mRNA_M-pyrifera_M_contig87710.20375.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87710.20375.1
Unique NamemRNA_M-pyrifera_M_contig87710.20375.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87710.20375.1 vs. uniprot
Match: D8LD89_ECTSI (Prenyltransferase, UbiA family, Putative 4-hydroxybenzoate octaprenyltransferase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD89_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.510e-13
Identity = 54/65 (83.08%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 ATQATIVASVALTFAYTPLLKPIPVVKNFVVSAVXXXXXXXXXXXXXXXXXATLTPSVLTFFVIG 195
            A QATIVASVALT AYTPLLKPIP+VKNFVV+ V XXXXXXXXXXXX    +TLTPSVLTFFVIG
Sbjct:  120 ALQATIVASVALTLAYTPLLKPIPLVKNFVVAMVIXXXXXXXXXXXXAGVASTLTPSVLTFFVIG 184
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BLAST of mRNA_M-pyrifera_M_contig87710.20375.1 vs. uniprot
Match: A0A6H5LBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBF2_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.500e-13
Identity = 42/65 (64.62%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 ATQATIVASVALTFAYTPLLKPIPVVKNFVVSAVXXXXXXXXXXXXXXXXXATLTPSVLTFFVIG 195
            A QATIVASVALT AYTPLLKPIP+VKNFVV+ V                 +TLTPSVLTFFVIG
Sbjct:  238 ALQATIVASVALTLAYTPLLKPIPLVKNFVVAMVIAAAIGAGGLAAGAGVASTLTPSVLTFFVIG 302
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87710.20375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD89_ECTSI1.510e-1383.08Prenyltransferase, UbiA family, Putative 4-hydroxy... [more]
A0A6H5LBF2_9PHAE4.500e-1364.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87710contigM-pyrifera_M_contig87710:463..657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue2e-10
Seed eggNOG ortholog2880.D8LD89
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.UbiA prenyltransferase family
EggNOG OGs2CYY1@1,2S75T@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816786.5690198-CDS-M-pyrifera_M_contig87710:462..6571622816786.5690198-CDS-M-pyrifera_M_contig87710:462..657Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87710 463..657 -
1692278178.0734236-CDS-M-pyrifera_M_contig87710:462..6571692278178.0734236-CDS-M-pyrifera_M_contig87710:462..657Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87710 463..657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87710.20375.1prot_M-pyrifera_M_contig87710.20375.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87710 463..657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87710.20375.1

>prot_M-pyrifera_M_contig87710.20375.1 ID=prot_M-pyrifera_M_contig87710.20375.1|Name=mRNA_M-pyrifera_M_contig87710.20375.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
ATQATIVASVALTFAYTPLLKPIPVVKNFVVSAVVAAAIAAGGLAAGAGA
AATLTPSVLTFFVIG
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mRNA from alignment at M-pyrifera_M_contig87710:463..657-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87710.20375.1 ID=mRNA_M-pyrifera_M_contig87710.20375.1|Name=mRNA_M-pyrifera_M_contig87710.20375.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig87710:463..657- (Macrocystis pyrifera P11B4 male)
GCGACTCAGGCTACGATAGTGGCCTCCGTGGCCCTGACCTTCGCCTACAC
TCCCCTGCTCAAGCCGATACCGGTGGTGAAGAACTTTGTCGTGTCTGCGG
TTGTGGCCGCGGCTATCGCCGCGGGGGGACTTGCTGCCGGCGCCGGCGCC
GCGGCCACCCTGACCCCGTCCGTACTGACGTTCTTCGTCATCGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87710:463..657-

>mRNA_M-pyrifera_M_contig87710.20375.1 ID=mRNA_M-pyrifera_M_contig87710.20375.1|Name=mRNA_M-pyrifera_M_contig87710.20375.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig87710:463..657- (Macrocystis pyrifera P11B4 male)
GCGACTCAGGCTACGATAGTGGCCTCCGTGGCCCTGACCTTCGCCTACAC
TCCCCTGCTCAAGCCGATACCGGTGGTGAAGAACTTTGTCGTGTCTGCGG
TTGTGGCCGCGGCTATCGCCGCGGGGGGACTTGCTGCCGGCGCCGGCGCC
GCGGCCACCCTGACCCCGTCCGTACTGACGTTCTTCGTCATCGGTGCGAC
TCAGGCTACGATAGTGGCCTCCGTGGCCCTGACCTTCGCCTACACTCCCC
TGCTCAAGCCGATACCGGTGGTGAAGAACTTTGTCGTGTCTGCGGTTGTG
GCCGCGGCTATCGCCGCGGGGGGACTTGCTGCCGGCGCCGGCGCCGCGGC
CACCCTGACCCCGTCCGTACTGACGTTCTTCGTCATCGGT
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