mRNA_M-pyrifera_M_contig88763.20602.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88763.20602.1
Unique NamemRNA_M-pyrifera_M_contig88763.20602.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88763.20602.1 vs. uniprot
Match: UPI001CCB5E0F (HYR domain-containing protein n=1 Tax=Hyalangium sp. H56D21 TaxID=2861190 RepID=UPI001CCB5E0F)

HSP 1 Score: 65.9 bits (159), Expect = 6.440e-10
Identity = 44/125 (35.20%), Postives = 58/125 (46.40%), Query Frame = 1
Query:    4 PELVADINQSGVPVSGIPNEDRALILENQGHLTLVGSTQATGIELFGFTPGAAPSLLRDIRPGVKDSDPRLGVALAGFVYFTANNGFGRELWRSNGTPEGTRLFSLAGSLPADPEQLVTDGTRLF 378
            P LV DI  S  PV      D +  ++    L  V    A G EL+     AA  L+RD  PG   S P +  A  G +YFT ++    ELWRS+GTPEGT+ F    S      +L   G  ++
Sbjct:   48 PVLVRDITPSPSPVVDSWGSDPSKFVQVGNKLFFVAQDSAHGYELWVIDGTAAARLVRDFAPGDTSSYPSMLTAFKGLLYFTISS----ELWRSDGTPEGTQPFYPETSTALGVSELKVIGETMY 168          
BLAST of mRNA_M-pyrifera_M_contig88763.20602.1 vs. uniprot
Match: UPI001AD05620 (Uncharacterized protein n=2 Tax=Corallococcus macrosporus TaxID=35 RepID=UPI001AD05620)

HSP 1 Score: 63.9 bits (154), Expect = 2.920e-9
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 1
Query:  151 PGAAPSLLRDIRPGVKDSDPRLG----VALAGFVYFTANNGF-GRELWRSNGTPEGTRLFS--LAGSLPADPEQLVTDGTRLF 378
            P AAP LL+D+  G+    PR+G    V L    YFT ++G  GRELW+++GTPEGT L +  L GSL + P  LV  G RL+
Sbjct:    7 PLAAPFLLKDVVQGLTREGPRMGPTDFVELGTARYFTMDDGIHGRELWKTDGTPEGTSLVTDLLPGSLGSKPGSLVRMGDRLY 89          
BLAST of mRNA_M-pyrifera_M_contig88763.20602.1 vs. uniprot
Match: UPI000A01CEBB (hypothetical protein n=1 Tax=Marinobacterium rhizophilum TaxID=420402 RepID=UPI000A01CEBB)

HSP 1 Score: 60.8 bits (146), Expect = 1.760e-8
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 1
Query:  163 PSLLRDIRPGVKDSDPRLGVALAGFVYFTANN--GFGRELWRSNGTPEGT-RLFSLAGSLPADPEQLVTDGTRLFATVLD 393
            P L+ DI PG   S P   V++ GFVYF+AN+   FGRELW+S+GT EGT  +  +     ++P+ L   G +LF    D
Sbjct:   27 PYLVSDINPGGGGSSPMDTVSMGGFVYFSANDFGDFGRELWKSDGTNEGTVSVKDIFPGSSSNPDSLTPIGNKLFFVARD 106          
BLAST of mRNA_M-pyrifera_M_contig88763.20602.1 vs. uniprot
Match: UPI0008339C2A (T9SS type A sorting domain-containing protein n=1 Tax=Tamlana agarivorans TaxID=481183 RepID=UPI0008339C2A)

HSP 1 Score: 59.3 bits (142), Expect = 1.210e-7
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 1
Query:  199 DSDPRLGVALAGFVYFTANNG----FGRELWRSNGTPEGTRLFS--LAGSLPADPEQLVTDGTRLFATVLD 393
            DSDP+  VA     YFTA NG    FGRELW SNGTPEGT +F     G   ++P+ L+  G+ L+ +  D
Sbjct:   35 DSDPQNLVAFKNGFYFTATNGSFQNFGRELWYSNGTPEGTMMFKDINKGQYSSNPKSLIVIGSTLYFSADD 105          
BLAST of mRNA_M-pyrifera_M_contig88763.20602.1 vs. uniprot
Match: A0A085WWQ8_9DELT (Putative cycloinulo-oligosaccharide fructanotransferase n=1 Tax=Hyalangium minutum TaxID=394096 RepID=A0A085WWQ8_9DELT)

HSP 1 Score: 58.2 bits (139), Expect = 2.970e-7
Identity = 51/143 (35.66%), Postives = 69/143 (48.25%), Query Frame = 1
Query:    4 PELVADINQSGVPVSGIPNEDR----ALILENQGHLTLVGSTQATGIELFGFTPG--AAPSLLRDIRPGVKDS--DPRLG---VALAGFVYFTANNGFGRELWRSNGTPEGT-RLFSL-AGSLPADPEQLVTDGTRLFATVLD 393
            P LVAD+N    P    P+         ++ ++  L  V S  +TG EL+  + G  A P  ++DI PG   S   P  G    A  G +YF A  G G ELWRS+GT  GT ++  L  GS  ++P QL   G +LF    D
Sbjct:   50 PTLVADLNPG--PSDAFPDGGTLWAPGSLVASKRQLYFVASEDSTGPELW-MSDGTDAGPRRVKDIVPGPAGSMATPLTGSLTAAPGGGIYFVARTGSGEELWRSDGTENGTVQVRDLWPGSSGSEPSQLTVAGGQLFFAAND 189          
BLAST of mRNA_M-pyrifera_M_contig88763.20602.1 vs. uniprot
Match: A0A6I4NIA4_9FLAO (T9SS type A sorting domain-containing protein n=1 Tax=Flavobacterium hydrocarbonoxydans TaxID=2683249 RepID=A0A6I4NIA4_9FLAO)

HSP 1 Score: 57.8 bits (138), Expect = 3.910e-7
Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = 1
Query:   85 NQGHLTLVGSTQATGIELF---GFTPGAAPSLLRDIRPGVKD----SDPRLGVALAGFVYFTANNGF-GRELWRSNGTPEGTRLFS--LAGSLPADPEQLVTDGTRLFATVLD 393
            N G L    +    GIEL+   G   G    L++D++PG       ++ R  +A+ G +YF  +NG  GRELW+S+GTPEGT +     AGS  ++PE  V+    L+ +  D
Sbjct:  290 NNGILYFTATDGVNGIELWKSDGTEEGTV--LVKDVKPGAAGGLDLNNIRNFIAINGTLYFMGDNGVSGRELWKSDGTPEGTLMVKDIRAGSSWSEPEGFVSYNNTLYFSAYD 400          
BLAST of mRNA_M-pyrifera_M_contig88763.20602.1 vs. uniprot
Match: UPI001A8DCDA4 (hypothetical protein n=1 Tax=Corallococcus macrosporus TaxID=35 RepID=UPI001A8DCDA4)

HSP 1 Score: 57.4 bits (137), Expect = 5.510e-7
Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 1
Query:  157 AAPSLLRDIRPGVKDSDPRLGV----ALAGFVYFTANNGF-GRELWRSNGTPEGTRLFS--LAGSLPADPEQLVTDGTRLFAT 384
            A P L++D+ PGV+   P + +     L  + YF A++G  G ELWR++GTPEGT L +  L G   +DP  LV  G  L+ T
Sbjct:   92 ARPFLVKDLSPGVRPGLPHVRLDGRAQLGAYTYFAADDGIHGWELWRTDGTPEGTSLVTDLLPGREGSDPSPLVRMGDSLYFT 174          
BLAST of mRNA_M-pyrifera_M_contig88763.20602.1 vs. uniprot
Match: UPI001A8F949B (hypothetical protein n=1 Tax=Corallococcus sp. NCSPR001 TaxID=2813576 RepID=UPI001A8F949B)

HSP 1 Score: 57.4 bits (137), Expect = 5.670e-7
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 1
Query:  163 PSLLRDIRPGVKDS---DPRLGVALAGFVYFTANNGF-GRELWRSNGTPEGTRLFS--LAGSLPADPEQLVTDGTRLF 378
            P LL+DI PGV  +    P   VAL    +FT ++G  G ELWR++GTPEGT + +  + G+L ++P  L+  G RL+
Sbjct:   67 PLLLKDILPGVPSAPELSPASFVALGATQFFTMDDGIHGPELWRTDGTPEGTAMVADLMPGALGSNPASLIPMGDRLY 144          
BLAST of mRNA_M-pyrifera_M_contig88763.20602.1 vs. uniprot
Match: A0A3A8H1L6_9DELT (Uncharacterized protein n=1 Tax=Corallococcus sp. CA054B TaxID=2316734 RepID=A0A3A8H1L6_9DELT)

HSP 1 Score: 57.0 bits (136), Expect = 7.680e-7
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 1
Query:  148 TPGAAPSLLRDI---RPGVKDSDPRLGVALAGFVYFTANNGF-GRELWRSNGTPEGTRLFS--LAGSLPADPEQLVTDGTRLF 378
            TP  AP LL+D+    PG     P   V L    +FT ++G  G+ELWR++GTPEGT + +  + G+L ++P  L+  G RL+
Sbjct:    8 TPLPAPLLLKDVIPQDPGAPSLFPASFVELGAIQFFTLDDGIHGQELWRTDGTPEGTAMVADLMPGALGSNPASLIPMGGRLY 90          
BLAST of mRNA_M-pyrifera_M_contig88763.20602.1 vs. uniprot
Match: A0A848Y1D7_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A848Y1D7_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 2.580e-6
Identity = 36/85 (42.35%), Postives = 44/85 (51.76%), Query Frame = 1
Query:  151 PGAAPS-LLRDIRPGVKDSDPRLGVALAGFVYFTANN-GFGRELWRSNGTPEGTRLFS--LAGSLPADPEQLVTDGTRLFATVLD 393
            PG A S  L DI PG  DS P        + YF A+    GRELW+S+GTPEGTRL +  L G+   +P  +   G  LF    D
Sbjct:   16 PGVAASQTLLDINPGPDDSLPGCFTGYDEYAYFAASTVPAGRELWKSDGTPEGTRLVADLLPGNAGGEPMGMTAAGGLLFFVARD 100          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88763.20602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
UPI001CCB5E0F6.440e-1035.20HYR domain-containing protein n=1 Tax=Hyalangium s... [more]
UPI001AD056202.920e-946.99Uncharacterized protein n=2 Tax=Corallococcus macr... [more]
UPI000A01CEBB1.760e-842.50hypothetical protein n=1 Tax=Marinobacterium rhizo... [more]
UPI0008339C2A1.210e-746.48T9SS type A sorting domain-containing protein n=1 ... [more]
A0A085WWQ8_9DELT2.970e-735.66Putative cycloinulo-oligosaccharide fructanotransf... [more]
A0A6I4NIA4_9FLAO3.910e-735.40T9SS type A sorting domain-containing protein n=1 ... [more]
UPI001A8DCDA45.510e-740.96hypothetical protein n=1 Tax=Corallococcus macrosp... [more]
UPI001A8F949B5.670e-742.31hypothetical protein n=1 Tax=Corallococcus sp. NCS... [more]
A0A3A8H1L6_9DELT7.680e-739.76Uncharacterized protein n=1 Tax=Corallococcus sp. ... [more]
A0A848Y1D7_9BACT2.580e-642.35T9SS type A sorting domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88763contigM-pyrifera_M_contig88763:412..804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816797.670033-CDS-M-pyrifera_M_contig88763:411..8041622816797.670033-CDS-M-pyrifera_M_contig88763:411..804Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88763 412..804 +
1692278184.5141037-CDS-M-pyrifera_M_contig88763:411..8041692278184.5141037-CDS-M-pyrifera_M_contig88763:411..804Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88763 412..804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88763.20602.1prot_M-pyrifera_M_contig88763.20602.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88763 412..804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88763.20602.1

>prot_M-pyrifera_M_contig88763.20602.1 ID=prot_M-pyrifera_M_contig88763.20602.1|Name=mRNA_M-pyrifera_M_contig88763.20602.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
GPELVADINQSGVPVSGIPNEDRALILENQGHLTLVGSTQATGIELFGFT
PGAAPSLLRDIRPGVKDSDPRLGVALAGFVYFTANNGFGRELWRSNGTPE
GTRLFSLAGSLPADPEQLVTDGTRLFATVLD
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mRNA from alignment at M-pyrifera_M_contig88763:412..804+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88763.20602.1 ID=mRNA_M-pyrifera_M_contig88763.20602.1|Name=mRNA_M-pyrifera_M_contig88763.20602.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig88763:412..804+ (Macrocystis pyrifera P11B4 male)
GGCCCCGAGCTGGTGGCCGACATCAACCAGTCCGGCGTGCCCGTGTCGGG GATTCCGAACGAAGACCGCGCGCTCATCCTCGAGAACCAAGGCCATCTCA CGCTCGTGGGCTCGACCCAGGCGACCGGGATCGAGCTCTTCGGGTTCACG CCCGGCGCAGCGCCCAGCCTGCTGCGCGACATCCGACCCGGGGTCAAGGA CTCGGATCCCAGACTCGGCGTTGCGCTGGCTGGATTCGTCTACTTCACCG CGAACAACGGGTTCGGTCGGGAGCTCTGGCGCTCGAACGGCACGCCCGAG GGCACGCGGCTCTTCAGTTTGGCGGGAAGTCTGCCCGCGGATCCCGAGCA GCTCGTTACCGACGGTACCCGCTTGTTCGCCACGGTCCTCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88763:412..804+

>mRNA_M-pyrifera_M_contig88763.20602.1 ID=mRNA_M-pyrifera_M_contig88763.20602.1|Name=mRNA_M-pyrifera_M_contig88763.20602.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig88763:412..804+ (Macrocystis pyrifera P11B4 male)
GGCCCCGAGCTGGTGGCCGACATCAACCAGTCCGGCGTGCCCGTGTCGGG
GATTCCGAACGAAGACCGCGCGCTCATCCTCGAGAACCAAGGCCATCTCA
CGCTCGTGGGCTCGACCCAGGCGACCGGGATCGAGCTCTTCGGGTTCACG
CCCGGCGCAGCGCCCAGCCTGCTGCGCGACATCCGACCCGGGGTCAAGGA
CTCGGATCCCAGACTCGGCGTTGCGCTGGCTGGATTCGTCTACTTCACCG
CGAACAACGGGTTCGGTCGGGAGCTCTGGCGCTCGAACGGCACGCCCGAG
GGCACGCGGCTCTTCAGTTTGGCGGGAAGTCTGCCCGCGGATCCCGAGCA
GCTCGTTACCGACGGTACCCGCTTGTTCGCCACGGTCCTCGACGGCCCCG
AGCTGGTGGCCGACATCAACCAGTCCGGCGTGCCCGTGTCGGGGATTCCG
AACGAAGACCGCGCGCTCATCCTCGAGAACCAAGGCCATCTCACGCTCGT
GGGCTCGACCCAGGCGACCGGGATCGAGCTCTTCGGGTTCACGCCCGGCG
CAGCGCCCAGCCTGCTGCGCGACATCCGACCCGGGGTCAAGGACTCGGAT
CCCAGACTCGGCGTTGCGCTGGCTGGATTCGTCTACTTCACCGCGAACAA
CGGGTTCGGTCGGGAGCTCTGGCGCTCGAACGGCACGCCCGAGGGCACGC
GGCTCTTCAGTTTGGCGGGAAGTCTGCCCGCGGATCCCGAGCAGCTCGTT
ACCGACGGTACCCGCTTGTTCGCCACGGTCCTCGAC
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