mRNA_M-pyrifera_M_contig87501.20327.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87501.20327.1
Unique NamemRNA_M-pyrifera_M_contig87501.20327.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87501.20327.1 vs. uniprot
Match: A0A5E5AEL4_9BURK (DUF4224 domain-containing protein n=2 Tax=Pandoraea anapnoica TaxID=2508301 RepID=A0A5E5AEL4_9BURK)

HSP 1 Score: 54.7 bits (130), Expect = 1.260e-8
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   13 LHLTESELAEITGRVRSAAQSRALSAMGIPFKVNPDGKILVVREH 147
            + LT+SE+ E+TGRVR  +Q+  LSA+GI  KV PDG +LV+R H
Sbjct:    8 IFLTQSEIREMTGRVRHKSQTLVLSALGIEHKVRPDGSLLVLRSH 52
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BLAST of mRNA_M-pyrifera_M_contig87501.20327.1 vs. uniprot
Match: UPI00096A95B1 (DUF4224 domain-containing protein n=1 Tax=Halomonas massiliensis TaxID=1816686 RepID=UPI00096A95B1)

HSP 1 Score: 47.4 bits (111), Expect = 8.910e-6
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   13 LHLTESELAEITGRVRSAAQSRALSAMGIPFKVNPDGKILVVREH 147
            L LT  EL ++TGR ++ +Q  AL AMGI +K+N  GK+LV R+H
Sbjct:    4 LFLTAEELIQLTGRKQTKSQREALDAMGIYWKINAAGKLLVGRKH 48
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BLAST of mRNA_M-pyrifera_M_contig87501.20327.1 vs. uniprot
Match: UPI0018E09BE6 (DUF4224 domain-containing protein n=1 Tax=Halomonas elongata TaxID=2746 RepID=UPI0018E09BE6)

HSP 1 Score: 46.2 bits (108), Expect = 2.550e-5
Identity = 23/45 (51.11%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:   13 LHLTESELAEITGRVRSAAQSRALSAMGIPFKVNPDGKILVVREH 147
            L LT  EL E+TGR R   QS  L+AMGI +K N  G+++V R H
Sbjct:    3 LFLTSEELEELTGRKRRKEQSETLTAMGIRWKTNAAGELIVGRSH 47
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BLAST of mRNA_M-pyrifera_M_contig87501.20327.1 vs. uniprot
Match: A0A4S1E765_9BURK (DUF4224 domain-containing protein n=1 Tax=Alcaligenaceae bacterium 429 TaxID=2562948 RepID=A0A4S1E765_9BURK)

HSP 1 Score: 46.2 bits (108), Expect = 3.450e-5
Identity = 19/43 (44.19%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:   13 LHLTESELAEITGRVRSAAQSRALSAMGIPFKVNPDGKILVVR 141
            L L + EL EITG+ R+  +   L+ MGIPF++ PDG ++V++
Sbjct:   10 LTLNDPELTEITGKTRNKGRIEVLTQMGIPFRIRPDGSLVVLK 52
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BLAST of mRNA_M-pyrifera_M_contig87501.20327.1 vs. uniprot
Match: A0A537AZ45_9PROT (DUF4224 domain-containing protein (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537AZ45_9PROT)

HSP 1 Score: 47.0 bits (110), Expect = 3.960e-5
Identity = 22/46 (47.83%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    7 GMLHLTESELAEITGRVRSAAQSRALSAMGIPFKVNPDGKILVVRE 144
            G L L+ +EL  +T R R  AQ R L A+GI +++ PDG I+V+RE
Sbjct:   50 GALLLSPAELVALTERTRRGAQRRVLDALGISYRLRPDGSIVVLRE 95
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BLAST of mRNA_M-pyrifera_M_contig87501.20327.1 vs. uniprot
Match: A0A4V3G204_9GAMM (Uncharacterized protein DUF4224 n=1 Tax=Halomonas alkaliantarctica TaxID=232346 RepID=A0A4V3G204_9GAMM)

HSP 1 Score: 45.1 bits (105), Expect = 7.270e-5
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:   13 LHLTESELAEITGRVRSAAQSRALSAMGIPFKVNPDGKILVVREH 147
            L LT  E+  +TGR +  +Q  AL AMGI +KVN  GK+LV R+H
Sbjct:    4 LFLTVEEMVRLTGRKQYKSQREALDAMGIYWKVNAAGKLLVGRKH 48
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87501.20327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A5E5AEL4_9BURK1.260e-855.56DUF4224 domain-containing protein n=2 Tax=Pandorae... [more]
UPI00096A95B18.910e-651.11DUF4224 domain-containing protein n=1 Tax=Halomona... [more]
UPI0018E09BE62.550e-551.11DUF4224 domain-containing protein n=1 Tax=Halomona... [more]
A0A4S1E765_9BURK3.450e-544.19DUF4224 domain-containing protein n=1 Tax=Alcalige... [more]
A0A537AZ45_9PROT3.960e-547.83DUF4224 domain-containing protein (Fragment) n=1 T... [more]
A0A4V3G204_9GAMM7.270e-551.11Uncharacterized protein DUF4224 n=1 Tax=Halomonas ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87501contigM-pyrifera_M_contig87501:534..680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size138
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816783.7885509-UTR-M-pyrifera_M_contig87501:533..5421622816783.7885509-UTR-M-pyrifera_M_contig87501:533..542Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig87501 534..542 +
1692278176.1918054-UTR-M-pyrifera_M_contig87501:533..5421692278176.1918054-UTR-M-pyrifera_M_contig87501:533..542Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig87501 534..542 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816783.8015406-CDS-M-pyrifera_M_contig87501:542..6801622816783.8015406-CDS-M-pyrifera_M_contig87501:542..680Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87501 543..680 +
1692278176.2029297-CDS-M-pyrifera_M_contig87501:542..6801692278176.2029297-CDS-M-pyrifera_M_contig87501:542..680Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87501 543..680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87501.20327.1prot_M-pyrifera_M_contig87501.20327.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87501 543..680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87501.20327.1

>prot_M-pyrifera_M_contig87501.20327.1 ID=prot_M-pyrifera_M_contig87501.20327.1|Name=mRNA_M-pyrifera_M_contig87501.20327.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
MLHLTESELAEITGRVRSAAQSRALSAMGIPFKVNPDGKILVVREH
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mRNA from alignment at M-pyrifera_M_contig87501:534..680+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87501.20327.1 ID=mRNA_M-pyrifera_M_contig87501.20327.1|Name=mRNA_M-pyrifera_M_contig87501.20327.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig87501:534..680+ (Macrocystis pyrifera P11B4 male)
GGATGCGGGATGCTGCACTTAACCGAATCTGAACTGGCCGAGATAACCGG
GCGTGTCCGCAGCGCCGCCCAGTCTCGCGCATTGTCGGCAATGGGCATAC
CATTCAAGGTGAATCCGGACGGGAAGATCCTTGTCGTGCGAGAACAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87501:534..680+

>mRNA_M-pyrifera_M_contig87501.20327.1 ID=mRNA_M-pyrifera_M_contig87501.20327.1|Name=mRNA_M-pyrifera_M_contig87501.20327.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig87501:534..680+ (Macrocystis pyrifera P11B4 male)
ATGCTGCACTTAACCGAATCTGAACTGGCCGAGATAACCGGGCGTGTCCG
CAGCGCCGCCCAGTCTCGCGCATTGTCGGCAATGGGCATACCATTCAAGG
TGAATCCGGACGGGAAGATCCTTGTCGTGCGAGAACATATGCTGCACTTA
ACCGAATCTGAACTGGCCGAGATAACCGGGCGTGTCCGCAGCGCCGCCCA
GTCTCGCGCATTGTCGGCAATGGGCATACCATTCAAGGTGAATCCGGACG
GGAAGATCCTTGTCGTGCGAGAACAT
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