prot_M-pyrifera_M_contig109824.2055.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig109824.2055.1
Unique Nameprot_M-pyrifera_M_contig109824.2055.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length64
Homology
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Match: UPI000DA6AC56 (helix-turn-helix domain-containing protein n=1 Tax=Hymenobacter sediminis TaxID=2218621 RepID=UPI000DA6AC56)

HSP 1 Score: 67.4 bits (163), Expect = 2.740e-13
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 0
Query:    1 GQRLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAETLEVSYSELFEF 61
            GQRL++VR + G +QE LA  AEL  SQI RIE+G+INT++STV  IA TL+V   ELF+F
Sbjct:   14 GQRLRQVRQSKGFTQESLAAAAELEFSQIGRIERGVINTSLSTVFVIARTLQVDVRELFDF 74          
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Match: UPI0018800398 (XRE family transcriptional regulator n=2 Tax=Flavobacterium sp. KB82 TaxID=2082725 RepID=UPI0018800398)

HSP 1 Score: 67.0 bits (162), Expect = 4.190e-13
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 0
Query:    3 RLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAETLEVSYSELFEFK 62
            RLK++R+  G+SQ+ELA ++E+S SQI RIE   IN T+ST+  IA TLEVS SELF+FK
Sbjct:   24 RLKELRSEKGVSQQELANRSEISLSQIARIETVKINPTVSTIFKIARTLEVSPSELFDFK 83          
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Match: UPI0019524002 (Helix-turn-helix transcriptional regulator n=1 Tax=Flavobacterium macrobrachii TaxID=591204 RepID=UPI0019524002)

HSP 1 Score: 65.1 bits (157), Expect = 1.570e-12
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 0
Query:    1 GQRLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAETLEVSYSELFEFK 62
            G+ LK++R N  +SQE LA  A++  SQI RIE+G INTTISTV  +AE L++S  ELF+F+
Sbjct:    8 GENLKQIRLNKNLSQEVLAFTADIPISQIGRIERGEINTTISTVKVLAEALDISVKELFDFE 69          
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Match: A0A7K1G9T6_9FLAO (Helix-turn-helix domain-containing protein n=2 Tax=Flavobacterium TaxID=237 RepID=A0A7K1G9T6_9FLAO)

HSP 1 Score: 65.1 bits (157), Expect = 1.920e-12
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 0
Query:    3 RLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAETLEVSYSELFEFK 62
            RLK++R+  G+SQEELA ++E++ SQI RIE   IN T+ST+  IA TLEV  SELF F+
Sbjct:   13 RLKEIRSEKGLSQEELAYRSEITLSQIARIETIRINPTVSTIFKIARTLEVPLSELFNFE 72          
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Match: A0A5Q3QU73_9FLAO (Helix-turn-helix domain-containing protein n=2 Tax=unclassified Flavobacterium TaxID=196869 RepID=A0A5Q3QU73_9FLAO)

HSP 1 Score: 64.7 bits (156), Expect = 3.590e-12
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 0
Query:    3 RLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAETLEVSYSELFEFK 62
            RLK++R+  G+SQEELA ++EL+ SQI RIE   IN TIST+  IA TLEV   ELF F+
Sbjct:   24 RLKEIRSEKGISQEELAYRSELTLSQIARIETVRINPTISTIFKIARTLEVPLQELFNFE 83          
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Match: A0A2V4C2P6_9FLAO (XRE family transcriptional regulator n=1 Tax=Flavobacterium hydrophilum TaxID=2211445 RepID=A0A2V4C2P6_9FLAO)

HSP 1 Score: 64.3 bits (155), Expect = 5.100e-12
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 0
Query:    3 RLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAETLEVSYSELFEFK 62
            RLK++R+  G++QEELA ++E++ SQI RIE   IN T+ST+  IA TLEV  SELF F+
Sbjct:   24 RLKEIRSEKGLTQEELAYRSEITLSQIARIETVRINPTVSTIFKIARTLEVPLSELFNFE 83          
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Match: UPI000DAE1708 (helix-turn-helix domain-containing protein n=1 Tax=Flavobacterium ginsenosidimutans TaxID=687844 RepID=UPI000DAE1708)

HSP 1 Score: 64.3 bits (155), Expect = 5.100e-12
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 0
Query:    3 RLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAETLEVSYSELFEFK 62
            RLK+VR    +SQEELAL++EL+ SQI RIE   IN TISTV  IA TL+V  SELF F+
Sbjct:   24 RLKEVRAEKKISQEELALRSELTLSQIARIETVRINPTISTVFKIARTLDVPLSELFNFE 83          
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Match: UPI001B266CE8 (Helix-turn-helix transcriptional regulator n=1 Tax=Flavobacterium sp. TaxID=239 RepID=UPI001B266CE8)

HSP 1 Score: 63.9 bits (154), Expect = 7.230e-12
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 0
Query:    3 RLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAETLEVSYSELFEFK 62
            RLK++R+  G+SQEELA ++E++ SQI RIE   IN T+ST+  IA TLE+  SELF F+
Sbjct:   24 RLKEIRSEKGISQEELAYRSEITLSQIARIETVRINPTVSTLFKIARTLEIPLSELFNFE 83          
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Match: J0RZ75_9FLAO (Helix-turn-helix domain-containing protein n=1 Tax=Flavobacterium sp. F52 TaxID=1202532 RepID=J0RZ75_9FLAO)

HSP 1 Score: 63.5 bits (153), Expect = 1.030e-11
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 0
Query:    3 RLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAETLEVSYSELFEFK 62
            RLK++R+  G+SQEELA +AE++ SQI RIE   IN T+STV  IA  L++S SE+F F+
Sbjct:   24 RLKEIRSEKGVSQEELAYRAEITLSQIARIETVKINPTVSTVFKIARALDISPSEIFNFE 83          
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Match: A0A1Y2RGQ8_9BACT (HTH cro/C1-type domain-containing protein n=1 Tax=Chitinophagaceae bacterium IBVUCB2 TaxID=1985174 RepID=A0A1Y2RGQ8_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.080e-11
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 0
Query:    1 GQRLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAETLEVSYSELFEFK 62
            G++L+K+R   G+S  + A +A++  SQ+ +IE+G+ NTTISTVL +A+TLEV  SELF FK
Sbjct:   14 GKQLRKLREVKGISMRQFAAEADIEYSQLSKIERGVTNTTISTVLVLAKTLEVEVSELFMFK 75          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000DA6AC562.740e-1359.02helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI00188003984.190e-1360.00XRE family transcriptional regulator n=2 Tax=Flavo... [more]
UPI00195240021.570e-1254.84Helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A7K1G9T6_9FLAO1.920e-1256.67Helix-turn-helix domain-containing protein n=2 Tax... [more]
A0A5Q3QU73_9FLAO3.590e-1258.33Helix-turn-helix domain-containing protein n=2 Tax... [more]
A0A2V4C2P6_9FLAO5.100e-1255.00XRE family transcriptional regulator n=1 Tax=Flavo... [more]
UPI000DAE17085.100e-1261.67helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI001B266CE87.230e-1255.00Helix-turn-helix transcriptional regulator n=1 Tax... [more]
J0RZ75_9FLAO1.030e-1155.00Helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A1Y2RGQ8_9BACT1.080e-1151.61HTH cro/C1-type domain-containing protein n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001387Cro/C1-type helix-turn-helix domainSMARTSM00530mbf_short4coord: 3..58
e-value: 2.1E-12
score: 57.2
IPR001387Cro/C1-type helix-turn-helix domainPFAMPF12844HTH_19coord: 1..61
e-value: 1.2E-15
score: 57.3
IPR001387Cro/C1-type helix-turn-helix domainPROSITEPS50943HTH_CROC1coord: 4..58
score: 15.124
NoneNo IPR availableGENE3D1.10.260.40coord: 1..63
e-value: 2.9E-19
score: 70.6
NoneNo IPR availablePANTHERPTHR46797FAMILY NOT NAMEDcoord: 1..60
IPR010982Lambda repressor-like, DNA-binding domain superfamilySUPERFAMILY47413lambda repressor-like DNA-binding domainscoord: 1..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109824contigM-pyrifera_M_contig109824:411..602 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109824.2055.1mRNA_M-pyrifera_M_contig109824.2055.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig109824 411..602 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig109824.2055.1 ID=prot_M-pyrifera_M_contig109824.2055.1|Name=mRNA_M-pyrifera_M_contig109824.2055.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
GQRLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAET
LEVSYSELFEFKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001387Cro/C1-type_HTH
IPR010982Lambda_DNA-bd_dom_sf