mRNA_M-pyrifera_M_contig8914.20668.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8914.20668.1
Unique NamemRNA_M-pyrifera_M_contig8914.20668.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig8914.20668.1 vs. uniprot
Match: D7FPX2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPX2_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 1.610e-61
Identity = 104/171 (60.82%), Postives = 134/171 (78.36%), Query Frame = 1
Query:    1 EKKNEQVIYEDAISVMRGGDYDASFTLLEEAVSLAGADSRRGGEFKLWAVQALQGVGRNKQAVTLLESLKAHRDLDVRKVSQELLYIAKAPQLKLGEDDFVQFPDVSHLSETFDKSKWKEIGKPKVVPWKKEKKDDLGYYVGSDTGQAPGNDPVMLVACVGAILALSFVFL 513
            +++  ++ YE+AI++MR  D DAS  LL++AV LAGADSRRGGEFKLWA QALQGV RN QAV +L+SLK+HRD DVRKVS ELLYIA+APQL L  +DFV FPD S +++ +DK   K++GKPK+ PWKK +K++  +YVG DTG  PGNDPVM +A +  IL LS++FL
Sbjct:  123 DQEKAEIFYEEAIALMRRRDCDASVALLDKAVDLAGADSRRGGEFKLWAAQALQGVNRNNQAVEVLKSLKSHRDFDVRKVSAELLYIAQAPQLALNGEDFVDFPDTSGITDDYDK---KDLGKPKIAPWKKSEKEEDMFYVGEDTGVRPGNDPVMFLAAIVGILGLSYMFL 290          
BLAST of mRNA_M-pyrifera_M_contig8914.20668.1 vs. uniprot
Match: A0A835ZHV4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHV4_9STRA)

HSP 1 Score: 121 bits (304), Expect = 6.600e-28
Identity = 77/177 (43.50%), Postives = 103/177 (58.19%), Query Frame = 1
Query:    1 EKKNEQVIYEDAISVMRGGDYDASFTLLEEAVSLAGADSRRGGEFKLWAVQALQGVGRNKQAVTLLESLKAHRDLDVRKVSQELLYIAKAPQLKLGEDDFVQFPD--VSHLSETFDKSKWKEIGKPKVVPWKK----EKKDDLGYYVGSDTGQAPGNDPVMLVACVGAILALSFVFL 513
            +++  +V YE+AI  M  G+YD +  LL  AV+  G DSRRGGEFKLW  QALQGV  N  AVTLL S++ H D DVR V++ELLYIA AP+L L   D V F     + + + FD S+++E+ +   VP+K     EKK     YV  +    P  +P  L   V  IL +S + L
Sbjct:  115 DREKGEVFYEEAIIYMGKGEYDTAQELLRRAVAFVGEDSRRGGEFKLWLAQALQGVLDNDGAVTLLRSMRTHPDRDVRTVAKELLYIATAPKLDLEAADLVTFGAGLTAGIDDAFDASRYRELKRGPKVPYKDGQLLEKKP---AYVVREYQPPPEANPAFLAVAVAVILGVSALVL 288          
BLAST of mRNA_M-pyrifera_M_contig8914.20668.1 vs. uniprot
Match: A0A6V1UNI6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UNI6_HETAK)

HSP 1 Score: 105 bits (261), Expect = 9.460e-22
Identity = 54/135 (40.00%), Postives = 87/135 (64.44%), Query Frame = 1
Query:   16 QVIYEDAISVMRGGDYDASFTLLEEAVSLAGADSRRGGEFKLWAVQALQGVGRNKQAVTLLESLKAHRDLDVRKVSQELLYIAKAPQLKLGEDDFVQFPDVSHLSETFDKSKWKEIGKPKVVPWKKEKKDDLGYY 420
            ++ +E+A+  M  G Y  S  L+E+AV  AG +S RGG F+LW  QA+   GR + A   L++L  H D ++R+V+ ELLYI +AP++KL +DDFV+FPD+S ++E FD+  +++ G+     +   K+ +  YY
Sbjct:  143 EIFFEEAVKAMNRGRYAESVALIEQAVRYAGRESTRGGGFRLWLAQAVYAQGRREGAREGLKALGTHPDSNIRRVAAELLYIYEAPEIKLTKDDFVEFPDMSTITEKFDRKAFRQ-GEMSKGSYSNYKEKEPVYY 276          
BLAST of mRNA_M-pyrifera_M_contig8914.20668.1 vs. uniprot
Match: A0A7S4B5R0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B5R0_CHRCT)

HSP 1 Score: 91.7 bits (226), Expect = 1.470e-17
Identity = 43/113 (38.05%), Postives = 74/113 (65.49%), Query Frame = 1
Query:    7 KNEQVIYEDAISVMRGGDYDASFTLLEEAVSLA--GADSRRGGEFKLWAVQALQGVGRNKQAVTLLESLKAHRDLDVRKVSQELLYIAKAPQLKLGEDDFVQFPDVSHLSETF 339
            ++ Q+ ++D +S+M+ G+Y  + +   +A++    G+ SR GG++ +W  QALQ  G  ++AV LL+   AH D DVRK++  +LYI +AP+LKLGE++FV+ P +   +  F
Sbjct:   58 EDHQIAFKDGVSLMQSGNYKQASSAFTKAITSVPGGSGSRLGGQYSIWLAQALQAGGEKQKAVGLLQQCNAHPDRDVRKIADSVLYIMQAPELKLGEENFVKIPKLDETAMEF 170          
BLAST of mRNA_M-pyrifera_M_contig8914.20668.1 vs. uniprot
Match: A0A7S4B5I1_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B5I1_CHRCT)

HSP 1 Score: 91.7 bits (226), Expect = 9.100e-17
Identity = 43/113 (38.05%), Postives = 74/113 (65.49%), Query Frame = 1
Query:    7 KNEQVIYEDAISVMRGGDYDASFTLLEEAVSLA--GADSRRGGEFKLWAVQALQGVGRNKQAVTLLESLKAHRDLDVRKVSQELLYIAKAPQLKLGEDDFVQFPDVSHLSETF 339
            ++ Q+ ++D +S+M+ G+Y  + +   +A++    G+ SR GG++ +W  QALQ  G  ++AV LL+   AH D DVRK++  +LYI +AP+LKLGE++FV+ P +   +  F
Sbjct:  176 EDHQIAFKDGVSLMQSGNYKQASSAFTKAITSVPGGSGSRLGGQYSIWLAQALQAGGEKQKAVGLLQQCNAHPDRDVRKIADSVLYIMQAPELKLGEENFVKIPKLDETAMEF 288          
BLAST of mRNA_M-pyrifera_M_contig8914.20668.1 vs. uniprot
Match: R1EFV5_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EFV5_EMIHU)

HSP 1 Score: 87.8 bits (216), Expect = 7.060e-16
Identity = 42/97 (43.30%), Postives = 65/97 (67.01%), Query Frame = 1
Query:   22 IYEDAISVMRGGDYDASFTLLEEAVSLA--GADSRRGGEFKLWAVQALQGVGRNKQAVTLLESLKAHRDLDVRKVSQELLYIAKAPQLKLGEDDFVQ 306
            I+   +  M+GG Y  +     +AV+ A  G   R GG++ +W  QALQ  GR K+AV LL++ ++H D DVRK+S+ +LY+ +AP+LKLGE++FV+
Sbjct:  150 IFAAGVKAMKGGYYKDAVRYFTQAVAAAPGGLTGREGGQYSVWLAQALQAAGRTKEAVGLLQTCESHPDSDVRKISESVLYVLRAPELKLGEENFVR 246          
BLAST of mRNA_M-pyrifera_M_contig8914.20668.1 vs. uniprot
Match: A0A7S2ZV28_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZV28_9RHOD)

HSP 1 Score: 85.9 bits (211), Expect = 4.110e-15
Identity = 55/160 (34.38%), Postives = 85/160 (53.12%), Query Frame = 1
Query:   22 IYEDAISVMRGGDYDASFTLLEEAVSLAGADSRRGGEFKLWAVQALQGVGRNKQAVTLLESLKAHRDLDVRKVSQELLYIAKAPQLKLGEDDFVQFPDVSHLSETFDKSKWKEIGKPKVVPWKKEKKDDLGYYVGSDTGQAPGNDPVMLVACVGAILALS 501
            I+   + +   G Y  +   L  A  LAG +SR GG+++LW  QAL   G  K+A+  L++LK+HRD DVRKV+ E+L+I  AP L LG+++FV   +     E   K+  +    P  V  K  +K  L +++      AP  D  +  A V A++ +S
Sbjct:  129 IFRVGLDLFERGRYKEATKELTAACLLAGVNSREGGQYQLWLGQALDAAGEKKKAIACLQTLKSHRDSDVRKVADEVLFIITAPPLNLGKENFVSI-ETGKSYEVLQKNGRRRSSIPTAVIPKGPEKYSLEWFLEKKPEAAP--DDNLDKAAVAAVVLVS 285          
BLAST of mRNA_M-pyrifera_M_contig8914.20668.1 vs. uniprot
Match: A0A7S3ZIY9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZIY9_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.090e-13
Identity = 45/98 (45.92%), Postives = 57/98 (58.16%), Query Frame = 1
Query:   16 QVIYEDAISVMRGGDYDASFTLLEEAVSLAGADSRRGGEFKLWAVQALQGVGRNKQAVTLLESLKAHRDLDVRKVSQELLYIAKAPQLKLGEDDFVQF 309
            ++ Y  A+  M  G YD        A   AG  SRRGG+ +LW  QAL   GR   A+ LL +LKAH D DV KVS+EL++I KAP+L+L E   V F
Sbjct:   97 EIFYASAVEKMNKGFYDXXXXXXXRASYFAGVASRRGGQMQLWLGQALYAAGRRGDALKLLLALKAHPDRDVAKVSKELVFILKAPELQLDESSRVGF 194          
BLAST of mRNA_M-pyrifera_M_contig8914.20668.1 vs. uniprot
Match: K9YH55_HALP7 (Uncharacterized protein n=1 Tax=Halothece sp. (strain PCC 7418) TaxID=65093 RepID=K9YH55_HALP7)

HSP 1 Score: 78.6 bits (192), Expect = 1.440e-13
Identity = 55/165 (33.33%), Postives = 83/165 (50.30%), Query Frame = 1
Query:    1 EKKNEQVIYEDAISVMRGGDYDASFTLLEEAVSLAGADSRRGGEFKLWAVQALQGVGRNKQAVTLLESLKAHRDLDVRKVSQELLYIAKAPQLKLGEDDFVQFPDVSHLSETFDK-SKWKEIGKPKVVPWKKEKKDDLGYYVGSDTGQAPGNDPVMLVACVGAIL 492
            +K+  Q  Y+     +  G Y  S   LE A  L    S+ GGE ++W V A Q  G+ + A+ L + L  H   ++RK S+ +LYI KAP LK  ++   + PD+S LSE   K S++K  G+ K  P K  + D +     S+  +   N   + VA +G IL
Sbjct:    3 QKEEFQATYQRGKLALERGRYKESIEELERAKKLINPQSKLGGEVRIWLVSAYQAAGQIESAIALCQDLAKHPSGEIRKQSERILYILKAPALKRPDEWLTKIPDLSKLSEEDSKTSQYKPAGRVKPRPRKLPEPDPIDP---SEINRKDNN--FIWVALIGIIL 162          
BLAST of mRNA_M-pyrifera_M_contig8914.20668.1 vs. uniprot
Match: A0A7J7ICZ3_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ICZ3_9RHOD)

HSP 1 Score: 81.6 bits (200), Expect = 2.240e-13
Identity = 48/134 (35.82%), Postives = 75/134 (55.97%), Query Frame = 1
Query:    4 KKNEQVIYEDAISVMRGGDYDASFTLLEEAVSLAGADSRRGGEFKLWAVQALQGVGRNKQAVTLLESLKAHRDLDVRKVSQELLYIAKAPQLKLGEDDFVQFPDVSHLSETFDKSKWKEIGKPKVVP-WKKEKK 402
            +K  +  +   +  +  G Y  +  L+  A +LAG  +R GGE+ LW  QAL   G+N +A  +L  L  HRD DVR+V++ LLYI +AP+L+LG + FVQ  DV  + +          G+ + +P WKK ++
Sbjct:  159 QKQAENAFAQGVQELNAGQYAKATDLIFRASALAGHQTRLGGEYLLWLAQALDAQGKNTRAQEVLRRLHYHRDNDVRRVAENLLYILQAPRLRLGPESFVQI-DVEAICDP---------GRARDIPGWKKRQR 282          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8914.20668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FPX2_ECTSI1.610e-6160.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZHV4_9STRA6.600e-2843.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1UNI6_HETAK9.460e-2240.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4B5R0_CHRCT1.470e-1738.05Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4B5I1_CHRCT9.100e-1738.05Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
R1EFV5_EMIHU7.060e-1643.30Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S2ZV28_9RHOD4.110e-1534.38Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3ZIY9_9STRA1.090e-1345.92Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
K9YH55_HALP71.440e-1333.33Uncharacterized protein n=1 Tax=Halothece sp. (str... [more]
A0A7J7ICZ3_9RHOD2.240e-1335.82Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8914contigM-pyrifera_M_contig8914:5860..8760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score82.0
Seed ortholog evalue2.7e-13
Seed eggNOG ortholog118168.MC7420_550
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SPTR Alr1246 protein
EggNOG OGs1G6IQ@1117,1HBJ8@1150,COG0457@1,COG0457@2
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_008350.1
COG Functional cat.S
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
Exons3
Model size1271
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8914.20668.1prot_M-pyrifera_M_contig8914.20668.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8914 6612..8715 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816801.7670815-UTR-M-pyrifera_M_contig8914:5859..66111622816801.7670815-UTR-M-pyrifera_M_contig8914:5859..6611Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8914 5860..6611 -
1692278187.0109682-UTR-M-pyrifera_M_contig8914:5859..66111692278187.0109682-UTR-M-pyrifera_M_contig8914:5859..6611Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8914 5860..6611 -
1622816801.8159392-UTR-M-pyrifera_M_contig8914:8715..87601622816801.8159392-UTR-M-pyrifera_M_contig8914:8715..8760Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8914 8716..8760 -
1692278187.0731802-UTR-M-pyrifera_M_contig8914:8715..87601692278187.0731802-UTR-M-pyrifera_M_contig8914:8715..8760Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8914 8716..8760 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816801.7780852-CDS-M-pyrifera_M_contig8914:6611..67731622816801.7780852-CDS-M-pyrifera_M_contig8914:6611..6773Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8914 6612..6773 -
1692278187.0239162-CDS-M-pyrifera_M_contig8914:6611..67731692278187.0239162-CDS-M-pyrifera_M_contig8914:6611..6773Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8914 6612..6773 -
1622816801.7891393-CDS-M-pyrifera_M_contig8914:8180..83001622816801.7891393-CDS-M-pyrifera_M_contig8914:8180..8300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8914 8181..8300 -
1692278187.0349905-CDS-M-pyrifera_M_contig8914:8180..83001692278187.0349905-CDS-M-pyrifera_M_contig8914:8180..8300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8914 8181..8300 -
1622816801.8029833-CDS-M-pyrifera_M_contig8914:8523..87151622816801.8029833-CDS-M-pyrifera_M_contig8914:8523..8715Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8914 8524..8715 -
1692278187.0537667-CDS-M-pyrifera_M_contig8914:8523..87151692278187.0537667-CDS-M-pyrifera_M_contig8914:8523..8715Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8914 8524..8715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8914.20668.1

>prot_M-pyrifera_M_contig8914.20668.1 ID=prot_M-pyrifera_M_contig8914.20668.1|Name=mRNA_M-pyrifera_M_contig8914.20668.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp
MRGGDYDASFTLLEEAVSLAGADSRRGGEFKLWAVQALQGVGRNKQAVTL
LESLKAHRDLDVRKVSQELLYIAKAPQLKLGEDDFVQFPDVSHLSETFDK
SKWKEIGKPKVVPWKKEKKDDLGYYVGSDTGQAPGNDPVMLVACVGAILA
LSFVFLG*
back to top

mRNA from alignment at M-pyrifera_M_contig8914:5860..8760-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8914.20668.1 ID=mRNA_M-pyrifera_M_contig8914.20668.1|Name=mRNA_M-pyrifera_M_contig8914.20668.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2901bp|location=Sequence derived from alignment at M-pyrifera_M_contig8914:5860..8760- (Macrocystis pyrifera P11B4 male)
GAAAAAAAAAACGAGCAGGTGATCTACGAGGACGCCATCTCCGTCATGCG GGGGGGCGACTACGACGCGTCGTTCACCCTTCTCGAGGAGGCGGTGTCTC TGGCGGGGGCAGACTCGCGGAGGGGTGGCGAGTTCAAGTTGTGGGCAGTG CAGGCGTTGCAGGGCGTGGGGAGGAACAAGCAGGCGGTGACACTGCTCGA AAGCCTCAAGGCTCACCGAGACTTGGACGTCCGAAAGGTGGAGTACAAGG ACTTGTCCGGCTGGTGGCGGGCTGTTATCCCCTGTTTCGTCGAGAGCACG AGGGCGGGGAGTTGAAGATTCTCAAAAACGTGAAAAACATCTGAGAGGAT TTTCTAACATTTCTTTGGGATGTCAACAAGAATCACCTTTGTACTGGTTT TCGCTAACATGTCCGGGGCTTGCACCGCTTCTGCTCGTGTCGATCGCGAT CGTATGCAAGGTCAGCCAAGAGCTGCTTTACATCGCCAAAGCCCCTCAGC TAAAGCTCGGCGAAGATGACTTCGTCCAATTTCCTGACGTTTCTCACCTG TCGGAAACTTTCGACAAGTCCAAGTGGAAGGTAAGGCGGGTGTGGTGTAC AATACTATCAATTACTGCTGTATATACCGGGACCGATCCATCTTGAGGGG TGGACAGACCTTGATAGTAGATCTTTATGGGGGTTTTGTGTTGGACGCCT GAAGCCGACCCTCCAACCCTAACCCGAACCCGAACCCGAACCCGAACCCT ATGCCAGTGGTCAGTGCTGGGATGTTGTGCTTGTTAAGACTCTAGGTTGG CTCGGCCGGCGTGGATGCTGAGCTTGAAAAGACTCTAGGTTGACCGGGGA TGCTGGGGCGGGGAGATACCAGAAAGTTGATTAACCCGNNNNNNNNNNAA CATACACCTAGCCAATCAGAGTGCCTCATTAGCTACCCCAGGAAGATCTA CTATCAAGGTTTGTCCACTACTGTCCATCTTTGGGAGGGTCCATCGCTTT TGGTGCATCCATTGTATGTCACGCCGCAGGATGCCCTCGCGCAGGTTGGC TCGATGCGCAACATTCCGCATGCAGCAACTTGCCGTCTGCGGGCTTAGAC GCCTGGATAGAGGCATAAGTAGCCCATGGCCTACGGTGCTGGCACGGTGG CCTCTGGGAACAGACGCGCGAAAATCGCGTGACGACGTGCCTACCATAGC TCCACAGGGCGATGGCCCTTGTCGCCAATAAGCGTTTGACAGGAGACTAC CGATAGACACCTTGGCTGACCGCCCCCTACACTAACCTACAGTAGTACAT AAGGGCCAAAAGAGCCTGGACGTGCCCAAAGTGTCTTATCAATAGCATTA TTGCTCATCGGAGGCGACACCGCCCCCACGCCTTTTTCCTTGTCGCAGAC ACAACTTGATCTGGCCGCATTCAGCCGTAGGATCTTCGATTTCGTTCAGG CCGCATTCAGCCGTAGGATCTCTGATTTCCTTCGTTTTTTTACTTGGCGT GAGAGTTGTTGTTGTAGTTATGTACAAAGGAATCTCACACATACCAGGTA TATATATGCCCATTCATAGAGTCCAGTTCGATCGCCCTGTACCTCTAACA CGCCCCCGCCACTGGTTGGCACATGCACAAACGTACGATACTAATGCCAA AAAAACAATTCCGTAGGACATAACATCACGACTATTAGAAGGGAATATGC TTTATACTACAGTAGTCGTAGTCAGAATCAAATGTGGCTATTAATAGTGA AAAAATAGAAAAAAAAAAAGAATATTTTGTTTTTTTCGAGCCCATCGTGT GTTTTGATTACTATCGCCTTCCGTAATACCGGAATTCCAGACAGTAATTA ATTTCCACCTTCGAGGGAGACGGTGTGTAACGTAGAATGTACACGGGATT TGTTCTGCTCACCTCCTGGCTTGCTCTTCACCCCCCCTCCCCCGCCCCCC CCACCACTCACCCGCTCCTACGTAATGCACCTGGTAGGAGATCGGGAAGC CTAAAGTGGTTCCTTGGAAGAAAGAGAAGAAAGATGACCTGGGTTACTAC GTGGGGAGTGACACTGGCCAAGCACCGGGTAACGACCCCGTTATGCTCGT GGCGTGCGTGGGCGCCATTTTGGCCCTGTCGTTTGTCTTCTTGGGTTGAC CGACTTTGATTGATGTCTTCGATATTTCGGAGATCGACCGTTTCGGAGAA TCGAAAGCAGGTAATCTCTTCGAGGGGTATACTTTTTGGGGGGGGATTCG AAAGATCGTACGGTGGGGACAATAACCCCCACCTCAACCTTTTCTGCCCT GCCTCATTGGCGTCAGACTTGAGTATGCCTCCACTCCGACTGACCCGGTG CGGTGTGTTTTGGCGTCGTATCGACAAGCCCAGTTGAAGGGGAGCAAAGG CTATTTTTTTCTTGTGTTTTACTTTTCTGTTTGAACTACCACCAAGCGGG GTCCCGTCATTGCATTCCTGTTAGTGTTCCCAACGCAGGTAATTGTTGTA TATACGAAGTACGAGCGATGCACCGAGTCCATGCGCAGGCCACTGTGATG CGAGCGAATACACGGAGTCCATAAGGCAGCCCGGGCTTGGATGGGTTGCT CGGGCCTAGGATTTGATTGTGCTCACACCAGGACGACATTGCTTGCCGCC CGGCACAGCAAGCGATGTTGTCATGTGGACAAAGAGCCCTTCGGCGTTAT TTTGTTAGGCCGCAAGTTTTAAGGTTATCGAAACGAGCATAACAGGTGTA GAATGGACCACCACATCACTGTAGGACAAGAAGTCCAACTTCTCATGTGC GGAGAAGCAAGCGTGAACAAAACATGGACCGTTTAGGCAAAACAGACCCT TAGGAAAAGAGCTGTTTCTCTCGCATGTGGTTGGTTGTGCGTTCTCACCG C
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8914:5860..8760-

>mRNA_M-pyrifera_M_contig8914.20668.1 ID=mRNA_M-pyrifera_M_contig8914.20668.1|Name=mRNA_M-pyrifera_M_contig8914.20668.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig8914:5860..8760- (Macrocystis pyrifera P11B4 male)
ATGCGGGGGGGCGACTACGACGCGTCGTTCACCCTTCTCGAGGAGGCGGT
GTCTCTGGCGGGGGCAGACTCGCGGAGGGGTGGCGAGTTCAAGTTGTGGG
CAGTGCAGGCGTTGCAGGGCGTGGGGAGGAACAAGCAGGCGGTGACACTG
CTCGAAAGCCTCAAGGCTCACCGAGACTTGGACGTCCGAAAGATGCGGGG
GGGCGACTACGACGCGTCGTTCACCCTTCTCGAGGAGGCGGTGTCTCTGG
CGGGGGCAGACTCGCGGAGGGGTGGCGAGTTCAAGTTGTGGGCAGTGCAG
GCGTTGCAGGGCGTGGGGAGGAACAAGCAGGCGGTGACACTGCTCGAAAG
CCTCAAGGCTCACCGAGACTTGGACGTCCGAAAGGTCAGCCAAGAGCTGC
TTTACATCGCCAAAGCCCCTCAGCTAAAGCTCGGCGAAGATGACTTCGTC
CAATTTCCTGACGTTTCTCACCTGTCGGAAACTTTCGACAAGTCCAAGTG
GAAGGTCAGCCAAGAGCTGCTTTACATCGCCAAAGCCCCTCAGCTAAAGC
TCGGCGAAGATGACTTCGTCCAATTTCCTGACGTTTCTCACCTGTCGGAA
ACTTTCGACAAGTCCAAGTGGAAGGAGATCGGGAAGCCTAAAGTGGTTCC
TTGGAAGAAAGAGAAGAAAGATGACCTGGGTTACTACGTGGGGAGTGACA
CTGGCCAAGCACCGGGTAACGACCCCGTTATGCTCGTGGCGTGCGTGGGC
GCCATTTTGGCCCTGTCGTTTGTCTTCTTGGGTTGAGAGATCGGGAAGCC
TAAAGTGGTTCCTTGGAAGAAAGAGAAGAAAGATGACCTGGGTTACTACG
TGGGGAGTGACACTGGCCAAGCACCGGGTAACGACCCCGTTATGCTCGTG
GCGTGCGTGGGCGCCATTTTGGCCCTGTCGTTTGTCTTCTTGGGTTGA
back to top