mRNA_M-pyrifera_M_contig88838.20616.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88838.20616.1
Unique NamemRNA_M-pyrifera_M_contig88838.20616.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88838.20616.1 vs. uniprot
Match: A0A847H0H5_9BACT (YfhO family protein n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847H0H5_9BACT)

HSP 1 Score: 207 bits (526), Expect = 1.810e-57
Identity = 123/289 (42.56%), Postives = 158/289 (54.67%), Query Frame = 1
Query:    1 FSGSVLFQYCNVVFLVGAAWLPAALWAARRLIHRQTLKYAALLGTVLALMTLGGDPQMAYHAGMIIAGYA--IFQSFNK--------------------SPTAKPHSF-RNRFALLAAAVTIAGVLCAVQWIPAVELTRLSSRGMPEYPRNLYQLVGSQFSAESNVFTADNPEESDGKYAALLGSTTTGDAHQQQTYRFSVGPWHLAEFVFPNFSGELFPTNQRWIQAIPAEGRTWVASLYMGLLPALLALACWGT-GADRQTRCLRWFTLFCLLAAGGHYALGWIARE 795
            F GSVLFQYCN+V+LVGAAWLP ALWAA R++  + L  A LL  VLALM LGGDPQMAYHAG++ + YA  ++++  +                    S   +P  F   R  LL+ A      L A+Q +P+ E +  S R     PR++Y++ G  + A   +   D P  S      L G    G  H +  Y FSVGPW LAE  +PN SG LFP ++RW   IP EGR W  SLY+GLLP LL LA W   GA    R L W +L   LA+ G Y +GW+  +
Sbjct:  140 FGGSVLFQYCNIVYLVGAAWLPLALWAADRMLVERRLGPAWLLAAVLALMVLGGDPQMAYHAGLLASAYAWLLWRAERRAGHAAACGVRRAAGQAGLAVSAAIRPAHFGHRRLTLLSVAAVAXXALAAIQVLPSSEWSYQSERAAYRSPRSVYEIFG--YLAREPI---DGPRSS--IVQGLFGVPDRG-MHHEHIYEFSVGPWRLAELAWPNVSGPLFPVHRRWASGIPGEGRIWSPSLYLGLLPLLLGLAAWRLRGAAAHVRWLSWASLLATLASFGGYGVGWLLYQ 420          
BLAST of mRNA_M-pyrifera_M_contig88838.20616.1 vs. uniprot
Match: A0A2E8B0U9_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8B0U9_9PLAN)

HSP 1 Score: 198 bits (504), Expect = 2.120e-54
Identity = 121/287 (42.16%), Postives = 161/287 (56.10%), Query Frame = 1
Query:    4 SGSVLFQYCNVVFLVGAAWLPAALWAARRLIHRQTLKYAALLGTVLALMTLGGDPQMAYHAGMIIAGYAI------FQSFNKSPTAKPHSFRN--------RFALLAAAVTIAGVLCAVQWIPAVELTRLSSRGMPEYPRNLYQLVGSQFSAESNVFTADNPEESDGKYAALLGSTTTGDAHQQQTYRFSVGPWHLAEFVFPNFSGELFPTNQRWIQAIPAEGRTWVASLYMGLLPALLALACWGTGADRQTRCLRW-FTLFCLLAAG--GHYALGWIAREVVNLVG 813
            SGSVLFQYCNVVFLVGA+WLP A  A  R+    +   A LLG+VLA+MTLGGDPQ+AYHAG     YA+      +QS +  P + P  +R+        R  L+ AA  + G+L AVQ +P+    R S R   E PR+++++ G        V T     E     + L+G T +G  H + TYRFS  PW   E V+PN  G  FP ++RW   IPAEGR W  SLYMGLLP L+A   W     R++   +W + L  + AAG  G Y +GW+ +E+  + G
Sbjct:  126 SGSVLFQYCNVVFLVGASWLPFAFLAIERMFRCNSAGAAVLLGSVLAMMTLGGDPQIAYHAGFAAVVYALILLHRDWQSRHFPPGSMPSFWRSQELIICCRRCGLIIAAGLMGGLLAAVQILPSWFWVRQSDREFCEGPRSVWEIPGHVVGRHDTVSTGTLTHEI---LSGLVGPTESG-THDEFTYRFSNAPWRFMELVWPNVGGRQFPIHRRWFNLIPAEGRVWTPSLYMGLLPLLMAGCTWRK--RRRSPGNQWLWALVAIFAAGSLGRYGIGWLLQELSYVSG 406          
BLAST of mRNA_M-pyrifera_M_contig88838.20616.1 vs. uniprot
Match: A0A2E0B3D1_9BACT (Uncharacterized protein n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A2E0B3D1_9BACT)

HSP 1 Score: 192 bits (487), Expect = 2.740e-52
Identity = 114/276 (41.30%), Postives = 146/276 (52.90%), Query Frame = 1
Query:    4 SGSVLFQYCNVVFLVGAAWLPAALWAARRLIHRQTLKYAALLGTVLALMTLGGDPQMAYHAGMIIAGYAIFQSFN--------KSPTAKPHSFRNRFALLAAAVTIAGVLCAVQWIPAVELTRLSSRGMPEYPRNLYQLVGSQFSAESNVFTADNPEESDGKYAALLGSTTTGDAHQQQTYRFSVGPWHLAEFVFPNFSGELFPTNQRWIQAIPAEGRTWVASLYMGLLPALLALAC---WGTGADRQTRCLRWFTLFCLLAAGGHYALGWIAREV 798
            SGSVLFQYCNVVFLVGAAWLP AL     ++ R +       G VLALM LGGDPQMAY A ++  G+ + +S          K     P  F     +   ++ +A  L A Q +PA +  R S R   E PR +Y+ + +  S                  A+L      G +HQ   Y+FSVGPW L+EF++PN SG LFPT+QRW + IPAEGR W  SLYMG +P LLA+     W      + R L W  L   LA+ G Y +GW+  EV
Sbjct:  132 SGSVLFQYCNVVFLVGAAWLPLALQTGDMMLRRSSWPAVLGFGVVLALMNLGGDPQMAYQAVLLTGGWYLVRSVRSWWRMRARKPERRLPLRFVKLGGMFFGSLVLAFGLSACQVLPAAKWARTSQRAAYENPRTIYEWMETSPSGSG--------------VASLFQKAPVG-SHQHAVYQFSVGPWRLSEFLWPNISGRLFPTDQRWTRVIPAEGRIWSPSLYMGTIPFLLAILSIRFWR--GSLRVRYLSWVILLATLASFGGYGVGWLVEEV 390          
BLAST of mRNA_M-pyrifera_M_contig88838.20616.1 vs. uniprot
Match: A0A2G2L0X8_9BACT (Uncharacterized protein n=1 Tax=Blastopirellula sp. TaxID=2024826 RepID=A0A2G2L0X8_9BACT)

HSP 1 Score: 190 bits (482), Expect = 2.030e-51
Identity = 107/280 (38.21%), Postives = 153/280 (54.64%), Query Frame = 1
Query:    1 FSGSVLFQYCNVVFLVGAAWLPAALWAARRLIHRQTLKYAALLGTVLALMTLGGDPQMAYHAGMIIAGYAIFQSFNKS-----------PTAKPHSFRNRFALLAAAVTIAGVLCAVQWIPAVELTRLSSRGMPEYPRNLYQLVGSQFSAESNVFTADNPEESDGKYAALLGSTTTGDAHQQQTYRFSVGPWHLAEFVFPNFSGELFPTNQRWIQAIPAEGRTWVASLYMGLLPALLALACWGTGADRQT---RCLRWFTLFCLLAAGGHYALGWIAREV 798
            F G VL Q+ NVVFL+G AWLP AL  A+R+++    K A     VLA+M LGGDPQMAYH  ++   Y +  +F KS            T  P+ F+ R  LL  ++ +A  L A+Q  P++  ++ S+R   + PRN+Y+ +G            D+ +  +  + A L        H++Q Y FSVGPW  AE ++PNF G+++P NQRW QAIPA GR W  +LY G++P LL  +  G      +   R L W  +  LLA+ G Y LGW+  E+
Sbjct:  146 FGGYVLCQHANVVFLIGCAWLPLALLTAQRMLNSGCWKSAIGFAMVLAMMVLGGDPQMAYHCVLLAVVYGMLITFQKSNANESAEEESSATPSPNLFK-RVGLLGLSIVLALGLSAIQIGPSLSWSQHSTRSHFDQPRNVYEYLG------------DSSDRDNEDHLATLAGKPAAGTHERQLYEFSVGPWRWAELIWPNFYGQMYPENQRWAQAIPASGRVWSPTLYAGIIPLLLIASALGFRKKYTSSIARWLSWIVVLALLASLGWYGLGWLYIEI 412          
BLAST of mRNA_M-pyrifera_M_contig88838.20616.1 vs. uniprot
Match: A0A517YLM9_9BACT (Bacterial membrane protein YfhO n=2 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517YLM9_9BACT)

HSP 1 Score: 189 bits (481), Expect = 3.260e-51
Identity = 112/282 (39.72%), Postives = 152/282 (53.90%), Query Frame = 1
Query:    4 SGSVLFQYCNVVFLVGAAWLPAALWAARRLIHRQTLKYAALLGTVLALMTLGGDPQMAYHAGMIIAGYAIFQSFNKSPTAKPHSFRNRFAL--------------LAAAVTIAGVLCAVQWIPAVELTRLSSRGMPEYPRNLYQLVGSQFSAESNVFTADNPEESDGK-YAALLGSTTTGDAHQQQTYRFSVGPWHLAEFVFPNFSGELFPTNQRWIQAIPAEGRTWVASLYMGLLPALLALAC---WGTGADRQTRCLRWFTLFCLLAAGGHYALGWIARE 795
             G+V+FQYCN+VFLVGAAWLPAAL     ++ R++ K   LL  VLA+M LGGDPQMAYHA ++ AG  +  S+   P AK    +    +              L  A T A +L AVQ  P+ E T+ S R   + PRN+++ V +     SN       +E+ G+  AA +       +HQ + Y FS+ PW +AEF++PN SG + P ++ WI   P     W  SLY+GLLP L+ +A    W T  D  TR L W  L   L + G Y LGW+ RE
Sbjct:  155 GGNVVFQYCNIVFLVGAAWLPAALLGIEEIVARRSWKGTLLLAVVLAMMILGGDPQMAYHA-LLAAGLRLVCSWFGKPAAKTEDSQPSLDVINPVTSSWWYPTLQLGVAATFAFLLAAVQIFPSSEATKSSERAAYKRPRNVFEAVAT---VRSNTAGDSLLKETPGEAIAAGIFGQPEKSSHQDRAYNFSISPWRMAEFLWPNVSGRIVPVSRLWILLFPGSSPAWTPSLYLGLLPFLVGVAALRFWRT--DPTTRWLSWLVLIFALGSFGWYGLGWVVRE 430          
BLAST of mRNA_M-pyrifera_M_contig88838.20616.1 vs. uniprot
Match: A0A5Q4GZQ8_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A5Q4GZQ8_9PLAN)

HSP 1 Score: 186 bits (473), Expect = 3.430e-50
Identity = 114/276 (41.30%), Postives = 156/276 (56.52%), Query Frame = 1
Query:    1 FSGSVLFQYCNVVFLVGAAWLPAALWAARRLIHRQTLKYAALLGTVL--ALMTLGGDPQMAYHAGMIIAGYAIFQSFNKSPTAKPHSFRN--RFALLAAAVTIAGVLCAVQWIPAVELTRLSSRGMPEYPRNLYQLVG-----SQFSAESNVFTADNPEESDGKYAALLGSTTTGDAHQQQTYRFSVGPWHLAEFVFPNFSGELFPTNQRWIQAIPAEGRTWVASLYMGLLPALLALACWG-TGADRQTRCLRWFTLFCLLAAGGHYALGWIAREV 798
            FSGSVLFQ+CNVVFL+GAAWLP A+ AA RL+ R+  ++  LLG  L  A+M LGGDPQ AYHA ++    A+ Q+F +  +   H   +  R  ++AA   +A  L AVQ +P+   +  S R + + PR++Y++       ++  AE ++               L G   +G  H +  Y FS+GPW LAE V+PN SG +FP + RW   IPAEGR W  S+Y+GL+P LLAL  W       Q R   W  L   LA+ G Y LGWI  E+
Sbjct:  140 FSGSVLFQHCNVVFLIGAAWLPLAVEAADRLLTRR--RWLDLLGVALIWAMMVLGGDPQSAYHAALL----AVLQAFFRRDSVS-HLLGSVGRLGIVAA---LALALAAVQIVPSARWSSTSQRAVFDSPRSVYEVAAFLLRPAEVRAEGSIV------------GGLFGRPASG-RHDEHIYHFSLGPWRLAELVWPNVSGRMFPVHHRWASTIPAEGRIWTPSIYLGLIPLLLALRRWRLVRGQPQVRWASWVALAGTLASFGWYGLGWIVLEL 392          
BLAST of mRNA_M-pyrifera_M_contig88838.20616.1 vs. uniprot
Match: A0A7Z9L9X2_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Z9L9X2_9PLAN)

HSP 1 Score: 184 bits (466), Expect = 3.200e-49
Identity = 99/276 (35.87%), Postives = 150/276 (54.35%), Query Frame = 1
Query:    4 SGSVLFQYCNVVFLVGAAWLPAALWAARRLIHRQTLKYAALLGTVLALMTLGGDPQMAYHAGMIIAGYAIFQSFN----KSPTAKPHS--FRNRFALLAAAVTIAGVLCAVQWIPAVELTRLSSRGMPEYPRNLYQLVGSQFSAESNVFTADNPEESDGKYAALLGSTTTGDAHQQQTYRFSVGPWHLAEFVFPNFSGELFPTNQRWIQAIPAEGRTWVASLYMGLLPALLALACWGT-GADRQTRCLRWFTLFCLLAAGGHYALGWIAREVVNLV 810
            SGS+L Q+ NV++LV AAWLP AL +  +++ ++  + A  L  +L LMTLGGDPQ AYH G++   YA+  S      K    +P    F+ RF LL  A ++  +L A+Q +P  + TR S R     P +LY++  +     S              +  +  +   G  H +  Y FS+GPW  AE ++PN SG+++P ++RWI  +P EGR W  +LY+G LP LLA A W    +D   R L +  +  +LA+ G + LGW+  E  +L+
Sbjct:  153 SGSLLSQHANVIYLVSAAWLPFALQSTDQMLVQRKWRSALTLALLLTLMTLGGDPQSAYHVGLLAGLYALILSSRRGNQKREAGRPSRGWFQRRFTLLILAGSVTFLLSAIQVLPTWQWTRQSQRNSYTQPHSLYEIPSALQRRRSGRSEETQLARQQATFKGIFTTPAEG-THHRHIYHFSIGPWRFAELIWPNISGQMYPVHRRWINQLPGEGRVWSPTLYLGWLPLLLACAAWSLRSSDPSVRWLSYLVILSMLASLGWFGLGWLLYEGQSLI 427          
BLAST of mRNA_M-pyrifera_M_contig88838.20616.1 vs. uniprot
Match: UPI0019A805D0 (Uncharacterized protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=UPI0019A805D0)

HSP 1 Score: 182 bits (463), Expect = 3.490e-49
Identity = 111/270 (41.11%), Postives = 147/270 (54.44%), Query Frame = 1
Query:   22 QYCNVVFLVGAAWLPAALWAARRLIHRQTLKYAALLGTVLALMTLGGDPQMAYHAGMIIAGYAIFQSFNK-SPTAKPHSFRN-RFA---LLAAAVTIAG-VLCAVQWIPAVELTRLSSRGMPEYPRNLYQLVGSQFSAESNVFTADNPEESDGKYAALLGSTTTGDAHQQQTYRFSVGPWHLAEFVFPNFSGELFPTNQRWIQAIPAEGRTWVASLYMGLLPALLALACWGT-GADRQTRCLRWFTLFCLLAAGGHYALGWIAREVVNLV 810
            QY NVVFLVGAAWLP A  A  R++  +  +Y  +LG  LA+M LGGDPQ AYHA ++   YA+     K S     +  RN RF    LL      AG +L A+Q +P+ E  + S R     PR++Y+     ++ +       + E+   +    L        H ++ Y FSVGPW  AE ++PN SG +FPTN+RW+   PAEGR W  +LYMGLLP LLA+A       D +TR L W  L   L + G Y LGW+ARE   LV
Sbjct:    1 QYSNVVFLVGAAWLPLAALAIDRMLRLRDWRYVVMLGACLAMMILGGDPQAAYHALLMTGIYALVMQRPKLSGFGALYKLRNDRFLSGMLLTGFAACAGFLLSAIQVLPSSEAAKESERAAYRRPRSIYEAAA--YANDIQAGRLAHVEQPWQEITHGLIGPPDPTTHHERAYYFSVGPWRFAELIWPNVSGRMFPTNRRWLSLWPAEGRIWTPTLYMGLLPILLAVAQLRLRSGDERTRWLSWLVLLFTLGSLGWYGLGWLAREFCTLV 268          
BLAST of mRNA_M-pyrifera_M_contig88838.20616.1 vs. uniprot
Match: A0A2E7L702_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7L702_9PLAN)

HSP 1 Score: 183 bits (464), Expect = 5.940e-49
Identity = 113/277 (40.79%), Postives = 156/277 (56.32%), Query Frame = 1
Query:    4 SGSVLFQYCNVVFLVGAAWLPAALWAARRLIHRQTLKYAALLGTVLALMTLGGDPQMAYHAGMIIAGYAIF-----QSFNKSPT--AKPHSFRNRFA-LLAAAVTIAGVLCAVQWIPAVELTRLSSRGMPEYPRNLYQLVGSQFSAESNVFTADNPEESD--GKYAALLGSTTTGDAHQQQTYRFSVGPWHLAEFVFPNFSGELFPTNQRWIQAIPAEGRTWVASLYMGLLPALLALAC--WGTGADRQTRCLRWFTLFCLLAAGGHYALGWIAREV 798
            SG +LFQYCNVV+LV AAW+P A  A      R   ++ ALL   LA+M LGGDPQ AYH   I+A   +F     Q   ++ T  AK H +  R+A  L  AV  AG+L AVQ +P+V  T+ S R   + P+NLYQ++ +    + +V    N   +D   +    L  T     H +  Y FS+GPW L E+ +PNFSG+ FP +QRWI+ +PAE   W  +LYMGLLP L+A +   W +G     R + W  +  +LA+ G + LGWI  E+
Sbjct:  117 SGPILFQYCNVVYLVSAAWMPLAWLALSAQYKRLQTQWTALLAITLAMMVLGGDPQAAYHT--ILAALLLFVLQWRQQACRTRTMDAKRHQWIARYAGHLVTAVLGAGLLAAVQVLPSVSWTQKSDRAHIQSPQNLYQMIKTI--RQQDVSDRANTSNTDLRRQIGRPLLETPQAGTHGRNIYYFSIGPWRLLEWFWPNFSGQRFPQHQRWIEVLPAESPPWTPTLYMGLLPLLIAWSSLTWSSGRVHW-RWISWTVILSVLASFGWFGLGWILYEL 388          
BLAST of mRNA_M-pyrifera_M_contig88838.20616.1 vs. uniprot
Match: A0A518DY44_9BACT (Bacterial membrane protein YfhO n=2 Tax=Lignipirellula cremea TaxID=2528010 RepID=A0A518DY44_9BACT)

HSP 1 Score: 180 bits (457), Expect = 5.500e-48
Identity = 115/297 (38.72%), Postives = 153/297 (51.52%), Query Frame = 1
Query:    1 FSGSVLFQYCNVVFLVGAAWLPAALWAARRLIHRQTLKYAALLGTVLALMTLGGDPQMAYHAGMIIAGYAIFQSFNKSPTAKPHS---------------FRNRFALLAAAVTIAGVLCAVQWIPAVELTRLSSRGMPEYPRNLYQLVGSQFSAESNVFTADNPEESDGKYAA----------LLGSTTTGDAHQQQTYRFSVGPWHLAEFVFPNFSGELFPTNQRWIQAIPAEGRTWVASLYMGLLPALLALACWGT-GADRQTRCLRWFTLFCLLAAGGHYALGWIAREVVNLVG 813
            F G VL QY N+V+L GAAWLP AL+A  R++   + +++ + G + A++ L GDPQ AYHA ++ A + + Q  + SP  +P                   +  ALLA AV   G L AVQ +PA   +R S R   + PR +Y+ V    + ES   TA++  E++    A          L G            Y FSVGPW LAE V+PNFSG  FPT++RW +    E   W  SLY+GL P LL LA W   G D + R L W  L  LLAA G Y LGW+ + V  L G
Sbjct:  125 FGGVVLMQYANIVYLAGAAWLPLALYAGERMLSLASWRWSIVCGALWAMIVLAGDPQTAYHAALLTALFGLLQLVH-SPWRQPSEAEASTSLLARLLSARLASSCALLATAVLAGGSLAAVQILPAWAWSRTSDRVRSDSPRTIYEAVARD-TTESLPTTAEHLAETEPPSVADTAWRRSWRGLFGPXXXXXXXXX-VYLFSVGPWRLAEAVWPNFSGREFPTHRRWTRLFNDEDGAWTPSLYLGLGPLLLGLAVWTLRGGDLRLRWLSWMLLLSLLAAFGWYGLGWLIQGVRTLTG 418          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88838.20616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A847H0H5_9BACT1.810e-5742.56YfhO family protein n=1 Tax=Candidatus Anammoximic... [more]
A0A2E8B0U9_9PLAN2.120e-5442.16Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A2E0B3D1_9BACT2.740e-5241.30Uncharacterized protein n=2 Tax=Planctomycetia Tax... [more]
A0A2G2L0X8_9BACT2.030e-5138.21Uncharacterized protein n=1 Tax=Blastopirellula sp... [more]
A0A517YLM9_9BACT3.260e-5139.72Bacterial membrane protein YfhO n=2 Tax=Anatilimno... [more]
A0A5Q4GZQ8_9PLAN3.430e-5041.30Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A7Z9L9X2_9PLAN3.200e-4935.87Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
UPI0019A805D03.490e-4941.11Uncharacterized protein n=1 Tax=Pirellulaceae bact... [more]
A0A2E7L702_9PLAN5.940e-4940.79Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A518DY44_9BACT5.500e-4838.72Bacterial membrane protein YfhO n=2 Tax=Lignipirel... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88838contigM-pyrifera_M_contig88838:1..813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score159.5
Seed ortholog evalue2.3e-36
Seed eggNOG ortholog530564.Psta_4419
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Bacterial membrane protein, YfhO
EggNOG OGs2IZ5C@203682,COG4485@1,COG4485@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size813
Cds size813
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816798.3716555-CDS-M-pyrifera_M_contig88838:0..8131622816798.3716555-CDS-M-pyrifera_M_contig88838:0..813Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88838 1..813 -
1692278185.008779-CDS-M-pyrifera_M_contig88838:0..8131692278185.008779-CDS-M-pyrifera_M_contig88838:0..813Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88838 1..813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88838.20616.1prot_M-pyrifera_M_contig88838.20616.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88838 1..813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88838.20616.1

>prot_M-pyrifera_M_contig88838.20616.1 ID=prot_M-pyrifera_M_contig88838.20616.1|Name=mRNA_M-pyrifera_M_contig88838.20616.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=271bp
FSGSVLFQYCNVVFLVGAAWLPAALWAARRLIHRQTLKYAALLGTVLALM
TLGGDPQMAYHAGMIIAGYAIFQSFNKSPTAKPHSFRNRFALLAAAVTIA
GVLCAVQWIPAVELTRLSSRGMPEYPRNLYQLVGSQFSAESNVFTADNPE
ESDGKYAALLGSTTTGDAHQQQTYRFSVGPWHLAEFVFPNFSGELFPTNQ
RWIQAIPAEGRTWVASLYMGLLPALLALACWGTGADRQTRCLRWFTLFCL
LAAGGHYALGWIAREVVNLVG
back to top

mRNA from alignment at M-pyrifera_M_contig88838:1..813-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88838.20616.1 ID=mRNA_M-pyrifera_M_contig88838.20616.1|Name=mRNA_M-pyrifera_M_contig88838.20616.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=813bp|location=Sequence derived from alignment at M-pyrifera_M_contig88838:1..813- (Macrocystis pyrifera P11B4 male)
TTCAGTGGGAGCGTGCTGTTTCAATATTGCAACGTCGTATTTCTTGTCGG CGCCGCCTGGCTTCCGGCAGCACTGTGGGCGGCCCGCAGGCTAATCCACC GGCAGACGCTAAAGTACGCGGCGCTGCTCGGCACGGTGCTGGCCCTGATG ACCTTAGGGGGCGACCCTCAAATGGCATACCACGCCGGGATGATCATCGC CGGTTACGCCATTTTCCAGAGTTTCAACAAGTCGCCCACTGCCAAGCCGC ACAGCTTCAGAAATCGATTCGCGCTGCTGGCTGCCGCCGTGACAATCGCC GGAGTACTGTGTGCCGTGCAGTGGATTCCCGCCGTGGAACTCACCCGGCT AAGTTCGCGCGGAATGCCAGAGTACCCCCGCAATCTGTATCAGTTGGTTG GAAGTCAGTTCTCAGCGGAATCGAATGTGTTCACCGCCGATAACCCCGAG GAATCCGACGGCAAGTATGCCGCACTACTTGGGAGCACCACTACGGGGGA CGCCCATCAACAGCAAACGTATCGCTTCAGCGTTGGGCCGTGGCATCTGG CCGAATTCGTGTTCCCCAACTTCAGCGGCGAATTGTTTCCCACCAATCAA CGCTGGATTCAAGCCATCCCCGCGGAAGGTCGCACCTGGGTCGCTTCGTT GTACATGGGCCTGCTTCCCGCCCTGTTGGCGTTGGCCTGCTGGGGAACGG GGGCCGATCGACAAACGCGGTGCCTGCGGTGGTTCACCCTGTTCTGTTTG CTCGCCGCCGGTGGACACTACGCCCTCGGATGGATTGCCAGGGAAGTGGT GAATCTGGTTGGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig88838:1..813-

>mRNA_M-pyrifera_M_contig88838.20616.1 ID=mRNA_M-pyrifera_M_contig88838.20616.1|Name=mRNA_M-pyrifera_M_contig88838.20616.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1626bp|location=Sequence derived from alignment at M-pyrifera_M_contig88838:1..813- (Macrocystis pyrifera P11B4 male)
TTCAGTGGGAGCGTGCTGTTTCAATATTGCAACGTCGTATTTCTTGTCGG
CGCCGCCTGGCTTCCGGCAGCACTGTGGGCGGCCCGCAGGCTAATCCACC
GGCAGACGCTAAAGTACGCGGCGCTGCTCGGCACGGTGCTGGCCCTGATG
ACCTTAGGGGGCGACCCTCAAATGGCATACCACGCCGGGATGATCATCGC
CGGTTACGCCATTTTCCAGAGTTTCAACAAGTCGCCCACTGCCAAGCCGC
ACAGCTTCAGAAATCGATTCGCGCTGCTGGCTGCCGCCGTGACAATCGCC
GGAGTACTGTGTGCCGTGCAGTGGATTCCCGCCGTGGAACTCACCCGGCT
AAGTTCGCGCGGAATGCCAGAGTACCCCCGCAATCTGTATCAGTTGGTTG
GAAGTCAGTTCTCAGCGGAATCGAATGTGTTCACCGCCGATAACCCCGAG
GAATCCGACGGCAAGTATGCCGCACTACTTGGGAGCACCACTACGGGGGA
CGCCCATCAACAGCAAACGTATCGCTTCAGCGTTGGGCCGTGGCATCTGG
CCGAATTCGTGTTCCCCAACTTCAGCGGCGAATTGTTTCCCACCAATCAA
CGCTGGATTCAAGCCATCCCCGCGGAAGGTCGCACCTGGGTCGCTTCGTT
GTACATGGGCCTGCTTCCCGCCCTGTTGGCGTTGGCCTGCTGGGGAACGG
GGGCCGATCGACAAACGCGGTGCCTGCGGTGGTTCACCCTGTTCTGTTTG
CTCGCCGCCGGTGGACACTACGCCCTCGGATGGATTGCCAGGGAAGTGGT
GAATCTGGTTGGTTTCAGTGGGAGCGTGCTGTTTCAATATTGCAACGTCG
TATTTCTTGTCGGCGCCGCCTGGCTTCCGGCAGCACTGTGGGCGGCCCGC
AGGCTAATCCACCGGCAGACGCTAAAGTACGCGGCGCTGCTCGGCACGGT
GCTGGCCCTGATGACCTTAGGGGGCGACCCTCAAATGGCATACCACGCCG
GGATGATCATCGCCGGTTACGCCATTTTCCAGAGTTTCAACAAGTCGCCC
ACTGCCAAGCCGCACAGCTTCAGAAATCGATTCGCGCTGCTGGCTGCCGC
CGTGACAATCGCCGGAGTACTGTGTGCCGTGCAGTGGATTCCCGCCGTGG
AACTCACCCGGCTAAGTTCGCGCGGAATGCCAGAGTACCCCCGCAATCTG
TATCAGTTGGTTGGAAGTCAGTTCTCAGCGGAATCGAATGTGTTCACCGC
CGATAACCCCGAGGAATCCGACGGCAAGTATGCCGCACTACTTGGGAGCA
CCACTACGGGGGACGCCCATCAACAGCAAACGTATCGCTTCAGCGTTGGG
CCGTGGCATCTGGCCGAATTCGTGTTCCCCAACTTCAGCGGCGAATTGTT
TCCCACCAATCAACGCTGGATTCAAGCCATCCCCGCGGAAGGTCGCACCT
GGGTCGCTTCGTTGTACATGGGCCTGCTTCCCGCCCTGTTGGCGTTGGCC
TGCTGGGGAACGGGGGCCGATCGACAAACGCGGTGCCTGCGGTGGTTCAC
CCTGTTCTGTTTGCTCGCCGCCGGTGGACACTACGCCCTCGGATGGATTG
CCAGGGAAGTGGTGAATCTGGTTGGT
back to top