mRNA_M-pyrifera_M_contig87872.20415.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87872.20415.1
Unique NamemRNA_M-pyrifera_M_contig87872.20415.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87872.20415.1 vs. uniprot
Match: A0A2E7D6D4_9PLAN (Type-5 uracil-DNA glycosylase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7D6D4_9PLAN)

HSP 1 Score: 306 bits (783), Expect = 3.100e-103
Identity = 133/205 (64.88%), Postives = 156/205 (76.10%), Query Frame = 1
Query:    1 RAWNALNQQIVDCERCPRLRDHCRHVAKEKRKAYMDWEYWGKPVPNFGASQANLLIVGLAPAAHGANRTGRMFTGDRSGDWLYAALHDAGFANAATSVSADDSLALFDCVITAACHCAPPANRPTRGELLECRPWLDSTIDLLAPKVLLGLGQIGWKSALDAARRRGWHAGKLPKFAHGAVAPLNDRRWLVASYHPSQQNTFTGK 615
            R WN LN  IV C+RCPRL +HC+ +A+EKRKAY+DW+YWGKPV NFG  +A+LL+VGLAP AHGANRTGRMFTGDRSGDWLY ALH  GFAN A S   DD L L +C IT ACHCAPP N+PTR E+  CR W D TI LL PKV L LGQIGW++ +D A+ +GW+ GK+PKFAH A        WL+ S+HPSQQNTFTG+
Sbjct:    4 RQWNELNAHIVACDRCPRLLEHCQKIAREKRKAYLDWDYWGKPVENFGDPKADLLVVGLAPGAHGANRTGRMFTGDRSGDWLYRALHRVGFANQAESTDRDDGLKLINCAITNACHCAPPDNKPTREEIANCRDWFDQTISLLKPKVFLALGQIGWRAVIDQAKHQGWYEGKIPKFAHAASVQFASGHWLLGSFHPSQQNTFTGR 208          
BLAST of mRNA_M-pyrifera_M_contig87872.20415.1 vs. uniprot
Match: A0A517Z571_9PLAN (Type-5 uracil-DNA glycosylase n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517Z571_9PLAN)

HSP 1 Score: 305 bits (780), Expect = 2.090e-102
Identity = 136/203 (67.00%), Postives = 157/203 (77.34%), Query Frame = 1
Query:    7 WNALNQQIVDCERCPRLRDHCRHVAKEKRKAYMDWEYWGKPVPNFGASQANLLIVGLAPAAHGANRTGRMFTGDRSGDWLYAALHDAGFANAATSVSADDSLALFDCVITAACHCAPPANRPTRGELLECRPWLDSTIDLLAPKVLLGLGQIGWKSALDAARRRGWHAGKLPKFAHGAVAPLNDRRWLVASYHPSQQNTFTGK 615
            W +LN++IV C RCPRLRDHCR +AK KRKAY D  YWGKPVPNFG + A LLIVGLAP AHGANRTGRMFTGDRSG WLY ALH AGFA+  +  +ADD L L DC ITAACHCAPP N+P R EL+ C  W D+T+DLL  +V L LGQIGWK+ ++ ARRR W+AG +PKF HG    L + RWL+ SYHPSQQNTFTG+
Sbjct:   30 WTSLNRRIVRCRRCPRLRDHCREIAKTKRKAYADCTYWGKPVPNFGDAVARLLIVGLAPGAHGANRTGRMFTGDRSGQWLYRALHRAGFASQPSWETADDGLELIDCAITAACHCAPPDNKPKRDELIACSEWFDTTVDLLTVRVFLALGQIGWKATIELARRREWYAGPIPKFGHGEAFELGEGRWLLGSYHPSQQNTFTGR 232          
BLAST of mRNA_M-pyrifera_M_contig87872.20415.1 vs. uniprot
Match: A0A3A0E443_9BACT (Type-5 uracil-DNA glycosylase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0E443_9BACT)

HSP 1 Score: 303 bits (777), Expect = 2.540e-102
Identity = 137/205 (66.83%), Postives = 161/205 (78.54%), Query Frame = 1
Query:    1 RAWNALNQQIVDCERCPRLRDHCRHVAKEKRKAYMDWEYWGKPVPNFGASQANLLIVGLAPAAHGANRTGRMFTGDRSGDWLYAALHDAGFANAATSVSADDSLALFDCVITAACHCAPPANRPTRGELLECRPWLDSTIDLLAPKVLLGLGQIGWKSALDAARRRGWHAGKLPKFAHGAVAPLNDRRWLVASYHPSQQNTFTGK 615
            RAWNALN++I+ C RCPRL  +CR VA  KR ++ DW YWG+PVPNFG  +A LL+VGLAPAAHGANRTGRMFTGDRSGDWLY AL+ AGFAN  TS SA+D LAL DC ITA CHCAPP N+P   E+  CR WLD+T D   PKV++ LGQI W++A+DA RRRGWH+G++PKFAHGA   L   R L+ SYHPSQQNTFTG+
Sbjct:    5 RAWNALNRRIIACRRCPRLIAYCRQVAATKRASFADWTYWGRPVPNFGDPRARLLVVGLAPAAHGANRTGRMFTGDRSGDWLYRALYRAGFANQPTSESANDGLALRDCAITAVCHCAPPENKPLPCEIAACREWLDATFDATGPKVVVALGQIAWRAAVDALRRRGWHSGRVPKFAHGARVELAGGRTLLGSYHPSQQNTFTGR 209          
BLAST of mRNA_M-pyrifera_M_contig87872.20415.1 vs. uniprot
Match: A0A6I6AH62_9PLAN (Type-5 uracil-DNA glycosylase n=8 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AH62_9PLAN)

HSP 1 Score: 301 bits (770), Expect = 2.750e-101
Identity = 135/203 (66.50%), Postives = 155/203 (76.35%), Query Frame = 1
Query:    7 WNALNQQIVDCERCPRLRDHCRHVAKEKRKAYMDWEYWGKPVPNFGASQANLLIVGLAPAAHGANRTGRMFTGDRSGDWLYAALHDAGFANAATSVSADDSLALFDCVITAACHCAPPANRPTRGELLECRPWLDSTIDLLAPKVLLGLGQIGWKSALDAARRRGWHAGKLPKFAHGAVAPLNDRRWLVASYHPSQQNTFTGK 615
            WN LN+ I +C+ C RLR HC  +A EKRKA++DW+YWGKPVPNFG SQA LLIVGLAPAAHGANRTGRMFTGDRSGDWLY ALH AGFA    +VS+DD L L +C ITA CHCAPPAN+PTR E+  C PWL+ T+D+L  KV L LGQIGWK+ LD  +R+   +GK P F HGA     D  WLV SYHPSQQNTFTG+
Sbjct:    6 WNQLNRNITNCDLCDRLRTHCLKIAAEKRKAFLDWDYWGKPVPNFGDSQAELLIVGLAPAAHGANRTGRMFTGDRSGDWLYRALHKAGFATQPEAVSSDDGLELINCAITATCHCAPPANKPTREEIENCHPWLEQTVDMLPVKVFLALGQIGWKAVLDFKKRQDRLSGKRPAFGHGAAYQFPDGHWLVGSYHPSQQNTFTGR 208          
BLAST of mRNA_M-pyrifera_M_contig87872.20415.1 vs. uniprot
Match: A0A7C2NY47_9PLAN (Type-5 uracil-DNA glycosylase n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C2NY47_9PLAN)

HSP 1 Score: 300 bits (767), Expect = 8.160e-101
Identity = 137/203 (67.49%), Postives = 154/203 (75.86%), Query Frame = 1
Query:    7 WNALNQQIVDCERCPRLRDHCRHVAKEKRKAYMDWEYWGKPVPNFGASQANLLIVGLAPAAHGANRTGRMFTGDRSGDWLYAALHDAGFANAATSVSADDSLALFDCVITAACHCAPPANRPTRGELLECRPWLDSTIDLLAPKVLLGLGQIGWKSALDAARRRGWHAGKLPKFAHGAVAPLNDRRWLVASYHPSQQNTFTGK 615
            W+ALN +IV CERCPRLRD+CR +A EKR+AY DW+YWG+PVPN G   A LLIVGLAPAAHGANRTGRMFTGDRSGDWLY ALH AGFAN  T+    D L LFDC ITA CHCAPP N+PT  E+  CRPWLD T+  L  +V + LGQIGW+S +D AR R    G LPKFAHGA   L D R L+ SYHPSQQNTFTG+
Sbjct:    8 WSALNDRIVACERCPRLRDYCRTIAAEKRRAYRDWDYWGRPVPNVGDPLARLLIVGLAPAAHGANRTGRMFTGDRSGDWLYRALHRAGFANQPTATDIHDGLTLFDCAITATCHCAPPDNKPTPEEISNCRPWLDETVTFLPARVFVALGQIGWRSVIDYARSRDGWRGPLPKFAHGAEVELADGRRLLGSYHPSQQNTFTGR 210          
BLAST of mRNA_M-pyrifera_M_contig87872.20415.1 vs. uniprot
Match: A0A517ZIP7_9PLAN (Type-5 uracil-DNA glycosylase n=3 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZIP7_9PLAN)

HSP 1 Score: 297 bits (760), Expect = 9.810e-100
Identity = 136/204 (66.67%), Postives = 153/204 (75.00%), Query Frame = 1
Query:    4 AWNALNQQIVDCERCPRLRDHCRHVAKEKRKAYMDWEYWGKPVPNFGASQANLLIVGLAPAAHGANRTGRMFTGDRSGDWLYAALHDAGFANAATSVSADDSLALFDCVITAACHCAPPANRPTRGELLECRPWLDSTIDLLAPKVLLGLGQIGWKSALDAARRRGWHAGKLPKFAHGAVAPLNDRRWLVASYHPSQQNTFTGK 615
            AW  LN QI  C RCPRL  HC H+A  KRKA+ D +YWG+PVPNFGA  A LL+VGLAPAAHGANRTGRMFTGDRSGDWLY ALH AGFAN  T+ +ADD L L DC ITA CHCAPP N+PT  E+  CR WL  T++ L  ++ L LGQIG+K+ L  AR RGWH GKLPKF HGA   L D R L+ASYHPSQQNTFTG+
Sbjct:    5 AWGQLNTQITTCRRCPRLIAHCEHIATVKRKAFRDSQYWGQPVPNFGAPDARLLLVGLAPAAHGANRTGRMFTGDRSGDWLYRALHRAGFANQPTATTADDGLILKDCAITAVCHCAPPQNKPTTDEIANCRDWLTETLEQLPVRLFLALGQIGFKAILKEARSRGWHTGKLPKFGHGAQVELTDGRVLLASYHPSQQNTFTGR 208          
BLAST of mRNA_M-pyrifera_M_contig87872.20415.1 vs. uniprot
Match: A0A2E7NSD0_9PLAN (Type-5 uracil-DNA glycosylase n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7NSD0_9PLAN)

HSP 1 Score: 297 bits (760), Expect = 1.090e-99
Identity = 129/203 (63.55%), Postives = 155/203 (76.35%), Query Frame = 1
Query:    7 WNALNQQIVDCERCPRLRDHCRHVAKEKRKAYMDWEYWGKPVPNFGASQANLLIVGLAPAAHGANRTGRMFTGDRSGDWLYAALHDAGFANAATSVSADDSLALFDCVITAACHCAPPANRPTRGELLECRPWLDSTIDLLAPKVLLGLGQIGWKSALDAARRRGWHAGKLPKFAHGAVAPLNDRRWLVASYHPSQQNTFTGK 615
            + +LN QIV C+RCPRLRDHC  VA+ +R+AY+DW+YWG PVPNFG  +A LLIVGLAP AHGANRTGRMFTGDRSGDWL+ ALH AGFAN  T+   DD L L DC+IT ACHCAPP NRP R ELL CR W + T+++   +V L LG I W++ +D AR   W +G +PKF+H A  PL+D RWL+ SYHPSQQNTFTG+
Sbjct:    5 FESLNSQIVSCQRCPRLRDHCAEVARTRRRAYLDWDYWGGPVPNFGDPRARLLIVGLAPGAHGANRTGRMFTGDRSGDWLFRALHRAGFANQPTATDRDDGLTLKDCLITNACHCAPPGNRPVRDELLACREWFEHTVNIAPVQVFLALGGIAWRAVIDLARDHDWFSGPIPKFSHEAAVPLSDNRWLLGSYHPSQQNTFTGR 207          
BLAST of mRNA_M-pyrifera_M_contig87872.20415.1 vs. uniprot
Match: A0A2E5VL27_9PLAN (Type-5 uracil-DNA glycosylase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E5VL27_9PLAN)

HSP 1 Score: 295 bits (756), Expect = 3.470e-99
Identity = 132/203 (65.02%), Postives = 156/203 (76.85%), Query Frame = 1
Query:    7 WNALNQQIVDCERCPRLRDHCRHVAKEKRKAYMDWEYWGKPVPNFGASQANLLIVGLAPAAHGANRTGRMFTGDRSGDWLYAALHDAGFANAATSVSADDSLALFDCVITAACHCAPPANRPTRGELLECRPWLDSTIDLLAPKVLLGLGQIGWKSALDAARRRGWHAGKLPKFAHGAVAPLNDRRWLVASYHPSQQNTFTGK 615
            W++LN++I+ C RCPRL DHCR VA++KR+AY D+EYWG+PVPNFGA +  LLIVGLAPAAHGANRTGRMFTGDRSGDWLY ALH AGFAN AT+   DD L L +C +TAACHCAPP N+PTR E+L CR W + T+D+ + +V L LGQI WK   D A  R W  G  PKF HGA   +   RWL+ASYHPSQQNTFTG+
Sbjct:    4 WSSLNEKIIRCRRCPRLIDHCRKVAQQKRRAYRDFEYWGRPVPNFGAEKPALLIVGLAPAAHGANRTGRMFTGDRSGDWLYRALHRAGFANRATARGLDDGLQLKNCAVTAACHCAPPGNKPTRDEMLACRRWFEKTVDISSAEVYLALGQIAWKVLTDLAISRAWLTGGRPKFGHGAEEQMAGHRWLLASYHPSQQNTFTGR 206          
BLAST of mRNA_M-pyrifera_M_contig87872.20415.1 vs. uniprot
Match: A0A517YM15_9BACT (Type-5 uracil-DNA glycosylase n=1 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517YM15_9BACT)

HSP 1 Score: 295 bits (755), Expect = 5.650e-99
Identity = 134/205 (65.37%), Postives = 156/205 (76.10%), Query Frame = 1
Query:    4 AWNALNQQIVDCERCPRLRDHCRHVAKEKRKAYMDWEYWGKPVPNFGASQANLLIVGLAPAAHGANRTGRMFTGDRSGDWLYAALHDAGFANAATSVSADDSLALFDCVITAACHCAPPANRPTRGELLECRPWLDSTIDLLAPKVLLGLGQIGWKSALDAARRRG-WHAGKLPKFAHGAVAPLNDRRWLVASYHPSQQNTFTGK 615
            +W +L ++IV CERCPRLR++CR +A EKRKAY+ W+YWGKPVPNFG +   LLIVGLAPAAHGANRTGRMFTGDRSG+WLY ALH AGFAN   S   DD L L DC ITA CHCAPP N+P   E+  C+PWL  T +L  P+VLL LGQ  WK++LD AR+RG + A KLP F HGA  PL   RWL+ SYHPSQQNTFTG+
Sbjct:    5 SWQSLQEKIVACERCPRLREYCREIAAEKRKAYLAWDYWGKPVPNFGVAPVGLLIVGLAPAAHGANRTGRMFTGDRSGEWLYRALHRAGFANQGHSEKIDDGLQLLDCTITAMCHCAPPDNKPLPTEIAACQPWLTQTFNLAQPRVLLALGQFAWKASLDQARQRGCFTAKKLPAFGHGAEVPLAGDRWLLGSYHPSQQNTFTGR 209          
BLAST of mRNA_M-pyrifera_M_contig87872.20415.1 vs. uniprot
Match: A0A517RJ30_9PLAN (Type-5 uracil-DNA glycosylase n=3 Tax=Gimesia TaxID=1649453 RepID=A0A517RJ30_9PLAN)

HSP 1 Score: 293 bits (751), Expect = 2.380e-98
Identity = 137/205 (66.83%), Postives = 154/205 (75.12%), Query Frame = 1
Query:    7 WNALNQQIVDCERCPRLRDHCRHVAKEKRKAYMDWEYWGKPVPNFGASQANLLIVGLAPAAHGANRTGRMFTGDRSGDWLYAALHDAGFANAATSVSADDSLALFDCVITAACHCAPPANRPTRGELLECRPWLDSTIDLLAPKVLLGLGQIGWKSALDAARRRG--WHAGKLPKFAHGAVAPLNDRRWLVASYHPSQQNTFTGK 615
            WN LNQ IV+C +C RL  HC+ +A EKRK++ DWEYWGKPVPNFG  QA LLIVGLAPAAHGANRTGRMFTGDRSGDWLY AL  AGFAN   +   DD L L +CVITA CHCAPPAN+PTR E+  C PWL+ T+DLL  KV L LGQIGWK+ LD  +R+G  W  GK P F+HGA     D  WLV SYHPSQQNTFTG+
Sbjct:    6 WNQLNQNIVNCTKCERLLAHCQKIAAEKRKSFQDWEYWGKPVPNFGDPQAELLIVGLAPAAHGANRTGRMFTGDRSGDWLYRALFKAGFANQPQAEHIDDGLQLRNCVITATCHCAPPANKPTREEIENCHPWLEQTVDLLPVKVFLALGQIGWKAVLDFKKRQGINW-TGKRPAFSHGASFQFPDGHWLVGSYHPSQQNTFTGR 209          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87872.20415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7D6D4_9PLAN3.100e-10364.88Type-5 uracil-DNA glycosylase n=1 Tax=Planctomycet... [more]
A0A517Z571_9PLAN2.090e-10267.00Type-5 uracil-DNA glycosylase n=1 Tax=Maioricimona... [more]
A0A3A0E443_9BACT2.540e-10266.83Type-5 uracil-DNA glycosylase n=1 Tax=Planctomycet... [more]
A0A6I6AH62_9PLAN2.750e-10166.50Type-5 uracil-DNA glycosylase n=8 Tax=Gimesia TaxI... [more]
A0A7C2NY47_9PLAN8.160e-10167.49Type-5 uracil-DNA glycosylase n=1 Tax=Schlesneria ... [more]
A0A517ZIP7_9PLAN9.810e-10066.67Type-5 uracil-DNA glycosylase n=3 Tax=Symmachiella... [more]
A0A2E7NSD0_9PLAN1.090e-9963.55Type-5 uracil-DNA glycosylase n=2 Tax=Planctomycet... [more]
A0A2E5VL27_9PLAN3.470e-9965.02Type-5 uracil-DNA glycosylase n=1 Tax=Planctomycet... [more]
A0A517YM15_9BACT5.650e-9965.37Type-5 uracil-DNA glycosylase n=1 Tax=Anatilimnoco... [more]
A0A517RJ30_9PLAN2.380e-9866.83Type-5 uracil-DNA glycosylase n=3 Tax=Gimesia TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87872contigM-pyrifera_M_contig87872:1..615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score287.7
Seed ortholog evalue4.2e-75
Seed eggNOG ortholog344747.PM8797T_24266
Preferred nameudgB
KEGG koko:K21929
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004844,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0033958,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0048037,GO:0050896,GO:0051536,GO:0051539,GO:0051540,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0140097,GO:1901360
EggNOG free text desc.Uracil DNA glycosylase superfamily
EggNOG OGs2J215@203682,COG1573@1,COG1573@2
EC3.2.2.27
COG Functional cat.L
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size615
Cds size615
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816788.2682886-CDS-M-pyrifera_M_contig87872:0..6151622816788.2682886-CDS-M-pyrifera_M_contig87872:0..615Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87872 1..615 -
1692278178.8994727-CDS-M-pyrifera_M_contig87872:0..6151692278178.8994727-CDS-M-pyrifera_M_contig87872:0..615Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87872 1..615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87872.20415.1prot_M-pyrifera_M_contig87872.20415.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87872 1..615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87872.20415.1

>prot_M-pyrifera_M_contig87872.20415.1 ID=prot_M-pyrifera_M_contig87872.20415.1|Name=mRNA_M-pyrifera_M_contig87872.20415.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=205bp
RAWNALNQQIVDCERCPRLRDHCRHVAKEKRKAYMDWEYWGKPVPNFGAS
QANLLIVGLAPAAHGANRTGRMFTGDRSGDWLYAALHDAGFANAATSVSA
DDSLALFDCVITAACHCAPPANRPTRGELLECRPWLDSTIDLLAPKVLLG
LGQIGWKSALDAARRRGWHAGKLPKFAHGAVAPLNDRRWLVASYHPSQQN
TFTGK
back to top

mRNA from alignment at M-pyrifera_M_contig87872:1..615-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87872.20415.1 ID=mRNA_M-pyrifera_M_contig87872.20415.1|Name=mRNA_M-pyrifera_M_contig87872.20415.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=615bp|location=Sequence derived from alignment at M-pyrifera_M_contig87872:1..615- (Macrocystis pyrifera P11B4 male)
CGGGCTTGGAATGCACTCAATCAACAGATTGTTGACTGCGAACGTTGTCC CCGCCTTCGCGACCATTGCCGGCATGTTGCCAAGGAAAAGCGAAAGGCCT ACATGGATTGGGAATACTGGGGAAAGCCAGTTCCAAATTTCGGGGCCTCG CAGGCAAACCTCTTAATCGTTGGACTCGCCCCCGCAGCACATGGCGCGAA CCGAACGGGCCGCATGTTTACTGGGGATCGCAGTGGCGACTGGCTCTACG CCGCGCTGCACGACGCCGGGTTTGCAAATGCAGCAACCAGCGTTTCTGCG GACGACAGTTTAGCGTTGTTCGACTGCGTCATTACGGCGGCGTGTCATTG TGCCCCGCCAGCGAATCGCCCAACTCGCGGCGAGCTGCTGGAGTGTCGAC CATGGCTGGACAGCACGATCGACCTCCTGGCGCCCAAGGTACTTCTGGGC TTGGGGCAAATCGGCTGGAAATCCGCGTTAGATGCCGCACGACGACGGGG ATGGCATGCAGGGAAACTCCCCAAGTTCGCTCACGGCGCCGTGGCACCGC TGAACGATCGACGTTGGCTCGTCGCCAGCTATCATCCCAGCCAGCAAAAC ACCTTCACCGGCAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig87872:1..615-

>mRNA_M-pyrifera_M_contig87872.20415.1 ID=mRNA_M-pyrifera_M_contig87872.20415.1|Name=mRNA_M-pyrifera_M_contig87872.20415.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1230bp|location=Sequence derived from alignment at M-pyrifera_M_contig87872:1..615- (Macrocystis pyrifera P11B4 male)
CGGGCTTGGAATGCACTCAATCAACAGATTGTTGACTGCGAACGTTGTCC
CCGCCTTCGCGACCATTGCCGGCATGTTGCCAAGGAAAAGCGAAAGGCCT
ACATGGATTGGGAATACTGGGGAAAGCCAGTTCCAAATTTCGGGGCCTCG
CAGGCAAACCTCTTAATCGTTGGACTCGCCCCCGCAGCACATGGCGCGAA
CCGAACGGGCCGCATGTTTACTGGGGATCGCAGTGGCGACTGGCTCTACG
CCGCGCTGCACGACGCCGGGTTTGCAAATGCAGCAACCAGCGTTTCTGCG
GACGACAGTTTAGCGTTGTTCGACTGCGTCATTACGGCGGCGTGTCATTG
TGCCCCGCCAGCGAATCGCCCAACTCGCGGCGAGCTGCTGGAGTGTCGAC
CATGGCTGGACAGCACGATCGACCTCCTGGCGCCCAAGGTACTTCTGGGC
TTGGGGCAAATCGGCTGGAAATCCGCGTTAGATGCCGCACGACGACGGGG
ATGGCATGCAGGGAAACTCCCCAAGTTCGCTCACGGCGCCGTGGCACCGC
TGAACGATCGACGTTGGCTCGTCGCCAGCTATCATCCCAGCCAGCAAAAC
ACCTTCACCGGCAAGCGGGCTTGGAATGCACTCAATCAACAGATTGTTGA
CTGCGAACGTTGTCCCCGCCTTCGCGACCATTGCCGGCATGTTGCCAAGG
AAAAGCGAAAGGCCTACATGGATTGGGAATACTGGGGAAAGCCAGTTCCA
AATTTCGGGGCCTCGCAGGCAAACCTCTTAATCGTTGGACTCGCCCCCGC
AGCACATGGCGCGAACCGAACGGGCCGCATGTTTACTGGGGATCGCAGTG
GCGACTGGCTCTACGCCGCGCTGCACGACGCCGGGTTTGCAAATGCAGCA
ACCAGCGTTTCTGCGGACGACAGTTTAGCGTTGTTCGACTGCGTCATTAC
GGCGGCGTGTCATTGTGCCCCGCCAGCGAATCGCCCAACTCGCGGCGAGC
TGCTGGAGTGTCGACCATGGCTGGACAGCACGATCGACCTCCTGGCGCCC
AAGGTACTTCTGGGCTTGGGGCAAATCGGCTGGAAATCCGCGTTAGATGC
CGCACGACGACGGGGATGGCATGCAGGGAAACTCCCCAAGTTCGCTCACG
GCGCCGTGGCACCGCTGAACGATCGACGTTGGCTCGTCGCCAGCTATCAT
CCCAGCCAGCAAAACACCTTCACCGGCAAG
back to top