mRNA_M-pyrifera_M_contig87795.20393.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87795.20393.1
Unique NamemRNA_M-pyrifera_M_contig87795.20393.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87795.20393.1 vs. uniprot
Match: A0A177QFE3_9GAMM (HTH luxR-type domain-containing protein n=1 Tax=Gammaproteobacteria bacterium SCGC AG-212-F23 TaxID=1799661 RepID=A0A177QFE3_9GAMM)

HSP 1 Score: 55.8 bits (133), Expect = 3.590e-6
Identity = 48/186 (25.81%), Postives = 90/186 (48.39%), Query Frame = 1 
Query:    7 LLDNMPGYIYMRNVEFQMIYCNQRFADFCKFNSPKYIRDIIEAKMLGEVIADGRFSPDDYLHQFEEQHNKALGGTEVTILDVHQYVVGIKAFYTT-KSPVFDSDNKLRGV---LVQATELPMFSDEIYVKFAQKKDIQISPPTLEIFQQSTCLPEGFECLTSKEISCLYHTLRGFSAKQIGKVLKI 552
            +++N+PG I+++++E + I CN+R  +F   +S    RD     ++G+   D  ++P  Y   + E   + L G  ++ +   Q   G K    T KSP+ +++ ++ G+   +  A+ LP       +    + D Q++    + FQ           LT +EI CL+H +RG +A  I  +L I
Sbjct:   13 IINNLPGPIWVKDLEMRYIACNERCKNFVGLSS----RD----DLIGKFDHDLSWNP--YAELYREGDKEILKGKSLSFMHPIQLYNGRKLIIITQKSPIKNNNEEIIGITGSIAIASSLPFVKS---INHLTQFDAQLTGN--DYFQYIVSDDFCQFNLTKREIHCLFHLVRGKTANDIANILFI 183
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87795.20393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A177QFE3_9GAMM3.590e-625.81HTH luxR-type domain-containing protein n=1 Tax=Ga... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87795contigM-pyrifera_M_contig87795:3..554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size552
Cds size534
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816787.2085924-CDS-M-pyrifera_M_contig87795:2..5361622816787.2085924-CDS-M-pyrifera_M_contig87795:2..536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87795 3..536 -
1692278178.333395-CDS-M-pyrifera_M_contig87795:2..5361692278178.333395-CDS-M-pyrifera_M_contig87795:2..536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87795 3..536 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816787.2220726-UTR-M-pyrifera_M_contig87795:536..5541622816787.2220726-UTR-M-pyrifera_M_contig87795:536..554Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig87795 537..554 -
1692278178.3446186-UTR-M-pyrifera_M_contig87795:536..5541692278178.3446186-UTR-M-pyrifera_M_contig87795:536..554Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig87795 537..554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87795.20393.1prot_M-pyrifera_M_contig87795.20393.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87795 3..536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87795.20393.1

>prot_M-pyrifera_M_contig87795.20393.1 ID=prot_M-pyrifera_M_contig87795.20393.1|Name=mRNA_M-pyrifera_M_contig87795.20393.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
MPGYIYMRNVEFQMIYCNQRFADFCKFNSPKYIRDIIEAKMLGEVIADGR
FSPDDYLHQFEEQHNKALGGTEVTILDVHQYVVGIKAFYTTKSPVFDSDN
KLRGVLVQATELPMFSDEIYVKFAQKKDIQISPPTLEIFQQSTCLPEGFE
CLTSKEISCLYHTLRGFSAKQIGKVLKI
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mRNA from alignment at M-pyrifera_M_contig87795:3..554-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87795.20393.1 ID=mRNA_M-pyrifera_M_contig87795.20393.1|Name=mRNA_M-pyrifera_M_contig87795.20393.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig87795:3..554- (Macrocystis pyrifera P11B4 male)
AAAAAGTTACTTGATAATATGCCGGGCTATATTTATATGAGGAATGTTGA
GTTTCAAATGATATATTGCAACCAACGATTTGCTGATTTTTGTAAATTCA
ACTCACCTAAGTACATCCGTGATATTATCGAAGCTAAAATGCTTGGTGAA
GTCATTGCCGATGGCAGGTTTTCTCCTGATGATTATTTGCATCAATTCGA
AGAACAGCATAATAAAGCTTTAGGGGGCACAGAGGTAACAATACTCGACG
TTCACCAATATGTAGTTGGTATAAAAGCATTTTATACCACAAAATCACCA
GTGTTTGACAGCGATAACAAACTAAGAGGTGTTTTAGTGCAGGCGACTGA
ATTGCCTATGTTTAGTGATGAAATCTATGTAAAATTTGCTCAAAAAAAAG
ACATTCAAATTAGCCCCCCTACGCTCGAAATCTTTCAACAAAGTACTTGT
TTGCCCGAAGGGTTTGAGTGTCTGACTTCGAAGGAAATATCATGCCTGTA
TCATACCTTAAGAGGGTTCTCTGCTAAGCAAATTGGTAAAGTACTAAAAA
TA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87795:3..554-

>mRNA_M-pyrifera_M_contig87795.20393.1 ID=mRNA_M-pyrifera_M_contig87795.20393.1|Name=mRNA_M-pyrifera_M_contig87795.20393.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1068bp|location=Sequence derived from alignment at M-pyrifera_M_contig87795:3..554- (Macrocystis pyrifera P11B4 male)
ATGCCGGGCTATATTTATATGAGGAATGTTGAGTTTCAAATGATATATTG
CAACCAACGATTTGCTGATTTTTGTAAATTCAACTCACCTAAGTACATCC
GTGATATTATCGAAGCTAAAATGCTTGGTGAAGTCATTGCCGATGGCAGG
TTTTCTCCTGATGATTATTTGCATCAATTCGAAGAACAGCATAATAAAGC
TTTAGGGGGCACAGAGGTAACAATACTCGACGTTCACCAATATGTAGTTG
GTATAAAAGCATTTTATACCACAAAATCACCAGTGTTTGACAGCGATAAC
AAACTAAGAGGTGTTTTAGTGCAGGCGACTGAATTGCCTATGTTTAGTGA
TGAAATCTATGTAAAATTTGCTCAAAAAAAAGACATTCAAATTAGCCCCC
CTACGCTCGAAATCTTTCAACAAAGTACTTGTTTGCCCGAAGGGTTTGAG
TGTCTGACTTCGAAGGAAATATCATGCCTGTATCATACCTTAAGAGGGTT
CTCTGCTAAGCAAATTGGTAAAGTACTAAAAATAATGCCGGGCTATATTT
ATATGAGGAATGTTGAGTTTCAAATGATATATTGCAACCAACGATTTGCT
GATTTTTGTAAATTCAACTCACCTAAGTACATCCGTGATATTATCGAAGC
TAAAATGCTTGGTGAAGTCATTGCCGATGGCAGGTTTTCTCCTGATGATT
ATTTGCATCAATTCGAAGAACAGCATAATAAAGCTTTAGGGGGCACAGAG
GTAACAATACTCGACGTTCACCAATATGTAGTTGGTATAAAAGCATTTTA
TACCACAAAATCACCAGTGTTTGACAGCGATAACAAACTAAGAGGTGTTT
TAGTGCAGGCGACTGAATTGCCTATGTTTAGTGATGAAATCTATGTAAAA
TTTGCTCAAAAAAAAGACATTCAAATTAGCCCCCCTACGCTCGAAATCTT
TCAACAAAGTACTTGTTTGCCCGAAGGGTTTGAGTGTCTGACTTCGAAGG
AAATATCATGCCTGTATCATACCTTAAGAGGGTTCTCTGCTAAGCAAATT
GGTAAAGTACTAAAAATA
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