mRNA_M-pyrifera_M_contig8702.20233.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig8702.20233.1 vs. uniprot
Match: A0A6H5KQ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ72_9PHAE) HSP 1 Score: 231 bits (589), Expect = 6.900e-74 Identity = 114/127 (89.76%), Postives = 119/127 (93.70%), Query Frame = 1 Query: 4 AIQARALVFSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTKGLYLEHKEVGIAQYLLTTFLPSQSCRKYLKLRKQQSVDFRAACFCHKRIVDIAYVCSVCLSVFCEFSPVCT 384 A ARALV SG+PDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLT GLYLEH+ VG+AQY+ TFLPSQSCRKYLKLR QQSVDFRAACFCHKR+VDIAYVCSVCLSVFCEFSPVCT Sbjct: 160 ASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCT 286
BLAST of mRNA_M-pyrifera_M_contig8702.20233.1 vs. uniprot
Match: A0A835ZC01_9STRA (Putative general transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC01_9STRA) HSP 1 Score: 167 bits (424), Expect = 2.520e-49 Identity = 77/126 (61.11%), Postives = 98/126 (77.78%), Query Frame = 1 Query: 4 AIQARALVFSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTKGLYLEHKEVGIAQYLLTTFLPSQSCRKYLKLRKQQSVDFRAACFCHKRIVDIAYVCSVCLSVFCEFSPVC 381 ++Q R LV PD PE+YN+VMN IFSAQKA + VDC +G S F+QQAA +T G+Y +E + Q LLT LPSQ+CRKYL+ + Q++VDFRAACFCH+R+++IAYVCSVCLSVFCEFSP+C Sbjct: 146 SVQTRLLVVQAGPDAPESYNAVMNCIFSAQKAQIPVDCLCVGPDSVFMQQAADVTGGVYCHVQEPNVLQQLLTLILPSQACRKYLRTKGQETVDFRAACFCHRRLIEIAYVCSVCLSVFCEFSPIC 271
BLAST of mRNA_M-pyrifera_M_contig8702.20233.1 vs. uniprot
Match: K3WG36_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WG36_GLOUD) HSP 1 Score: 146 bits (368), Expect = 1.290e-40 Identity = 74/128 (57.81%), Postives = 92/128 (71.88%), Query Frame = 1 Query: 7 IQARALVFSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLG-ESSTFLQQAAYLTKGLYLEHKE-VGIAQYLLTTFLPSQSCRKYLKLRKQQSVDFRAACFCHKRIVDIAYVCSVCLSVFCEFSPVCT 384 ++ R LV +PDV E Y S+MN IFSAQK GV VD VL + S+FLQQAAYLT G+Y + + G+ QYLL+ +LP S RK LKL Q SVDFRA CFCHKR++ A+VC VCLS+FCEF P+C+ Sbjct: 161 LRPRILVIQKSPDVSEHYISIMNGIFSAQKKGVAVDACVLARDQSSFLQQAAYLTGGIYYKPNDHSGLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKRVISTAFVCPVCLSLFCEFQPICS 288
BLAST of mRNA_M-pyrifera_M_contig8702.20233.1 vs. uniprot
Match: E1ZLF6_CHLVA (General transcription and DNA repair factor IIH subunit TFB4 (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZLF6_CHLVA) HSP 1 Score: 140 bits (352), Expect = 2.560e-40 Identity = 72/126 (57.14%), Postives = 89/126 (70.63%), Query Frame = 1 Query: 13 ARALVFSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGES-STFLQQAAYLTKGLYLE-HKEVGIAQYLLTTFLPSQSCRKYLKLRKQQSVDFRAACFCHKRIVDIAYVCSVCLSVFCEFSPVCT 384 AR L + APDVP Y SVMNAIFSAQ++GVL+D LG STFLQQAAYLT G+YL+ K V + QYL + F + R++L++ VDFRA+CFCHKR +D+ YVCS CLS+FCE P CT Sbjct: 4 ARVLCLTAAPDVPSQYISVMNAIFSAQRSGVLIDACQLGRRHSTFLQQAAYLTGGVYLKPSKPVALVQYLNSVFAVDAATRQFLRMPGTAHVDFRASCFCHKRQIDLGYVCSACLSIFCEQLPACT 129
BLAST of mRNA_M-pyrifera_M_contig8702.20233.1 vs. uniprot
Match: D7FYW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW4_ECTSI) HSP 1 Score: 137 bits (346), Expect = 1.210e-39 Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 1 Query: 163 LTKGLYLEHKEVGIAQYLLTTFLPSQSCRKYLKLRKQQSVDFRAACFCHKRIVDIAYVCSVCLSVFCEFSPVCT 384 L GLYLEH+ VG+AQY+ TFLPSQSCRKYLKLR QQSVDFRAACFCHKR+VDIAYVCSVCLSVFCEFSPVCT Sbjct: 15 LPGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCT 88
BLAST of mRNA_M-pyrifera_M_contig8702.20233.1 vs. uniprot
Match: A0A433QAY4_9FUNG (General transcription and DNA repair factor IIH subunit TFB4 n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QAY4_9FUNG) HSP 1 Score: 144 bits (362), Expect = 1.640e-39 Identity = 73/128 (57.03%), Postives = 92/128 (71.88%), Query Frame = 1 Query: 7 IQARALVFSGAPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTKGLYLEHKEV-GIAQYLLTTFLPSQSCRKYLKLRKQQSVDFRAACFCHKRIVDIAYVCSVCLSVFCEFSPVCT 384 I+ R L S +PD Y +MN IFSAQK+ + VD C V GE + FLQQAA++T G+YL+ ++ + QYL+ TFLP + R YL L Q VDFRAACFCHKRI+DI YVCSVCLS+FC+FSPVC+ Sbjct: 169 IKPRILAISVSPDSAFQYIPIMNCIFSAQKSSIPVDVCKVFGEDTVFLQQAAHITSGIYLKVEDPQSLLQYLMFTFLPDRYSRNYLCLPGQDQVDFRAACFCHKRIIDIGYVCSVCLSIFCDFSPVCS 296
BLAST of mRNA_M-pyrifera_M_contig8702.20233.1 vs. uniprot
Match: A0A8H7Q334_MORIS (General transcription and DNA repair factor IIH subunit TFB4 (Fragment) n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7Q334_MORIS) HSP 1 Score: 143 bits (361), Expect = 3.410e-39 Identity = 71/128 (55.47%), Postives = 91/128 (71.09%), Query Frame = 1 Query: 7 IQARALVFSGAPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTKGLYLE-HKEVGIAQYLLTTFLPSQSCRKYLKLRKQQSVDFRAACFCHKRIVDIAYVCSVCLSVFCEFSPVCT 384 I+ R LV S +PD P Y S+MNA+FSAQK + +D C + G FLQQAA++T G+YL+ + QYLL +FLP + R YL L ++ VDFRAACFCHKRI+DI YVCSVCLS+FC +SPVC+ Sbjct: 179 IKPRILVLSVSPDSPYQYISIMNAVFSAQKMSIPIDVCKIFGGEVAFLQQAAHITGGVYLDVENPQALLQYLLFSFLPERYARNYLNLPNKEQVDFRAACFCHKRIIDIGYVCSVCLSIFCSWSPVCS 306
BLAST of mRNA_M-pyrifera_M_contig8702.20233.1 vs. uniprot
Match: A0A5D6XQC8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQC8_9STRA) HSP 1 Score: 142 bits (357), Expect = 5.040e-39 Identity = 72/130 (55.38%), Postives = 91/130 (70.00%), Query Frame = 1 Query: 7 IQARALVFSGAPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTKGLY---LEHKEVGIAQYLLTTFLPSQSCRKYLKLRKQQSVDFRAACFCHKRIVDIAYVCSVCLSVFCEFSPVCT 384 ++ R LV +PDV + Y S+MN IFSAQK V VD C + E S+FLQQAAYLT G+Y ++H G+ QYLL+ +LP S RK LKL Q SVDFRA CFCHK ++ A+VC VCLS+FCEF P+C+ Sbjct: 157 LRPRVLVIQKSPDVAQHYISIMNGIFSAQKKSVAVDACVLASEHSSFLQQAAYLTGGIYYKPIDHS--GLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKEVISTAFVCPVCLSLFCEFQPICS 284
BLAST of mRNA_M-pyrifera_M_contig8702.20233.1 vs. uniprot
Match: A0A662YF30_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YF30_9STRA) HSP 1 Score: 140 bits (352), Expect = 2.690e-38 Identity = 69/128 (53.91%), Postives = 90/128 (70.31%), Query Frame = 1 Query: 7 IQARALVFSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLG-ESSTFLQQAAYLTKGLYLEHKEVG-IAQYLLTTFLPSQSCRKYLKLRKQQSVDFRAACFCHKRIVDIAYVCSVCLSVFCEFSPVCT 384 ++ R LV APDV E Y ++MN IFSAQK V VD +L E S+F+QQAAYLT G+Y + + G + QYL++ +LP S RK LKL Q SVDFRA CFCH+ ++ A+VC VCLS+FCEF P+C+ Sbjct: 155 LRPRILVIQKAPDVSEHYIAIMNGIFSAQKKSVAVDACILSAEHSSFMQQAAYLTGGIYYKPNDAGGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAFVCPVCLSLFCEFRPICS 282
BLAST of mRNA_M-pyrifera_M_contig8702.20233.1 vs. uniprot
Match: A0A3R6W0Y7_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6W0Y7_9STRA) HSP 1 Score: 135 bits (340), Expect = 3.110e-38 Identity = 70/128 (54.69%), Postives = 87/128 (67.97%), Query Frame = 1 Query: 7 IQARALVFSGAPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTKGLYLEHKEV-GIAQYLLTTFLPSQSCRKYLKLRKQQSVDFRAACFCHKRIVDIAYVCSVCLSVFCEFSPVCT 384 +Q R LV +PD E Y S+MN IFSAQK V +D C + E S FLQQA+YLT G+Y + KE G+ QY L+ +L R+ LKL Q SVDFRA CFCHK+ + A+VC VCLS+FCEFSPVC+ Sbjct: 7 LQPRILVVDSSPDFAEQYISIMNCIFSAQKKHVPIDSCVLASEPSAFLQQASYLTGGIYFKPKEPQGLVQYFLSIWLADADTRQMLKLPTQASVDFRAMCFCHKQTISTAFVCPVCLSLFCEFSPVCS 134 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8702.20233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig8702.20233.1 >prot_M-pyrifera_M_contig8702.20233.1 ID=prot_M-pyrifera_M_contig8702.20233.1|Name=mRNA_M-pyrifera_M_contig8702.20233.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp MAIQARALVFSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQback to top mRNA from alignment at M-pyrifera_M_contig8702:2462..3610- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig8702.20233.1 ID=mRNA_M-pyrifera_M_contig8702.20233.1|Name=mRNA_M-pyrifera_M_contig8702.20233.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at M-pyrifera_M_contig8702:2462..3610- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig8702:2462..3610- >mRNA_M-pyrifera_M_contig8702.20233.1 ID=mRNA_M-pyrifera_M_contig8702.20233.1|Name=mRNA_M-pyrifera_M_contig8702.20233.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig8702:2462..3610- (Macrocystis pyrifera P11B4 male)back to top |