mRNA_M-pyrifera_M_contig88017.20443.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88017.20443.1
Unique NamemRNA_M-pyrifera_M_contig88017.20443.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig88017.20443.1 vs. uniprot
Match: A0A7S4MNT8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MNT8_9EUKA)

HSP 1 Score: 144 bits (363), Expect = 1.120e-39
Identity = 69/104 (66.35%), Postives = 83/104 (79.81%), Query Frame = 1 
Query:   13 TVRHVQYDDWDDMRIPDDKETFVQLMHYVHEEHGSGCH-APLVVHCFGGAGRTGTFLAIHISLQRMMRIGGKAINVLELLGMMRNERAFLVQTQEQYKFCYRVI 321
            TV H+QYDDWDDMRIPD+KE F Q M+   ++     H  P+VVHCFGG GRTGTFL IH ++Q+M R+GGKAINVL++LGMMR ER+ LVQT EQYKFCYR+I
Sbjct:  248 TVTHLQYDDWDDMRIPDEKEVFYQFMYMTSKQQEETEHRGPMVVHCFGGVGRTGTFLVIHSTIQKMTRLGGKAINVLDILGMMREERSSLVQTAEQYKFCYRMI 351
[Close]
BLAST of mRNA_M-pyrifera_M_contig88017.20443.1 vs. uniprot
Match: A0A8I6XD57_HORVV (Uncharacterized protein n=3 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6XD57_HORVV)

HSP 1 Score: 90.1 bits (222), Expect = 1.950e-20
Identity = 43/109 (39.45%), Postives = 70/109 (64.22%), Query Frame = 1 
Query:   10 HTVRHVQYDDWDDMRIPDDKET---FVQLMHYVHEEHGSGCHAPLVVHCFGGAGRTGTFLAIHISLQRMMRIGGKAINVLELLGMMRNERAFLVQTQEQYKFCYRVILE 327
            HTV H+Q+  W D  +P+D  T    ++ ++YV ++H      P+V HC  G GRTG ++ IH +++R++R    A N++E +G  R++R  +VQT+EQYKFCY  I++
Sbjct:   66 HTVLHIQHSTWPDHGVPNDSSTVRKILKRLYYVGKDH------PIVAHCSAGIGRTGAYITIHNTVERILRGDQAATNLVETVGKFRSQRPGIVQTEEQYKFCYHAIVD 168
[Close]
BLAST of mRNA_M-pyrifera_M_contig88017.20443.1 vs. uniprot
Match: A0A446R566_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446R566_TRITD)

HSP 1 Score: 91.3 bits (225), Expect = 3.690e-20
Identity = 45/109 (41.28%), Postives = 68/109 (62.39%), Query Frame = 1 
Query:   10 HTVRHVQYDDWDDMRIPDDKET---FVQLMHYVHEEHGSGCHAPLVVHCFGGAGRTGTFLAIHISLQRMMRIGGKAINVLELLGMMRNERAFLVQTQEQYKFCYRVILE 327
            HTV H+Q+  W D  +PDD  T    ++ ++YV +EH      P+V HC  G GRTG ++ IH +++R++R    A N+ E +G  R++R  +VQT+EQYKFCY  I +
Sbjct:  147 HTVLHIQHSTWPDHGVPDDSSTVRKILKRLYYVSKEH------PVVAHCSAGIGRTGAYITIHNTVERILRGEQAATNLAETVGKFRSQRPGMVQTEEQYKFCYHAIAD 249
[Close]
BLAST of mRNA_M-pyrifera_M_contig88017.20443.1 vs. uniprot
Match: A0A3B6HWM0_WHEAT (Uncharacterized protein n=2 Tax=Triticum TaxID=4564 RepID=A0A3B6HWM0_WHEAT)

HSP 1 Score: 91.3 bits (225), Expect = 2.700e-19
Identity = 45/109 (41.28%), Postives = 68/109 (62.39%), Query Frame = 1 
Query:   10 HTVRHVQYDDWDDMRIPDDKET---FVQLMHYVHEEHGSGCHAPLVVHCFGGAGRTGTFLAIHISLQRMMRIGGKAINVLELLGMMRNERAFLVQTQEQYKFCYRVILE 327
            HTV H+Q+  W D  +PDD  T    ++ ++YV +EH      P+V HC  G GRTG ++ IH +++R++R    A N+ E +G  R++R  +VQT+EQYKFCY  I +
Sbjct:  345 HTVLHIQHSTWPDHGVPDDSSTVRKILKRLYYVSKEH------PVVAHCSAGIGRTGAYITIHNTVERILRGEQAATNLAETVGKFRSQRPGMVQTEEQYKFCYHAIAD 447
[Close]
BLAST of mRNA_M-pyrifera_M_contig88017.20443.1 vs. uniprot
Match: A0A8D1UDH7_PIG (Uncharacterized protein n=2 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1UDH7_PIG)

HSP 1 Score: 87.0 bits (214), Expect = 4.210e-19
Identity = 40/108 (37.04%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:    4 VTHTVRHVQYDDWDDMRIPDDKETFVQLMHYVHEEHGSGCHAPLVVHCFGGAGRTGTFLAIHISLQRMMRIGGKAINVLELLGMMRNERAFLVQTQEQYKFCYRVILE 327
            ++H V+H+Q+  W D   P   E F++ + YV + H +G   PL+VHC  G GRTG FL + +    + +    + N++ ++G MR +R  ++QT+EQY FCY+++LE
Sbjct:   82 ISHFVKHLQFTKWPDHGTPASAEDFIKYVRYVRKSHLTG---PLIVHCSAGVGRTGVFLCVDVVFCAIEK--SFSFNIMNIVGQMRQQRCGMIQTKEQYIFCYKIVLE 184
[Close]
BLAST of mRNA_M-pyrifera_M_contig88017.20443.1 vs. uniprot
Match: A0A2S3H677_9POAL (Uncharacterized protein n=2 Tax=Panicum hallii TaxID=206008 RepID=A0A2S3H677_9POAL)

HSP 1 Score: 87.8 bits (216), Expect = 9.400e-19
Identity = 41/109 (37.61%), Postives = 71/109 (65.14%), Query Frame = 1 
Query:   10 HTVRHVQYDDWDDMRIPDDKETFVQL---MHYVHEEHGSGCHAPLVVHCFGGAGRTGTFLAIHISLQRMMRIGGKAINVLELLGMMRNERAFLVQTQEQYKFCYRVILE 327
            H+V H++Y DW D  +P + +   Q+   +H++  EH      P+VVHC  G GRTGT++ IH +++R++    ++ +++E +   R++R  +VQT++QYKFCYRVI +
Sbjct:  160 HSVLHIEYPDWPDHGVPTNTDAVRQIWKRLHHIPTEH------PIVVHCSAGIGRTGTYITIHTTIERILLGDKRSYDIVETVKNFRSQRPGMVQTEQQYKFCYRVIAD 262
[Close]
BLAST of mRNA_M-pyrifera_M_contig88017.20443.1 vs. uniprot
Match: A0A2T7E5P8_9POAL (Uncharacterized protein n=2 Tax=Panicum TaxID=4539 RepID=A0A2T7E5P8_9POAL)

HSP 1 Score: 87.8 bits (216), Expect = 9.400e-19
Identity = 41/109 (37.61%), Postives = 71/109 (65.14%), Query Frame = 1 
Query:   10 HTVRHVQYDDWDDMRIPDDKETFVQL---MHYVHEEHGSGCHAPLVVHCFGGAGRTGTFLAIHISLQRMMRIGGKAINVLELLGMMRNERAFLVQTQEQYKFCYRVILE 327
            H+V H++Y DW D  +P + +   Q+   +H++  EH      P+VVHC  G GRTGT++ IH +++R++    ++ +++E +   R++R  +VQT++QYKFCYRVI +
Sbjct:  160 HSVLHIEYPDWPDHGVPTNTDAVRQIWKRLHHIPTEH------PIVVHCSAGIGRTGTYITIHTTIERILLGDKRSYDIVETVKNFRSQRPGMVQTEQQYKFCYRVIAD 262
[Close]
BLAST of mRNA_M-pyrifera_M_contig88017.20443.1 vs. uniprot
Match: A0A452FV78_CAPHI (Uncharacterized protein n=5 Tax=Bovidae TaxID=9895 RepID=A0A452FV78_CAPHI)

HSP 1 Score: 87.4 bits (215), Expect = 1.320e-18
Identity = 41/107 (38.32%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:    7 THTVRHVQYDDWDDMRIPDDKETFVQLMHYVHEEHGSGCHAPLVVHCFGGAGRTGTFLAIHISLQRMMRIGGKAINVLELLGMMRNERAFLVQTQEQYKFCYRVILE 327
            +H V+H+Q+ DW D   P   E F++ + YV + H +G   P+VVHC  G GRTG FL + +    +      + N++ ++G MR +R  ++QT+EQY FCY+++LE
Sbjct:  162 SHFVKHLQFTDWPDHGTPTSAEGFIKYVRYVRKSHLTG---PIVVHCSAGVGRTGVFLCVDVVFCAIEN--NFSFNIMNIVGQMREQRHGMIQTKEQYMFCYKIVLE 263
[Close]
BLAST of mRNA_M-pyrifera_M_contig88017.20443.1 vs. uniprot
Match: A0A6P7DHB9_SHEEP (tyrosine-protein phosphatase non-receptor type 20-like n=2 Tax=Bovidae TaxID=9895 RepID=A0A6P7DHB9_SHEEP)

HSP 1 Score: 85.5 bits (210), Expect = 1.400e-18
Identity = 40/107 (37.38%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:    7 THTVRHVQYDDWDDMRIPDDKETFVQLMHYVHEEHGSGCHAPLVVHCFGGAGRTGTFLAIHISLQRMMRIGGKAINVLELLGMMRNERAFLVQTQEQYKFCYRVILE 327
            +H V+H+Q+ DW D   P   E F++ + YV + H +G   P+VVHC  G GRTG FL + +    +      + +++ ++G MR +R  ++QT+EQY FCY+++LE
Sbjct:   75 SHFVKHLQFTDWPDHGTPTSAEGFIKYVRYVRKSHLTG---PIVVHCSAGVGRTGVFLCVDVVFCAIEN--NFSFDIMNIVGQMREQRHGMIQTKEQYMFCYKIVLE 176
[Close]
BLAST of mRNA_M-pyrifera_M_contig88017.20443.1 vs. uniprot
Match: A0A8C6E900_MOSMO (Protein tyrosine phosphatase non-receptor type 20 n=1 Tax=Moschus moschiferus TaxID=68415 RepID=A0A8C6E900_MOSMO)

HSP 1 Score: 85.5 bits (210), Expect = 1.780e-18
Identity = 40/107 (37.38%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:    7 THTVRHVQYDDWDDMRIPDDKETFVQLMHYVHEEHGSGCHAPLVVHCFGGAGRTGTFLAIHISLQRMMRIGGKAINVLELLGMMRNERAFLVQTQEQYKFCYRVILE 327
            +H V+H+Q+  W D   P   E F++ + YV + H +G   P+VVHC  G GRTG FL + +    + +    + N++ ++G MR +R  ++QT+EQY FCY+++LE
Sbjct:   86 SHFVKHLQFTSWPDHGTPASAEGFIKYVRYVRKSHLTG---PIVVHCSAGVGRTGVFLCVDVVFCAIEK--NFSFNIMNIVGQMREQRHGMIQTKEQYMFCYKIVLE 187
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88017.20443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4MNT8_9EUKA1.120e-3966.35Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A8I6XD57_HORVV1.950e-2039.45Uncharacterized protein n=3 Tax=Hordeum vulgare su... [more]
A0A446R566_TRITD3.690e-2041.28Uncharacterized protein n=1 Tax=Triticum turgidum ... [more]
A0A3B6HWM0_WHEAT2.700e-1941.28Uncharacterized protein n=2 Tax=Triticum TaxID=456... [more]
A0A8D1UDH7_PIG4.210e-1937.04Uncharacterized protein n=2 Tax=Sus scrofa TaxID=9... [more]
A0A2S3H677_9POAL9.400e-1937.61Uncharacterized protein n=2 Tax=Panicum hallii Tax... [more]
A0A2T7E5P8_9POAL9.400e-1937.61Uncharacterized protein n=2 Tax=Panicum TaxID=4539... [more]
A0A452FV78_CAPHI1.320e-1838.32Uncharacterized protein n=5 Tax=Bovidae TaxID=9895... [more]
A0A6P7DHB9_SHEEP1.400e-1837.38tyrosine-protein phosphatase non-receptor type 20-... [more]
A0A8C6E900_MOSMO1.780e-1837.38Protein tyrosine phosphatase non-receptor type 20 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88017contigM-pyrifera_M_contig88017:337..796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score94.0
Seed ortholog evalue4.7e-17
Seed eggNOG ortholog4565.Traes_4BS_5D6CC12BC.2
Preferred namePTP1
KEGG koko:K05696,ko:K16667,ko:K18032,ko:K18038,ko:K18039
KEGG Pathwayko04520,ko04910,ko04931,map04520,map04910,map04931
Hectar predicted targeting categoryother localisation
GOsGO:0000188,GO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0006464,GO:0006469,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019220,GO:0019222,GO:0019538,GO:0023051,GO:0023052,GO:0023057,GO:0031323,GO:0031324,GO:0031347,GO:0031348,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0033549,GO:0033550,GO:0033673,GO:0035335,GO:0035556,GO:0036211,GO:0042325,GO:0042326,GO:0042578,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043412,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045859,GO:0045936,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071900,GO:0071901,GO:0071944,GO:0080090,GO:0080134,GO:0140096,GO:1901564,GO:1902531,GO:1902532,GO:1990264
EggNOG free text desc.Protein tyrosine phosphatase, catalytic domain
EggNOG OGs37QR2@33090,3GCWV@35493,3IB39@38820,3M23D@4447,COG5599@1,KOG0789@2759
EC3.1.3.48
COG Functional cat.T
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko04516
Exons2
Model size327
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816789.474459-CDS-M-pyrifera_M_contig88017:336..6271622816789.474459-CDS-M-pyrifera_M_contig88017:336..627Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88017 337..627 +
1692278179.5357301-CDS-M-pyrifera_M_contig88017:336..6271692278179.5357301-CDS-M-pyrifera_M_contig88017:336..627Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88017 337..627 +
1622816789.491843-CDS-M-pyrifera_M_contig88017:760..7961622816789.491843-CDS-M-pyrifera_M_contig88017:760..796Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88017 761..796 +
1692278179.5501363-CDS-M-pyrifera_M_contig88017:760..7961692278179.5501363-CDS-M-pyrifera_M_contig88017:760..796Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88017 761..796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88017.20443.1prot_M-pyrifera_M_contig88017.20443.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88017 337..796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88017.20443.1

>prot_M-pyrifera_M_contig88017.20443.1 ID=prot_M-pyrifera_M_contig88017.20443.1|Name=mRNA_M-pyrifera_M_contig88017.20443.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
MVTHTVRHVQYDDWDDMRIPDDKETFVQLMHYVHEEHGSGCHAPLVVHCF
GGAGRTGTFLAIHISLQRMMRIGGKAINVLELLGMMRNERAFLVQTQEQY
KFCYRVILE
back to top

mRNA from alignment at M-pyrifera_M_contig88017:337..796+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88017.20443.1 ID=mRNA_M-pyrifera_M_contig88017.20443.1|Name=mRNA_M-pyrifera_M_contig88017.20443.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=460bp|location=Sequence derived from alignment at M-pyrifera_M_contig88017:337..796+ (Macrocystis pyrifera P11B4 male)
ATGGTCACCCACACTGTCCGCCACGTACAATATGATGACTGGGATGACAT
GCGCATTCCTGATGACAAGGAAACATTCGTTCAACTCATGCACTACGTGC
ACGAAGAGCATGGTAGTGGCTGCCATGCACCCTTGGTTGTACACTGCTTT
GGGGGGGCTGGTCGCACAGGAACGTTCCTTGCCATTCACATCAGTCTGCA
GAGAATGATGCGTATTGGAGGGAAGGCGATCAATGTGCTGGAGCTGCTGG
GCATGATGCGTAACGAACGCGCCTTCCTTGTCCAAACCCAGGTATGCCCT
TTTCCACCAGAAATACTCGCCAACAATTCTCGCCATTGTATTCGTGCCGT
GTAGTTGCCCATTCTCTCCCTCTCGTCTTGCAGTCGTTCTTTCACGCACT
TCGCGTCATCTTACACTTGACCAGGAGCAGTACAAGTTTTGCTATCGAGT
CATATTAGAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig88017:337..796+

>mRNA_M-pyrifera_M_contig88017.20443.1 ID=mRNA_M-pyrifera_M_contig88017.20443.1|Name=mRNA_M-pyrifera_M_contig88017.20443.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig88017:337..796+ (Macrocystis pyrifera P11B4 male)
ATGGTCACCCACACTGTCCGCCACGTACAATATGATGACTGGGATGACAT
GCGCATTCCTGATGACAAGGAAACATTCGTTCAACTCATGCACTACGTGC
ACGAAGAGCATGGTAGTGGCTGCCATGCACCCTTGGTTGTACACTGCTTT
GGGGGGGCTGGTCGCACAGGAACGTTCCTTGCCATTCACATCAGTCTGCA
GAGAATGATGCGTATTGGAGGGAAGGCGATCAATGTGCTGGAGCTGCTGG
GCATGATGCGTAACGAACGCGCCTTCCTTGTCCAAACCCAGATGGTCACC
CACACTGTCCGCCACGTACAATATGATGACTGGGATGACATGCGCATTCC
TGATGACAAGGAAACATTCGTTCAACTCATGCACTACGTGCACGAAGAGC
ATGGTAGTGGCTGCCATGCACCCTTGGTTGTACACTGCTTTGGGGGGGCT
GGTCGCACAGGAACGTTCCTTGCCATTCACATCAGTCTGCAGAGAATGAT
GCGTATTGGAGGGAAGGCGATCAATGTGCTGGAGCTGCTGGGCATGATGC
GTAACGAACGCGCCTTCCTTGTCCAAACCCAGGAGCAGTACAAGTTTTGC
TATCGAGTCATATTAGAAGAGCAGTACAAGTTTTGCTATCGAGTCATATT
AGAA
back to top