mRNA_M-pyrifera_M_contig88644.20583.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88644.20583.1
Unique NamemRNA_M-pyrifera_M_contig88644.20583.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88644.20583.1 vs. uniprot
Match: A0A6B2L527_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L527_9EUKA)

HSP 1 Score: 118 bits (296), Expect = 1.640e-28
Identity = 67/177 (37.85%), Postives = 99/177 (55.93%), Query Frame = 1
Query:    1 AFYFYP-NGNAHPAVKVPSALNNMLVVDGTRVVHGVERYKPDFRPIARLDKDKPNSLQYQGDHLWHLISDGEVVGMFATKDLRVSLAWRERCFKDQDEMRRFHNAPN---MTVDHILDTFHQDLVKRGRLQ-QGQPRPHPREFALLILDEYARYPVDHATQSSLVPWNYCILPRLFP 516
            +F F+  NG A      P + N   VVDG++VVH    Y+    P   L   +P++L Y+GD  W + +DGEV    +  DLRVS+ +R RCF+D +E RRF   P    +T++ +L     DLVKRG L+ + +      +  +++L  Y RYP+    +  LVP+NYC LPRL+P
Sbjct:  234 SFVFWTDNGRAKAMAPAPRSAN---VVDGSKVVHAAAVYRAGVVPPV-LRPSEPHALVYEGDGRWSIRTDGEVRSRLSDDDLRVSIVYRARCFRDAEEARRFKELPESERLTLEGVLGVLKADLVKRGVLKAEEREGVSAFDLGMMLLKTYTRYPLP---EKGLVPFNYCALPRLYP 403          
BLAST of mRNA_M-pyrifera_M_contig88644.20583.1 vs. uniprot
Match: A0A553PRN0_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PRN0_TIGCA)

HSP 1 Score: 113 bits (283), Expect = 1.080e-26
Identity = 57/172 (33.14%), Postives = 95/172 (55.23%), Query Frame = 1
Query:    1 AFYFYPNGNAHPAVKVPSALNNMLVVDGTRVVHGVERYKPDFRPIARLDKDKPNSLQYQGDH-LWHLIS-DGEVVGMFATKDLRVSLAWRERCFKDQDEMRRFH-NAPNMTVDHILDTFHQDLVKRGRLQQGQPRPHPREFALLILDEYARYPVDHATQSSLVPWNYCILPR 507
            +F+ YP+G   P    PS  N   V+DG +V+HGV R+ P  R    + K     +  +G    W L++ D EV+G +   +LR++L WR  CF+ +++  +++  +     +  L    +DL KR  L Q Q RP   +FAL+++ EY +YP+D+  +++  P NYC+LP 
Sbjct:  217 SFFLYPDGPGGPVTSFPSNANTGSVLDGIKVIHGVNRFMPG-RVAPNIGKRVAKLVLDEGSQDTWTLVNEDQEVLGKYNMNELRITLVWRSLCFESEEQRSQWNPKSSTFAAEDALQALEKDLRKRNVLAQDQARPEMLDFALMLIKEYIKYPIDNF-ENAWFPLNYCVLPN 386          
BLAST of mRNA_M-pyrifera_M_contig88644.20583.1 vs. uniprot
Match: E4XZE0_OIKDI (Uncharacterized protein n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4XZE0_OIKDI)

HSP 1 Score: 108 bits (269), Expect = 8.090e-26
Identity = 56/172 (32.56%), Postives = 93/172 (54.07%), Query Frame = 1
Query:    4 FYFYPNGNAHPAVKVPSALNNMLVVDGTRVVHGVERYKPDFRPIARLDKDKPNSLQYQGDHLWHLISDGEVVGMFATKDLRVSLAWRERCFKDQDEMRRF--HNAPNMTVDH--ILDTFHQDLVKRGRL--QQGQPRPHPREFALLILDEYARYPVDHATQSSLVPWNYCIL 501
            + FYPNG    A  +P      +++DG R++HGVER  P +   A + K   N ++YQG++ W+++++ ++V  F T + R++  WR  CF+ ++E  +F  H      + H  I +    DL KRG+L   +G     P+ FA L+   Y +YP+D     +  P+NYC L
Sbjct:   26 YVFYPNGPGASAQSLPPKRGQAIMMDGGRMIHGVERTGPGYHS-AHMIKGHFNRIEYQGNNTWYVMANDDLVDTFKTDEFRITFVWRSLCFRSEEEKIKFDKHIEEKEFIPHEEIFEKLEADLRKRGKLGENKGIKTMGPKAFAKLLQHVYMQYPLD--VPDAWFPFNYCAL 194          
BLAST of mRNA_M-pyrifera_M_contig88644.20583.1 vs. uniprot
Match: A0A814HMA8_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814HMA8_9BILA)

HSP 1 Score: 105 bits (263), Expect = 1.010e-23
Identity = 64/178 (35.96%), Postives = 96/178 (53.93%), Query Frame = 1
Query:    4 FYFYPN-GNAHPAVKVPSALNNMLVVDGTRVVHGVERYKPDFRPIARLDKDKPNSLQYQGDH-LWHLISDGEV-VGMFATKDLRVSLAWRERCFKDQDEMRRFHNAPN---MTVDHILDTFHQDLVKRGR-LQQGQPRPHPREFALLILDEYARYPVDHATQSSLVPWNYCILPRLFP 516
            FYFYP        V   S  N+ L+VDGT+VVHGVER+K +F     L+K+K   L Y+ +   W L    +  +  +   DLRVSL WR  CFKD DE  ++ N  N   ++V+ +LD F  D+  R + L +        EF + +++EY+ Y   +  Q+ L  +NYC++P + P
Sbjct:  246 FYFYPYVEEKEKFVLAKSEYNSALLVDGTQVVHGVERFKSEFEQPP-LEKNKKYYLSYEANEDSWGLYDQNDKKIKEYKNDDLRVSLVWRVHCFKDMDEKVKYDNQKNDDRLSVETVLDIFKNDMKARNKNLDENMSN---LEFLIKLIEEYSVY--SNKIQNGLPVFNYCLIPLVMP 417          
BLAST of mRNA_M-pyrifera_M_contig88644.20583.1 vs. uniprot
Match: A0A534XA98_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534XA98_9DELT)

HSP 1 Score: 89.4 bits (220), Expect = 4.610e-18
Identity = 49/151 (32.45%), Postives = 85/151 (56.29%), Query Frame = 1
Query:    4 FYFYPNGNAHPAVKVPSALNNMLVVDGTRVVHGVERYKPDFRPIARLDKDKPNSLQYQGDHLWHLISDGE-VVGMFATKDLRVSLAWRERCFKDQDEMRRFH-NAPNMTVDHILDTFHQDLVKRGRLQQGQPRPHPREFALLILDEYARYP 450
            F FYP G   PA  +P+  N  +++D   V HGV+  + D  P+  L   +P  ++ + DH   L+ DG+ VV  +   ++R S++W+  CF D +E R +  +  ++ ++ I+D   +DL  RGRL++   RP     AL+++DEY ++P
Sbjct:  186 FAFYPQGGDGPAATIPARTNTGIILDTDSVFHGVDPVESDS-PLPAL---RPG-MRLRWDHGRWLVHDGDAVVARYPWDEIRFSISWKAYCFTDAEERRAWREHREDLVLERIVDRLVEDLRARGRLERE--RPDQTSLALMLIDEYVKFP 329          
BLAST of mRNA_M-pyrifera_M_contig88644.20583.1 vs. uniprot
Match: A0A6G0V1A0_9BILA (Uncharacterized protein n=1 Tax=Halicephalobus sp. NKZ332 TaxID=2598192 RepID=A0A6G0V1A0_9BILA)

HSP 1 Score: 84.7 bits (208), Expect = 4.420e-16
Identity = 49/179 (27.37%), Postives = 83/179 (46.37%), Query Frame = 1
Query:    4 FYFYPNGNAHPAVKVPSALNNMLVVDGTRVVHGVERYKPDFRPIARLDKDKPNSLQYQGDHLWHLISDGEVVGMFATKDLRVSLAWRERCFKDQDEMRRFHNAPNMTVDH-------ILDTFHQDLVKRGRLQQGQ-PRPHPREFALLILDEYARYPVDHATQSSLVPWNYCILPRLFP 516
            F +YP  +  P    P    +  +VDG + +H    YK    P   L K   N L+Y G+  W L S+   +  + TKDLR+++ +R RCF+ + +   +         H       IL+    +L KR  +           E A++ ++E+ RYP+      +++P+NYC+L  +FP
Sbjct:  252 FAYYPKNDIRPTYVQPFP-RSATIVDGAKTIHAATLYKQKNTPPI-LPKSADNVLEYVGNDSWTLFSNKNPLRSYKTKDLRITVVYRARCFESEAKKEAYKKWFTTAEKHEVRPVQEILNELKTELSKRKNIPVSDLDGISAVELAIMFVEEFIRYPLPG---KAMIPYNYCVLDTMFP 425          
BLAST of mRNA_M-pyrifera_M_contig88644.20583.1 vs. uniprot
Match: X6M3J5_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6M3J5_RETFI)

HSP 1 Score: 79.7 bits (195), Expect = 1.150e-15
Identity = 46/156 (29.49%), Postives = 83/156 (53.21%), Query Frame = 1
Query:   94 VHGVERYKPDFRPIARLDKDKPNSLQY-QGDHLWHLISDGEVVGM-FATKDLRVSLAWRERCFKDQDEMRRFHN---APNMTVDHILDTFHQDLVKRGRLQQGQPR----PHPR------EFALLILDEYARYPVDHATQSSLVPWNYCILPRLFP 516
            +H V  ++P   P++  DKD   +L+Y + D  WH   +    G  +   ++R S+A+R  CFK+++E  +F        +T+D ++D   ++L+ +G + + + R    P+ +      E  LL+LD Y + P  H    S +P+NYC+L +LFP
Sbjct:    1 MHCVVCFRPHIPPLS-FDKDASAALKYNKSDKKWHAFVNNNATGAEYRWNEIRASVAYRGWCFKNKEEADKFDPKEFTSKLTLDMVIDRLTENLISKGLVTREKVRELKQPNTKDKNNAYELGLLLLDNYIKLPYPHG---SYIPYNYCLLFKLFP 152          
BLAST of mRNA_M-pyrifera_M_contig88644.20583.1 vs. uniprot
Match: A0A812GB88_9DINO (FolD protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812GB88_9DINO)

HSP 1 Score: 72.0 bits (175), Expect = 1.070e-11
Identity = 33/97 (34.02%), Postives = 58/97 (59.79%), Query Frame = 1
Query:    4 FYFYPNGNAHPAVKVPSALNNMLVVDGTRVVHGVERYKPDFRPIARLDKDKPNSLQYQGDHLWHLISDGEVVGMFATKDLRVSLAWRERCFKDQDEM 294
            F +Y   +A P   +   L+  + VDG++ +H    ++P  +    LDKDK N+L Y GD  W L S+GEV+ ++ + DLR+++ +R RCF  ++++
Sbjct:  257 FLYYDQNSATPKAVLSKPLSG-VAVDGSKTLHAAGVFRPSVK-APLLDKDKDNALFYVGDEKWQLRSNGEVLQIYNSSDLRMTIVYRARCFASEEDL 351          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88644.20583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6B2L527_9EUKA1.640e-2837.85Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A553PRN0_TIGCA1.080e-2633.14Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
E4XZE0_OIKDI8.090e-2632.56Uncharacterized protein n=1 Tax=Oikopleura dioica ... [more]
A0A814HMA8_9BILA1.010e-2335.96Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A534XA98_9DELT4.610e-1832.45Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A6G0V1A0_9BILA4.420e-1627.37Uncharacterized protein n=1 Tax=Halicephalobus sp.... [more]
X6M3J5_RETFI1.150e-1529.49Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]
A0A812GB88_9DINO1.070e-1134.02FolD protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88644contigM-pyrifera_M_contig88644:301..816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue4.3e-25
Seed eggNOG ortholog946362.XP_004995839.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CI4G@1,2SEN1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size516
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.8096895-CDS-M-pyrifera_M_contig88644:300..8161622816796.8096895-CDS-M-pyrifera_M_contig88644:300..816Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88644 301..816 -
1692278184.009409-CDS-M-pyrifera_M_contig88644:300..8161692278184.009409-CDS-M-pyrifera_M_contig88644:300..816Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88644 301..816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88644.20583.1prot_M-pyrifera_M_contig88644.20583.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88644 301..816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88644.20583.1

>prot_M-pyrifera_M_contig88644.20583.1 ID=prot_M-pyrifera_M_contig88644.20583.1|Name=mRNA_M-pyrifera_M_contig88644.20583.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=172bp
AFYFYPNGNAHPAVKVPSALNNMLVVDGTRVVHGVERYKPDFRPIARLDK
DKPNSLQYQGDHLWHLISDGEVVGMFATKDLRVSLAWRERCFKDQDEMRR
FHNAPNMTVDHILDTFHQDLVKRGRLQQGQPRPHPREFALLILDEYARYP
VDHATQSSLVPWNYCILPRLFP
back to top

mRNA from alignment at M-pyrifera_M_contig88644:301..816-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88644.20583.1 ID=mRNA_M-pyrifera_M_contig88644.20583.1|Name=mRNA_M-pyrifera_M_contig88644.20583.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig88644:301..816- (Macrocystis pyrifera P11B4 male)
GCCTTCTACTTCTACCCCAACGGAAACGCGCACCCAGCGGTGAAAGTGCC TTCGGCGCTCAACAACATGCTGGTCGTCGATGGAACTAGGGTGGTGCATG GCGTGGAACGGTACAAGCCAGACTTCAGACCCATCGCCAGACTCGACAAG GACAAGCCGAATTCGCTCCAGTACCAAGGAGACCACCTGTGGCACCTCAT CAGCGATGGAGAAGTGGTTGGGATGTTCGCAACAAAAGACCTCAGAGTCT CGCTCGCATGGAGGGAACGGTGCTTCAAGGACCAAGACGAAATGCGCAGA TTCCACAATGCACCCAACATGACCGTCGACCACATCCTTGACACCTTCCA CCAAGACCTCGTCAAGAGGGGCAGGCTCCAGCAAGGACAGCCGAGACCAC ACCCTAGGGAGTTTGCTCTCCTCATCCTCGATGAATACGCAAGGTACCCA GTGGACCACGCAACCCAGTCCTCCCTCGTCCCTTGGAACTACTGCATCCT CCCAAGACTCTTCCCA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig88644:301..816-

>mRNA_M-pyrifera_M_contig88644.20583.1 ID=mRNA_M-pyrifera_M_contig88644.20583.1|Name=mRNA_M-pyrifera_M_contig88644.20583.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1032bp|location=Sequence derived from alignment at M-pyrifera_M_contig88644:301..816- (Macrocystis pyrifera P11B4 male)
GCCTTCTACTTCTACCCCAACGGAAACGCGCACCCAGCGGTGAAAGTGCC
TTCGGCGCTCAACAACATGCTGGTCGTCGATGGAACTAGGGTGGTGCATG
GCGTGGAACGGTACAAGCCAGACTTCAGACCCATCGCCAGACTCGACAAG
GACAAGCCGAATTCGCTCCAGTACCAAGGAGACCACCTGTGGCACCTCAT
CAGCGATGGAGAAGTGGTTGGGATGTTCGCAACAAAAGACCTCAGAGTCT
CGCTCGCATGGAGGGAACGGTGCTTCAAGGACCAAGACGAAATGCGCAGA
TTCCACAATGCACCCAACATGACCGTCGACCACATCCTTGACACCTTCCA
CCAAGACCTCGTCAAGAGGGGCAGGCTCCAGCAAGGACAGCCGAGACCAC
ACCCTAGGGAGTTTGCTCTCCTCATCCTCGATGAATACGCAAGGTACCCA
GTGGACCACGCAACCCAGTCCTCCCTCGTCCCTTGGAACTACTGCATCCT
CCCAAGACTCTTCCCAGCCTTCTACTTCTACCCCAACGGAAACGCGCACC
CAGCGGTGAAAGTGCCTTCGGCGCTCAACAACATGCTGGTCGTCGATGGA
ACTAGGGTGGTGCATGGCGTGGAACGGTACAAGCCAGACTTCAGACCCAT
CGCCAGACTCGACAAGGACAAGCCGAATTCGCTCCAGTACCAAGGAGACC
ACCTGTGGCACCTCATCAGCGATGGAGAAGTGGTTGGGATGTTCGCAACA
AAAGACCTCAGAGTCTCGCTCGCATGGAGGGAACGGTGCTTCAAGGACCA
AGACGAAATGCGCAGATTCCACAATGCACCCAACATGACCGTCGACCACA
TCCTTGACACCTTCCACCAAGACCTCGTCAAGAGGGGCAGGCTCCAGCAA
GGACAGCCGAGACCACACCCTAGGGAGTTTGCTCTCCTCATCCTCGATGA
ATACGCAAGGTACCCAGTGGACCACGCAACCCAGTCCTCCCTCGTCCCTT
GGAACTACTGCATCCTCCCAAGACTCTTCCCA
back to top