mRNA_M-pyrifera_M_contig88714.20599.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88714.20599.1
Unique NamemRNA_M-pyrifera_M_contig88714.20599.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88714.20599.1 vs. uniprot
Match: A0A5A8C9E4_CAFRO (S5 DRBM domain-containing protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8C9E4_CAFRO)

HSP 1 Score: 176 bits (446), Expect = 1.620e-49
Identity = 82/149 (55.03%), Postives = 111/149 (74.50%), Query Frame = 1
Query:    1 QVVRGGMEETAKALVLVGNRRGGIGYGVGRHKQADRAVELAISAAERDMIFISTYRGQLYHDLVGKKNRVKVIVESRPPAYDTPRMHWIIETALELAGIRHAMATVVGPKRRTTYTIVQALFEAFKQYQPYDASARMRGRRIVHVSDDR 447
            ++VRGGME T KA+ +VGN  GGIG+G+ RH QADRA ELA++AA+RDMI +S Y+GQLYHDLVGKKN +KV++ SR P ++ P    +I T +EL G+RH  A ++GPKRR  +T+ QALF AF  + PY+ SA  RG R++++  DR
Sbjct:  409 KIVRGGMETTEKAMAIVGNGCGGIGFGMARHAQADRATELAVAAAQRDMIHVSLYKGQLYHDLVGKKNNIKVLIWSRAPGHEKPSGDHMITTIMELMGVRHYSAKIIGPKRRNPFTVAQALFNAFDNHLPYEVSAANRGLRLLNLGADR 557          
BLAST of mRNA_M-pyrifera_M_contig88714.20599.1 vs. uniprot
Match: A0A482REY0_9ARCH (S5 DRBM domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482REY0_9ARCH)

HSP 1 Score: 130 bits (328), Expect = 3.940e-35
Identity = 64/149 (42.95%), Postives = 96/149 (64.43%), Query Frame = 1
Query:    1 QVVRGGMEETAKALVLVGNRRGGIGYGVGRHKQADRAVELAISAAERDMIFISTYRGQLYHDLVGKKNRVKVIVESRPPAYDTPRMHWIIETALELAGIRHAMATVVGPKRRTTYTIVQALFEAFKQYQPYDASARMRGRRIVHVSDDR 447
            QVV+GGM  + +  ++VGN  GG G+G+G+HK+   A + A++ A+RDMI +S ++ QLYHDL+GKKN + VIV + P +        +I+   E+ GI HA A +VG +RR  Y +VQALF++F  + P +  A MRG R+  +  DR
Sbjct:   55 QVVKGGMIASTRCCIVVGNGMGGGGFGIGKHKEPFMATKQALANAQRDMIHVSLHKKQLYHDLIGKKNNLYVIVRTMPASTVAQNCSPLIQDIFEMMGIEHASAKIVGSRRRNPYNVVQALFDSFNHHMPPEHEAYMRGLRMQWMGADR 203          
BLAST of mRNA_M-pyrifera_M_contig88714.20599.1 vs. uniprot
Match: A0A7S3UU99_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU99_HETAK)

HSP 1 Score: 84.7 bits (208), Expect = 1.250e-17
Identity = 52/150 (34.67%), Postives = 85/150 (56.67%), Query Frame = 1
Query:    1 QVVRGGMEETAKALVLVGNRRGGIGYGVGRHKQADRAVELAISAAERDMIFISTYR-GQLYHDLVGKKNRVKVIVESRPPAYDTPRMHWIIETALELAGIRHAMATVVGPKRRTTYTIVQALFEAFKQYQPYDASARMRGRRIVHVSDDR 447
            +VV+GG   T +A+V++GN +G +GYG+G+  +   AV+ AI AA R++I++  +  G L  D  GK N   V + +  P         +I T L+ AG+  A    VG  RR  + +++A F A ++++  +A AR RG+RIV +   R
Sbjct:   42 KVVKGGYLSTNRAVVVIGNLKGAVGYGMGKAAENRDAVDRAIRAASRNLIYVDRFLDGGLAQDCAGKHNTCLVKLRAVRPGAGLSAGP-LIRTVLQSAGVADASGKAVG--RRNVFAVLRATFRALERHEGVEAIARKRGKRIVSMEKAR 188          
BLAST of mRNA_M-pyrifera_M_contig88714.20599.1 vs. uniprot
Match: A0A7S1U8N8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8N8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 8.130e-17
Identity = 52/146 (35.62%), Postives = 81/146 (55.48%), Query Frame = 1
Query:    1 QVVRGGMEETAKALVLVGNRRGGIGYGVGRHKQADRAVELAISAAERDMIFISTYRGQ-LYHDLVGKKNRVKVIVESRPPAYDTPRMHWIIETALELAGIRHAMATVVGPKRRTTYTIVQALFEAFKQYQPYDASARMRGRRIVHV 435
            +VV GG     +AL +VGN  G +G+GVG+ +    A E +   A++++I +  Y G+ LYHDL GK N  +V + +RP   +  R   I    +E AGI  A   + GP     Y++V+A F A  +++     AR+RGRRI+ +
Sbjct:   66 KVVPGGTVPRFRALTVVGNINGAVGFGVGKAEDIQDATEKSFRNAKKNIIIVDRYFGRALYHDLYGKHNGCRVWIYARPVNTEL-RAGRITAAIMEAAGIMDATVRIDGPMN--PYSVVRATFNALSKHRSIVHHARVRGRRILSL 208          
BLAST of mRNA_M-pyrifera_M_contig88714.20599.1 vs. uniprot
Match: A0A2D5YPT1_9PROT (30S ribosomal protein S5 n=2 Tax=Bacteriovoracales TaxID=2024979 RepID=A0A2D5YPT1_9PROT)

HSP 1 Score: 74.3 bits (181), Expect = 1.350e-13
Identity = 44/143 (30.77%), Postives = 82/143 (57.34%), Query Frame = 1
Query:    1 QVVRGGMEETAKALVLVGNRRGGIGYGVGRHKQADRAVELAISAAERDMIFISTYRGQLYHDLVGKKNRVKVIVESRPPAYDTP-RMHWIIETALELAGIRHAMATVVGPKRRTTYTIVQALFEAFKQYQPYDASARMRGRRI 426
            +V++GG   +  AL++VG+++G +GYG+G+ K+   A+  A  AA++ MI +    G + H+++G+ +  K++   +P A  T  +      + LELAGI+  +      +    + IV+A F+A KQ +  D  AR+RG+ +
Sbjct:   53 KVMKGGRRFSFSALMIVGDKKGKVGYGLGKAKEVPEAIRKATQAAQKSMISVPVDGGTIPHEVLGEFDAGKILF--KPAAEGTGVKAAGACRSILELAGIKDVLTK--SQRGNNPHNIVKATFDALKQLRSADEVARVRGKDV 191          
BLAST of mRNA_M-pyrifera_M_contig88714.20599.1 vs. uniprot
Match: A0A1F3SJJ1_9PROT (30S ribosomal protein S5 n=1 Tax=Bdellovibrionales bacterium GWA2_49_15 TaxID=1797384 RepID=A0A1F3SJJ1_9PROT)

HSP 1 Score: 73.6 bits (179), Expect = 1.540e-13
Identity = 43/146 (29.45%), Postives = 82/146 (56.16%), Query Frame = 1
Query:    1 QVVRGGMEETAKALVLVGNRRGGIGYGVGRHKQADRAVELAISAAERDMIFISTYRGQLYHDLVGKKNRVKVIVESRPPAYDTP-RMHWIIETALELAGIRHAMATVVGPKRRTTYTIVQALFEAFKQYQPYDASARMRGRRIVHV 435
            +VV+GG   +  AL++VG+++G +G+G+G+  +   A+  AI AA R+MI +S  +G + H ++G  +  ++I   +P A  T  +      + LELAG+++ +   V  +    + +V+A F+A +  +  +  A MRG  I  +
Sbjct:   26 KVVKGGRRFSFSALMIVGDKKGSVGFGLGKANEVPEAIRKAIQAAHRNMIKVSLDKGTIPHQIIGTHDAGRIIF--KPAAEGTGIKAAGACRSILELAGVKNVLTKSV--RNNNPHNVVKATFDALRALRSAEQIAAMRGIDIKRI 167          
BLAST of mRNA_M-pyrifera_M_contig88714.20599.1 vs. uniprot
Match: A0A2E2EE63_9PROT (30S ribosomal protein S5 n=1 Tax=Halobacteriovoraceae bacterium TaxID=2026745 RepID=A0A2E2EE63_9PROT)

HSP 1 Score: 73.2 bits (178), Expect = 3.530e-13
Identity = 45/140 (32.14%), Postives = 80/140 (57.14%), Query Frame = 1
Query:    1 QVVRGGMEETAKALVLVGNRRGGIGYGVGRHKQADRAVELAISAAERDMIFISTYRGQLYHDLVGKKNRVKVIVESRPPAYDTP-RMHWIIETALELAGIRHAMATVVGPKRRTTYTIVQALFEAFKQYQPYDASARMRG 417
            +VV+GG   +  ALV+VG+++G +GYG+G+ K+   A+  A   A + MI +    G + H+++G+ +  K++   +P A  T  +      T LELAGI++ +   +  +    + +V+A FEAF+Q +  D  A+ RG
Sbjct:   48 KVVKGGRRFSFSALVIVGDQKGKVGYGLGKAKEVPDAIRKASQEAAKKMITVPVEDGTIPHEVLGEFDAGKILF--KPAAVGTGVKAAGACRTILELAGIKNVLTKSL--RGSNPHNVVKATFEAFRQMRSVDEVAQSRG 183          
BLAST of mRNA_M-pyrifera_M_contig88714.20599.1 vs. uniprot
Match: A0A2E2UBG6_9PROT (30S ribosomal protein S5 n=1 Tax=Halobacteriovoraceae bacterium TaxID=2026745 RepID=A0A2E2UBG6_9PROT)

HSP 1 Score: 72.8 bits (177), Expect = 5.310e-13
Identity = 43/140 (30.71%), Postives = 79/140 (56.43%), Query Frame = 1
Query:    1 QVVRGGMEETAKALVLVGNRRGGIGYGVGRHKQADRAVELAISAAERDMIFISTYRGQLYHDLVGKKNRVKVIVESRPPAYDTP-RMHWIIETALELAGIRHAMATVVGPKRRTTYTIVQALFEAFKQYQPYDASARMRG 417
            +VV+GG   +  ALV+VG+++G +GYG+G+ K+   A+  A   A + MI++   +G L H+++G+ +  K++   RP +  T  +      T LELAG+++ +   +  +    + +V+A F A K  +  D  A+ RG
Sbjct:   52 KVVKGGRRFSFSALVIVGDQKGKVGYGLGKAKEVPDAIRKASQVAAKSMIYVPVEKGTLPHEVLGEFDAGKILF--RPASEGTGIKAAGACRTILELAGVKNVLTKSM--RGNNPHNVVKATFAALKNIRSVDQVAKARG 187          
BLAST of mRNA_M-pyrifera_M_contig88714.20599.1 vs. uniprot
Match: A0A1Y2FSQ1_PROLT (Ribosomal protein S5, C-terminal domain-domain-containing protein n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2FSQ1_PROLT)

HSP 1 Score: 71.2 bits (173), Expect = 6.440e-13
Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   40 LVLVGNRRGGIGYGVGRHKQADRAVELAISAAERDMIFISTYRGQ-LYHDLVGKKNRVKVIVESRPPAYDTPRMHWIIETALELAGIRHAMATVVGPKRRTTYTIVQALFEAFKQYQPYDASARMRGRRIVHV 435
            L +VGN +G IG+G G+H +   A   A++ A ++M F+  Y+ + +Y D+  K + V++ + SRP  +     H+I E     AGI    A V G   RT   +V+ +FEA K+ +     A+ RGRRIV V
Sbjct:    4 LAVVGNGKGMIGFGEGKHAEQGTATRKAVTQAVKNMEFVHRYQDRTIYGDVDYKFHAVQLRLRSRPAGFGIRANHFIYEIC-RCAGITDLSAKVWGS--RTGMNVVKGVFEALKEQRLPSTIAQARGRRIVDV 133          
BLAST of mRNA_M-pyrifera_M_contig88714.20599.1 vs. uniprot
Match: R7GKK4_9CLOT (30S ribosomal protein S5 n=3 Tax=Terrabacteria group TaxID=1783272 RepID=R7GKK4_9CLOT)

HSP 1 Score: 71.6 bits (174), Expect = 8.400e-13
Identity = 45/146 (30.82%), Postives = 78/146 (53.42%), Query Frame = 1
Query:    1 QVVRGGMEETAKALVLVGNRRGGIGYGVGRHKQADRAVELAISAAERDMIFISTYRGQLYHDLVGKKNRVKVIVESRPPAYDTPRMHW-IIETALELAGIRHAMATVVGPKRRTTYTIVQALFEAFKQYQPYDASARMRGRRIVHV 435
            +VV+GG      ALV++G+R+G +G+G G+  +   A++ AI  A+++MI++ T    + H + G     KV++  RP A  T  +    +   LELAGI   ++  +G   RT   +V+A FE  K+    +  A  RG+ +  +
Sbjct:   27 KVVKGGRRFRFAALVVIGDRKGNVGFGSGKSNEVPDAIKKAIENAKKNMIYVPTVNTTIPHTVTGTFGAGKVLL--RPAAAGTGVIAGGPVRAVLELAGISDILSKALGS--RTPINMVRATFEGLKELSTVEQIAARRGKTVEEI 168          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88714.20599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8C9E4_CAFRO1.620e-4955.03S5 DRBM domain-containing protein n=3 Tax=Sar TaxI... [more]
A0A482REY0_9ARCH3.940e-3542.95S5 DRBM domain-containing protein n=1 Tax=archaeon... [more]
A0A7S3UU99_HETAK1.250e-1734.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1U8N8_9STRA8.130e-1735.62Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2D5YPT1_9PROT1.350e-1330.7730S ribosomal protein S5 n=2 Tax=Bacteriovoracales... [more]
A0A1F3SJJ1_9PROT1.540e-1329.4530S ribosomal protein S5 n=1 Tax=Bdellovibrionales... [more]
A0A2E2EE63_9PROT3.530e-1332.1430S ribosomal protein S5 n=1 Tax=Halobacteriovorac... [more]
A0A2E2UBG6_9PROT5.310e-1330.7130S ribosomal protein S5 n=1 Tax=Halobacteriovorac... [more]
A0A1Y2FSQ1_PROLT6.440e-1335.34Ribosomal protein S5, C-terminal domain-domain-con... [more]
R7GKK4_9CLOT8.400e-1330.8230S ribosomal protein S5 n=3 Tax=Terrabacteria gro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88714contigM-pyrifera_M_contig88714:270..716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score69.3
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog515635.Dtur_0998
Preferred namerpsE
KEGG koko:K02988
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990145,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0098@1,COG0098@2
COG Functional cat.J
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size447
Cds size429
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816797.4644206-CDS-M-pyrifera_M_contig88714:269..6981622816797.4644206-CDS-M-pyrifera_M_contig88714:269..698Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88714 270..698 -
1692278184.3718288-CDS-M-pyrifera_M_contig88714:269..6981692278184.3718288-CDS-M-pyrifera_M_contig88714:269..698Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88714 270..698 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816797.48024-UTR-M-pyrifera_M_contig88714:698..7161622816797.48024-UTR-M-pyrifera_M_contig88714:698..716Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88714 699..716 -
1692278184.3866804-UTR-M-pyrifera_M_contig88714:698..7161692278184.3866804-UTR-M-pyrifera_M_contig88714:698..716Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88714 699..716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88714.20599.1prot_M-pyrifera_M_contig88714.20599.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88714 270..698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88714.20599.1

>prot_M-pyrifera_M_contig88714.20599.1 ID=prot_M-pyrifera_M_contig88714.20599.1|Name=mRNA_M-pyrifera_M_contig88714.20599.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
MEETAKALVLVGNRRGGIGYGVGRHKQADRAVELAISAAERDMIFISTYR
GQLYHDLVGKKNRVKVIVESRPPAYDTPRMHWIIETALELAGIRHAMATV
VGPKRRTTYTIVQALFEAFKQYQPYDASARMRGRRIVHVSDDR
back to top

mRNA from alignment at M-pyrifera_M_contig88714:270..716-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88714.20599.1 ID=mRNA_M-pyrifera_M_contig88714.20599.1|Name=mRNA_M-pyrifera_M_contig88714.20599.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig88714:270..716- (Macrocystis pyrifera P11B4 male)
CAGGTTGTGCGTGGAGGTATGGAAGAGACTGCCAAAGCATTGGTGTTGGT TGGGAATCGTCGTGGTGGAATTGGGTATGGAGTTGGTAGGCATAAACAGG CTGATAGGGCAGTGGAGTTGGCTATTAGTGCAGCTGAGAGAGACATGATT TTTATTTCAACGTATCGAGGACAATTGTACCATGACTTGGTTGGCAAGAA GAACAGAGTCAAAGTCATTGTAGAATCACGCCCTCCCGCATACGACACTC CTCGGATGCATTGGATTATTGAAACTGCGCTTGAATTAGCTGGAATTCGA CATGCAATGGCAACTGTTGTGGGACCAAAGAGACGAACAACGTACACTAT TGTGCAAGCACTCTTTGAGGCATTCAAACAATATCAACCCTATGATGCAT CTGCCAGAATGCGAGGTAGGAGAATTGTCCATGTTTCTGACGACCGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig88714:270..716-

>mRNA_M-pyrifera_M_contig88714.20599.1 ID=mRNA_M-pyrifera_M_contig88714.20599.1|Name=mRNA_M-pyrifera_M_contig88714.20599.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig88714:270..716- (Macrocystis pyrifera P11B4 male)
ATGGAAGAGACTGCCAAAGCATTGGTGTTGGTTGGGAATCGTCGTGGTGG
AATTGGGTATGGAGTTGGTAGGCATAAACAGGCTGATAGGGCAGTGGAGT
TGGCTATTAGTGCAGCTGAGAGAGACATGATTTTTATTTCAACGTATCGA
GGACAATTGTACCATGACTTGGTTGGCAAGAAGAACAGAGTCAAAGTCAT
TGTAGAATCACGCCCTCCCGCATACGACACTCCTCGGATGCATTGGATTA
TTGAAACTGCGCTTGAATTAGCTGGAATTCGACATGCAATGGCAACTGTT
GTGGGACCAAAGAGACGAACAACGTACACTATTGTGCAAGCACTCTTTGA
GGCATTCAAACAATATCAACCCTATGATGCATCTGCCAGAATGCGAGGTA
GGAGAATTGTCCATGTTTCTGACGACCGTATGGAAGAGACTGCCAAAGCA
TTGGTGTTGGTTGGGAATCGTCGTGGTGGAATTGGGTATGGAGTTGGTAG
GCATAAACAGGCTGATAGGGCAGTGGAGTTGGCTATTAGTGCAGCTGAGA
GAGACATGATTTTTATTTCAACGTATCGAGGACAATTGTACCATGACTTG
GTTGGCAAGAAGAACAGAGTCAAAGTCATTGTAGAATCACGCCCTCCCGC
ATACGACACTCCTCGGATGCATTGGATTATTGAAACTGCGCTTGAATTAG
CTGGAATTCGACATGCAATGGCAACTGTTGTGGGACCAAAGAGACGAACA
ACGTACACTATTGTGCAAGCACTCTTTGAGGCATTCAAACAATATCAACC
CTATGATGCATCTGCCAGAATGCGAGGTAGGAGAATTGTCCATGTTTCTG
ACGACCGT
back to top