prot_M-pyrifera_M_contig8730.20290.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig8730.20290.1
Unique Nameprot_M-pyrifera_M_contig8730.20290.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length47
Homology
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BLAST of mRNA_M-pyrifera_M_contig8730.20290.1 vs. uniprot
Match: D7FIW5_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIW5_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.700e-16
Identity = 37/44 (84.09%), Postives = 38/44 (86.36%), Query Frame = 0 
Query:    1 ELDRARKCVACLMRERDTLLFPCKHLVLCGACYKRVVHQAERDA 44
            ELDRARKCVACL R+RDTLLFPCKHLVLC  CY RVV QAE DA
Sbjct:  608 ELDRARKCVACLSRDRDTLLFPCKHLVLCSQCYTRVVRQAEDDA 651
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BLAST of mRNA_M-pyrifera_M_contig8730.20290.1 vs. uniprot
Match: A0A383VPS7_TETOB (RING-type E3 ubiquitin transferase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VPS7_TETOB)

HSP 1 Score: 47.4 bits (111), Expect = 8.050e-5
Identity = 22/42 (52.38%), Postives = 26/42 (61.90%), Query Frame = 0 
Query:    1 ELDRARKCVACLMRERDTLLFPCKHLVLCGACYKRVVHQAER 42
            +L +A  CV CL   RDTLL PCKHLVLC  C   +   A+R
Sbjct:  713 QLHQATHCVVCLDAPRDTLLLPCKHLVLCQGCSCHLQQLAQR 754
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8730.20290.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIW5_ECTSI1.700e-1684.09RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A383VPS7_TETOB8.050e-552.38RING-type E3 ubiquitin transferase n=1 Tax=Tetrade... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 6..38
e-value: 1.3E-9
score: 37.8
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..44
e-value: 1.3E-9
score: 39.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8730contigM-pyrifera_M_contig8730:9726..9866 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8730.20290.1mRNA_M-pyrifera_M_contig8730.20290.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig8730 9726..9866 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig8730.20290.1 ID=prot_M-pyrifera_M_contig8730.20290.1|Name=mRNA_M-pyrifera_M_contig8730.20290.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
ELDRARKCVACLMRERDTLLFPCKHLVLCGACYKRVVHQAERDADAD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD