
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109935.2073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7DJB2_9BACT4.570e-1170.73GTPase Der n=1 Tax=Tannerella sp. CAG:51 TaxID=126... [more]
D8LH15_ECTSI4.990e-1069.77GTPase Der n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
A0A2N6BBP3_9HYPH1.040e-964.44GTPase Der (Fragment) n=1 Tax=Hyphomicrobiales bac... [more]
A0A495VN57_9BACT1.740e-970.73GTPase Der n=3 Tax=Bacteroidales TaxID=171549 RepI... [more]
R5IRX3_9BACT2.380e-970.73GTPase Der n=2 Tax=Bacteroidales TaxID=171549 RepI... [more]
A0A7C6BVP2_9BACT2.380e-978.38GTPase Der n=1 Tax=Bacteroidales bacterium TaxID=2... [more]
A0A524J4X6_9CHLR4.170e-967.50GTP-binding protein (Fragment) n=1 Tax=Anaerolinea... [more]
A0A7X7X022_9BACT4.450e-975.00GTPase Der n=1 Tax=Bacteroidales bacterium TaxID=2... [more]
R6B6K9_9BACT5.780e-975.00GTPase Der n=1 Tax=Prevotella sp. CAG:604 TaxID=12... [more]
A0A4Q5VRD8_9BACT6.070e-965.85GTP-binding protein (Fragment) n=1 Tax=Chitinophag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109935contigM-pyrifera_M_contig109935:105..239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue4.8e-08
Seed eggNOG ortholog2880.D8LH15
KEGG koko:K03977
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.GTP binding
EggNOG OGsCOG0486@1,KOG1191@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size135
Cds size135
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.7979674-CDS-M-pyrifera_M_contig109935:104..2391622815609.7979674-CDS-M-pyrifera_M_contig109935:104..239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109935 105..239 -
1692277486.1005414-CDS-M-pyrifera_M_contig109935:104..2391692277486.1005414-CDS-M-pyrifera_M_contig109935:104..239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109935 105..239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109935.2073.1prot_M-pyrifera_M_contig109935.2073.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109935 105..239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109935.2073.1

>prot_M-pyrifera_M_contig109935.2073.1 ID=prot_M-pyrifera_M_contig109935.2073.1|Name=mRNA_M-pyrifera_M_contig109935.2073.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=45bp
MPFSIAIVGRPNVGKSTLFNLLAVNGRAIVNSIAGTTRDRQEAQV
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mRNA from alignment at M-pyrifera_M_contig109935:105..239-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109935.2073.1 ID=mRNA_M-pyrifera_M_contig109935.2073.1|Name=mRNA_M-pyrifera_M_contig109935.2073.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=135bp|location=Sequence derived from alignment at M-pyrifera_M_contig109935:105..239- (Macrocystis pyrifera P11B4 male)
ATGCCGTTCTCCATCGCCATCGTGGGCAGACCCAACGTGGGAAAGAGTAC
CTTGTTCAATCTGCTCGCTGTCAACGGTCGGGCTATTGTCAACTCCATTG
CAGGGACGACGCGCGATCGGCAAGAGGCACAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109935:105..239-

>mRNA_M-pyrifera_M_contig109935.2073.1 ID=mRNA_M-pyrifera_M_contig109935.2073.1|Name=mRNA_M-pyrifera_M_contig109935.2073.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig109935:105..239- (Macrocystis pyrifera P11B4 male)
ATGCCGTTCTCCATCGCCATCGTGGGCAGACCCAACGTGGGAAAGAGTAC
CTTGTTCAATCTGCTCGCTGTCAACGGTCGGGCTATTGTCAACTCCATTG
CAGGGACGACGCGCGATCGGCAAGAGGCACAGGTGATGCCGTTCTCCATC
GCCATCGTGGGCAGACCCAACGTGGGAAAGAGTACCTTGTTCAATCTGCT
CGCTGTCAACGGTCGGGCTATTGTCAACTCCATTGCAGGGACGACGCGCG
ATCGGCAAGAGGCACAGGTG
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