mRNA_M-pyrifera_M_contig109783.2041.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109783.2041.1
Unique NamemRNA_M-pyrifera_M_contig109783.2041.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109783.2041.1 vs. uniprot
Match: A0A1Y2H0A8_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2H0A8_9FUNG)

HSP 1 Score: 114 bits (285), Expect = 2.390e-26
Identity = 50/99 (50.51%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:    1 HNLQTMSTTVRRLPPSFVLPFLTRIISKLQRRPARAQQLCTWVRALLVAHTAYLVSVPDLERRLAGLYQTVDSRLGVFKKLLRLSGRLNLVLTQVSQRQ 297
            +N++ +  TVRRLP ++V+PFLT++I K Q++P R + L  W++A+L+ HTAYL++VPDL ++L+  YQT+DSR+ VF+K+L L GRL+LV+ Q+  RQ
Sbjct:  511 NNVEVIRNTVRRLPTAYVVPFLTQVIHKFQQKPNRGEALLEWIKAVLLIHTAYLMTVPDLMKKLSNFYQTLDSRVSVFQKMLNLHGRLDLVMNQIEMRQ 609
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BLAST of mRNA_M-pyrifera_M_contig109783.2041.1 vs. uniprot
Match: A0A507EEA3_9FUNG (Utp12 domain-containing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A507EEA3_9FUNG)

HSP 1 Score: 113 bits (282), Expect = 6.040e-26
Identity = 55/98 (56.12%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:    1 HNLQTMSTTVRRLPPSFVLPFLTRIISKLQRRPARAQQLCTWVRALLVAHTAYLVSVPDLERRLAGLYQTVDSRLGVFKKLLRLSGRLNLVLTQVSQR 294
            H+   +  TVRRLPPS VLP L +++ +LQRRP RA++L  WVRA+++ H  YL+SVP+L   L  LYQT+DSR  VF+KLLRLSGRL+LV++Q++ R
Sbjct:  504 HDTNMIVATVRRLPPSQVLPLLDQLMLRLQRRPNRARELIEWVRAVVLVHAGYLMSVPNLAANLGALYQTIDSRASVFQKLLRLSGRLDLVVSQIALR 601
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BLAST of mRNA_M-pyrifera_M_contig109783.2041.1 vs. uniprot
Match: A0A197JTN1_9FUNG (WD40 repeat-like protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JTN1_9FUNG)

HSP 1 Score: 110 bits (276), Expect = 3.880e-25
Identity = 48/98 (48.98%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:    1 HNLQTMSTTVRRLPPSFVLPFLTRIISKLQRRPARAQQLCTWVRALLVAHTAYLVSVPDLERRLAGLYQTVDSRLGVFKKLLRLSGRLNLVLTQVSQR 294
            +N+  +  TVRRLP ++V+PFLT++I K Q++P+R + L  W++A+L+ HTAYL++VPDL ++L+  YQT+DSR+ V+ KL+ L GRL+LV++QV  +
Sbjct:  500 NNVDVIRNTVRRLPTAYVIPFLTQVIHKFQQKPSRGEALLEWIKAVLLIHTAYLMTVPDLVKKLSNFYQTLDSRVSVYSKLINLHGRLDLVMSQVEMQ 597
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BLAST of mRNA_M-pyrifera_M_contig109783.2041.1 vs. uniprot
Match: A0A0D2UKQ3_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UKQ3_CAPO3)

HSP 1 Score: 110 bits (276), Expect = 3.970e-25
Identity = 51/97 (52.58%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    4 NLQTMSTTVRRLPPSFVLPFLTRIISKLQRRPARAQQLCTWVRALLVAHTAYLVSVPDLERRLAGLYQTVDSRLGVFKKLLRLSGRLNLVLTQVSQR 294
            N   +  T+++LP S+V+PFLT I+ K Q +P+R   L  W+R LL+ HTAYL++VP+L   L+GLYQ VD+RL VFKKLL+LSGRL+L+++Q++ R
Sbjct:  503 NEAVIRNTMKKLPASYVIPFLTLIVEKFQAKPSRGLTLLIWIRGLLLVHTAYLMTVPNLVEALSGLYQLVDARLSVFKKLLKLSGRLDLIISQIASR 599
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BLAST of mRNA_M-pyrifera_M_contig109783.2041.1 vs. uniprot
Match: A0A067BIS1_SAPPC (Utp12 domain-containing protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BIS1_SAPPC)

HSP 1 Score: 105 bits (262), Expect = 1.210e-24
Identity = 48/98 (48.98%), Postives = 74/98 (75.51%), Query Frame = 1 
Query:    1 HNLQTMSTTVRRLPPSFVLPFLTRIISKLQRRPARAQQLCTWVRALLVAHTAYLVSVPDLERRLAGLYQTVDSRLGVFKKLLRLSGRLNLVLTQVSQR 294
            H+L+ +  T RRL P+ V PF+  ++ KL++RP R   +C W++ LL+ HTAYL++VPD+  +L+GLYQ++D+RL VF +L +L+GRLNLVL Q++ R
Sbjct:  120 HDLKVIDETCRRLSPTKVFPFVLLLVEKLEKRPTRGATMCVWIKYLLLNHTAYLMTVPDVVDKLSGLYQSLDARLKVFPQLHKLNGRLNLVLGQIAGR 217
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BLAST of mRNA_M-pyrifera_M_contig109783.2041.1 vs. uniprot
Match: A0A1Y1Y2X1_9FUNG (NUC189-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y2X1_9FUNG)

HSP 1 Score: 108 bits (270), Expect = 2.370e-24
Identity = 54/122 (44.26%), Postives = 78/122 (63.93%), Query Frame = 1 
Query:    4 NLQTMSTTVRRLPPSFVLPFLTRIISKLQRRPARAQQLCTWVRALLVAHTAYLVSVPDLERRLAGLYQTVDSRLGVFKKLLRLSGRLNLVLTQVSQRQDGXXXXXXXXXXXXRRVYVEGEDD 369
            N + ++ TV+RLPP++V+PFL ++I + Q +P R   L  W++A+L  HTAYL++VP+L + +   YQT D+RLG F+KLL LS RL+LV TQ+S R                 VY+EGE D
Sbjct:  491 NTEIINNTVKRLPPTYVIPFLAQVIPRFQAKPNRGIALLRWIKAVLTIHTAYLMTVPELVKHIGAFYQTADNRLGSFQKLLALSSRLDLVTTQLSMRTTDDVVEEFNSEPT--NVYIEGESD 610
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BLAST of mRNA_M-pyrifera_M_contig109783.2041.1 vs. uniprot
Match: A0A8H8DIE3_9FUNG (Dip2/Utp12 family-domain-containing protein (Fragment) n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H8DIE3_9FUNG)

HSP 1 Score: 106 bits (265), Expect = 2.720e-24
Identity = 50/97 (51.55%), Postives = 71/97 (73.20%), Query Frame = 1 
Query:    4 NLQTMSTTVRRLPPSFVLPFLTRIISKLQRRPARAQQLCTWVRALLVAHTAYLVSVPDLERRLAGLYQTVDSRLGVFKKLLRLSGRLNLVLTQVSQR 294
            N + + ++VRRLPP +V+P L  I+++ QRRP RA QL  WVRA L+ H  YL++VP+L R L+G YQ +D+RL  F++L+ LSGRL +V TQ+S R
Sbjct:  274 NPEVIRSSVRRLPPQYVVPLLREIVTRFQRRPNRAAQLLEWVRAPLLLHAGYLMTVPELVRELSGFYQAMDARLASFRRLMHLSGRLEMVNTQISAR 370
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BLAST of mRNA_M-pyrifera_M_contig109783.2041.1 vs. uniprot
Match: A0A8H7PZ10_9FUNG (Utp12 domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PZ10_9FUNG)

HSP 1 Score: 108 bits (269), Expect = 3.370e-24
Identity = 50/97 (51.55%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:    4 NLQTMSTTVRRLPPSFVLPFLTRIISKLQRRPARAQQLCTWVRALLVAHTAYLVSVPDLERRLAGLYQTVDSRLGVFKKLLRLSGRLNLVLTQVSQR 294
            N + +  TVRRLP +FV+PFL +I+ K Q RP R + L  W++A+L+ HTAYL++VPDL  +L+  Y+ +D+RLGVF+KLL L GRL+LV++Q+  R
Sbjct:  498 NPEIIRNTVRRLPTTFVIPFLQQIVDKFQERPNRGKALLEWIKAILLIHTAYLMTVPDLVGKLSNFYKALDARLGVFQKLLGLHGRLDLVMSQIDMR 594
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BLAST of mRNA_M-pyrifera_M_contig109783.2041.1 vs. uniprot
Match: A0A067BZW6_SAPPC (Utp12 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BZW6_SAPPC)

HSP 1 Score: 105 bits (262), Expect = 2.810e-23
Identity = 48/98 (48.98%), Postives = 74/98 (75.51%), Query Frame = 1 
Query:    1 HNLQTMSTTVRRLPPSFVLPFLTRIISKLQRRPARAQQLCTWVRALLVAHTAYLVSVPDLERRLAGLYQTVDSRLGVFKKLLRLSGRLNLVLTQVSQR 294
            H+L+ +  T RRL P+ V PF+  ++ KL++RP R   +C W++ LL+ HTAYL++VPD+  +L+GLYQ++D+RL VF +L +L+GRLNLVL Q++ R
Sbjct:  463 HDLKVIDETCRRLSPTKVFPFVLLLVEKLEKRPTRGATMCVWIKYLLLNHTAYLMTVPDVVDKLSGLYQSLDARLKVFPQLHKLNGRLNLVLGQIAGR 560
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BLAST of mRNA_M-pyrifera_M_contig109783.2041.1 vs. uniprot
Match: A0A8H7UN63_MORIS (Utp12 domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7UN63_MORIS)

HSP 1 Score: 105 bits (262), Expect = 2.960e-23
Identity = 49/97 (50.52%), Postives = 72/97 (74.23%), Query Frame = 1 
Query:    4 NLQTMSTTVRRLPPSFVLPFLTRIISKLQRRPARAQQLCTWVRALLVAHTAYLVSVPDLERRLAGLYQTVDSRLGVFKKLLRLSGRLNLVLTQVSQR 294
            N + +  TVRRLP ++V+PFL +I+ K Q RP R + L  W++A+L+ HTAYL++VPDL  +L+  Y  +D+RLGVF+KLL L GRL+LV++Q+  R
Sbjct:  498 NPEIIRNTVRRLPTAWVIPFLQQIVDKFQERPNRGKVLLEWIKAILLIHTAYLMTVPDLVGKLSNFYMALDARLGVFQKLLGLHGRLDLVMSQIDMR 594
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109783.2041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y2H0A8_9FUNG2.390e-2650.51WD40-repeat-containing domain protein n=1 Tax=Lobo... [more]
A0A507EEA3_9FUNG6.040e-2656.12Utp12 domain-containing protein n=2 Tax=Spizellomy... [more]
A0A197JTN1_9FUNG3.880e-2548.98WD40 repeat-like protein n=1 Tax=Linnemannia elong... [more]
A0A0D2UKQ3_CAPO33.970e-2552.58Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
A0A067BIS1_SAPPC1.210e-2448.98Utp12 domain-containing protein (Fragment) n=1 Tax... [more]
A0A1Y1Y2X1_9FUNG2.370e-2444.26NUC189-domain-containing protein n=1 Tax=Basidiobo... [more]
A0A8H8DIE3_9FUNG2.720e-2451.55Dip2/Utp12 family-domain-containing protein (Fragm... [more]
A0A8H7PZ10_9FUNG3.370e-2451.55Utp12 domain-containing protein n=1 Tax=Umbelopsis... [more]
A0A067BZW6_SAPPC2.810e-2348.98Utp12 domain-containing protein n=2 Tax=Saprolegni... [more]
A0A8H7UN63_MORIS2.960e-2350.52Utp12 domain-containing protein n=1 Tax=Mortierell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109783contigM-pyrifera_M_contig109783:51..557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score112.1
Seed ortholog evalue2.5e-22
Seed eggNOG ortholog109760.SPPG_02548T0
Preferred nameUTP5
KEGG koko:K14546
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0000785,GO:0000792,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0033553,GO:0034455,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.u3 small nucleolar rna-associated protein 5
EggNOG OGs38HDH@33154,3NWZN@4751,KOG4547@1,KOG4547@2759
COG Functional cat.S
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size507
Cds size492
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.1989005-UTR-M-pyrifera_M_contig109783:50..651622815608.1989005-UTR-M-pyrifera_M_contig109783:50..65Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109783 51..65 +
1692277485.3640049-UTR-M-pyrifera_M_contig109783:50..651692277485.3640049-UTR-M-pyrifera_M_contig109783:50..65Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109783 51..65 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.2158625-CDS-M-pyrifera_M_contig109783:65..5571622815608.2158625-CDS-M-pyrifera_M_contig109783:65..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109783 66..557 +
1692277485.3758314-CDS-M-pyrifera_M_contig109783:65..5571692277485.3758314-CDS-M-pyrifera_M_contig109783:65..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109783 66..557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109783.2041.1prot_M-pyrifera_M_contig109783.2041.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109783 66..557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109783.2041.1

>prot_M-pyrifera_M_contig109783.2041.1 ID=prot_M-pyrifera_M_contig109783.2041.1|Name=mRNA_M-pyrifera_M_contig109783.2041.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=164bp
MSTTVRRLPPSFVLPFLTRIISKLQRRPARAQQLCTWVRALLVAHTAYLV
SVPDLERRLAGLYQTVDSRLGVFKKLLRLSGRLNLVLTQVSQRQDGGGGG
GGGGGAGERRVYVEGEDDSGVEEEGEEEEEESGSEGESGSESESGSESGS
ESDGEDSELEDDE*
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mRNA from alignment at M-pyrifera_M_contig109783:51..557+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109783.2041.1 ID=mRNA_M-pyrifera_M_contig109783.2041.1|Name=mRNA_M-pyrifera_M_contig109783.2041.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=507bp|location=Sequence derived from alignment at M-pyrifera_M_contig109783:51..557+ (Macrocystis pyrifera P11B4 male)
CACAATCTACAGACCATGTCCACCACGGTCCGCCGTCTTCCCCCCTCCTT
CGTCCTCCCGTTCCTCACCAGGATCATCTCCAAGCTGCAGCGCCGCCCCG
CGCGCGCGCAGCAGCTGTGCACCTGGGTGCGCGCCCTCCTCGTCGCGCAC
ACCGCCTACCTGGTGTCCGTGCCGGACCTGGAGCGCCGACTGGCTGGCCT
GTACCAGACGGTGGACTCGCGGCTGGGCGTGTTCAAGAAGCTGCTCCGAC
TGTCCGGCCGCCTCAACCTGGTGCTGACGCAGGTGTCTCAGCGGCAGGAC
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCGGGTGAGAGGAGGGTGTA
CGTGGAGGGCGAGGATGACAGTGGGGTGGAGGAGGAGGGTGAGGAGGAGG
AGGAGGAGAGTGGGAGTGAGGGCGAGAGCGGGAGCGAGAGTGAGAGCGGG
AGTGAGAGCGGGAGTGAGAGCGATGGTGAGGACAGCGAGCTGGAGGACGA
TGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109783:51..557+

>mRNA_M-pyrifera_M_contig109783.2041.1 ID=mRNA_M-pyrifera_M_contig109783.2041.1|Name=mRNA_M-pyrifera_M_contig109783.2041.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=984bp|location=Sequence derived from alignment at M-pyrifera_M_contig109783:51..557+ (Macrocystis pyrifera P11B4 male)
ATGTCCACCACGGTCCGCCGTCTTCCCCCCTCCTTCGTCCTCCCGTTCCT
CACCAGGATCATCTCCAAGCTGCAGCGCCGCCCCGCGCGCGCGCAGCAGC
TGTGCACCTGGGTGCGCGCCCTCCTCGTCGCGCACACCGCCTACCTGGTG
TCCGTGCCGGACCTGGAGCGCCGACTGGCTGGCCTGTACCAGACGGTGGA
CTCGCGGCTGGGCGTGTTCAAGAAGCTGCTCCGACTGTCCGGCCGCCTCA
ACCTGGTGCTGACGCAGGTGTCTCAGCGGCAGGACGGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCGCGGGTGAGAGGAGGGTGTACGTGGAGGGCGAGGA
TGACAGTGGGGTGGAGGAGGAGGGTGAGGAGGAGGAGGAGGAGAGTGGGA
GTGAGGGCGAGAGCGGGAGCGAGAGTGAGAGCGGGAGTGAGAGCGGGAGT
GAGAGCGATGGTGAGGACAGCGAGCTGGAGGACGATGAGTGAATGTCCAC
CACGGTCCGCCGTCTTCCCCCCTCCTTCGTCCTCCCGTTCCTCACCAGGA
TCATCTCCAAGCTGCAGCGCCGCCCCGCGCGCGCGCAGCAGCTGTGCACC
TGGGTGCGCGCCCTCCTCGTCGCGCACACCGCCTACCTGGTGTCCGTGCC
GGACCTGGAGCGCCGACTGGCTGGCCTGTACCAGACGGTGGACTCGCGGC
TGGGCGTGTTCAAGAAGCTGCTCCGACTGTCCGGCCGCCTCAACCTGGTG
CTGACGCAGGTGTCTCAGCGGCAGGACGGCGGCGGCGGCGGCGGCGGCGG
CGGCGGCGCGGGTGAGAGGAGGGTGTACGTGGAGGGCGAGGATGACAGTG
GGGTGGAGGAGGAGGGTGAGGAGGAGGAGGAGGAGAGTGGGAGTGAGGGC
GAGAGCGGGAGCGAGAGTGAGAGCGGGAGTGAGAGCGGGAGTGAGAGCGA
TGGTGAGGACAGCGAGCTGGAGGACGATGAGTGA
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