mRNA_M-pyrifera_M_contig1096.2014.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1096.2014.1
Unique NamemRNA_M-pyrifera_M_contig1096.2014.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig1096.2014.1 vs. uniprot
Match: A0A6H5JN05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN05_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.570e-32
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 DLIDGKCEKRRKGVFGPTAGKKFILFVDDVNMPTKEYYGAQPPIELLRQWFDSGGW 168
            DLIDGKCEKRRKGVFGPTAGKKFILFVDDVNMPTKE+YGAQPPIELLRQWFDSGGW
Sbjct: 1417 DLIDGKCEKRRKGVFGPTAGKKFILFVDDVNMPTKEFYGAQPPIELLRQWFDSGGW 1472
[Close]
BLAST of mRNA_M-pyrifera_M_contig1096.2014.1 vs. uniprot
Match: D8LF24_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF24_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 4.000e-32
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 DLIDGKCEKRRKGVFGPTAGKKFILFVDDVNMPTKEYYGAQPPIELLRQWFDSGGW 168
            DLIDGKCEKRRKGVFGPTAGKKFILFVDDVNMPTKE+YGAQPPIELLRQWFD+GGW
Sbjct: 2193 DLIDGKCEKRRKGVFGPTAGKKFILFVDDVNMPTKEFYGAQPPIELLRQWFDNGGW 2248
[Close]
BLAST of mRNA_M-pyrifera_M_contig1096.2014.1 vs. uniprot
Match: A0A835YSP2_9STRA (Dynein heavy chain and region D6 of dynein motor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSP2_9STRA)

HSP 1 Score: 117 bits (292), Expect = 3.750e-29
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:    1 DLIDGKCEKRRKGVFGPTAGKKFILFVDDVNMPTKEYYGAQPPIELLRQWFDSGGW 168
            DLIDGKCEKRRKGVFGP AGK+F+LFVDDVNMP +E YGAQPPIELLRQWFDSGGW
Sbjct: 1367 DLIDGKCEKRRKGVFGPPAGKQFVLFVDDVNMPQRETYGAQPPIELLRQWFDSGGW 1422
[Close]
BLAST of mRNA_M-pyrifera_M_contig1096.2014.1 vs. uniprot
Match: A0A482S135_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S135_9ARCH)

HSP 1 Score: 115 bits (289), Expect = 9.520e-29
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:    1 DLIDGKCEKRRKGVFGPTAGKKFILFVDDVNMPTKEYYGAQPPIELLRQWFDSGGW 168
            DLID KCEKRRKGVFGPTAGK+FI+FVDDVNMP KE YGAQPPIE+LRQWFD+GGW
Sbjct:  271 DLIDSKCEKRRKGVFGPTAGKEFIIFVDDVNMPMKEEYGAQPPIEILRQWFDNGGW 326
[Close]
BLAST of mRNA_M-pyrifera_M_contig1096.2014.1 vs. uniprot
Match: A0A7S4E7T1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7T1_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.140e-27
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 DLIDGKCEKRRKGVFGPTAGKKFILFVDDVNMPTKEYYGAQPPIELLRQWFDSGGW 168
            DL+D KCEKRRKG+FGP+AGKK+ILFVDDVNMP KE YGAQPPIELLRQWFD+ GW
Sbjct:  519 DLLDAKCEKRRKGIFGPSAGKKYILFVDDVNMPLKEEYGAQPPIELLRQWFDNRGW 574
[Close]
BLAST of mRNA_M-pyrifera_M_contig1096.2014.1 vs. uniprot
Match: A0A8J2SZZ7_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZZ7_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.140e-27
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 DLIDGKCEKRRKGVFGPTAGKKFILFVDDVNMPTKEYYGAQPPIELLRQWFDSGGW 168
            DL+D KCEKRRKG+FGP+AGKK+ILFVDDVNMP KE YGAQPPIELLRQWFD+ GW
Sbjct: 2147 DLLDAKCEKRRKGIFGPSAGKKYILFVDDVNMPLKEEYGAQPPIELLRQWFDNRGW 2202
[Close]
BLAST of mRNA_M-pyrifera_M_contig1096.2014.1 vs. uniprot
Match: F0YHW5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHW5_AURAN)

HSP 1 Score: 109 bits (273), Expect = 1.380e-26
Identity = 44/56 (78.57%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:    1 DLIDGKCEKRRKGVFGPTAGKKFILFVDDVNMPTKEYYGAQPPIELLRQWFDSGGW 168
            D +DGKCEKRRKG+FGP AGKK+++FVDDVNMP KE YGAQPPIE+LRQWFD+ GW
Sbjct: 2171 DQLDGKCEKRRKGIFGPAAGKKYVIFVDDVNMPMKEEYGAQPPIEILRQWFDNEGW 2226
[Close]
BLAST of mRNA_M-pyrifera_M_contig1096.2014.1 vs. uniprot
Match: A0A836CAS0_9STRA (Dynein heavy chain and region D6 of dynein motor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAS0_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.890e-26
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 DLIDGKCEKRRKGVFGPTAGKKFILFVDDVNMPTKEYYGAQPPIELLRQWFDSGGW 168
            D++DGKCEKRRKGVFGP  GK+F+L VDD+NMP +E YGAQPPIELLRQWFD GGW
Sbjct: 1496 DMVDGKCEKRRKGVFGPPGGKRFVLHVDDLNMPKRETYGAQPPIELLRQWFDQGGW 1551
[Close]
BLAST of mRNA_M-pyrifera_M_contig1096.2014.1 vs. uniprot
Match: A0A7S2CQZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CQZ8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 4.860e-26
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 DLIDGKCEKRRKGVFGPTAGKKFILFVDDVNMPTKEYYGAQPPIELLRQWFDSGGW 168
            D+ID K +KR++G FGP AGKKFI+ VDD+NMP +E YGAQPPIE+LRQWFD GGW
Sbjct:   26 DMIDAKLDKRKRGTFGPPAGKKFIVHVDDLNMPKREEYGAQPPIEILRQWFDQGGW 81
[Close]
BLAST of mRNA_M-pyrifera_M_contig1096.2014.1 vs. uniprot
Match: A0A7J6SFM2_PEROL (Dynein heavy chain 1, axonemal (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SFM2_PEROL)

HSP 1 Score: 105 bits (262), Expect = 9.270e-26
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 DLIDGKCEKRRKGVFGPTAGKKFILFVDDVNMPTKEYYGAQPPIELLRQWFDSGGW 168
            DLID K EKRR+GVFGP AGK+ ++FVDD+NMP KEYYGAQPPIELLRQW D GGW
Sbjct:   90 DLIDSKTEKRRRGVFGPPAGKQLVIFVDDLNMPQKEYYGAQPPIELLRQWHDHGGW 145
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1096.2014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JN05_9PHAE1.570e-3298.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF24_ECTSI4.000e-3296.43Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A835YSP2_9STRA3.750e-2989.29Dynein heavy chain and region D6 of dynein motor-d... [more]
A0A482S135_9ARCH9.520e-2987.50Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S4E7T1_9STRA2.140e-2783.93Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2SZZ7_9STRA2.140e-2783.93Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
F0YHW5_AURAN1.380e-2678.57Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A836CAS0_9STRA1.890e-2678.57Dynein heavy chain and region D6 of dynein motor-d... [more]
A0A7S2CQZ8_9STRA4.860e-2671.43Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7J6SFM2_PEROL9.270e-2678.57Dynein heavy chain 1, axonemal (Fragment) n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1096contigM-pyrifera_M_contig1096:28619..28789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue5.9e-27
Seed eggNOG ortholog2880.D8LF24
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.7762303-CDS-M-pyrifera_M_contig1096:28618..287891622815606.7762303-CDS-M-pyrifera_M_contig1096:28618..28789Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1096 28619..28789 +
1692277484.7457933-CDS-M-pyrifera_M_contig1096:28618..287891692277484.7457933-CDS-M-pyrifera_M_contig1096:28618..28789Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1096 28619..28789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1096.2014.1prot_M-pyrifera_M_contig1096.2014.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1096 28619..28789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1096.2014.1

>prot_M-pyrifera_M_contig1096.2014.1 ID=prot_M-pyrifera_M_contig1096.2014.1|Name=mRNA_M-pyrifera_M_contig1096.2014.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
DLIDGKCEKRRKGVFGPTAGKKFILFVDDVNMPTKEYYGAQPPIELLRQW
FDSGGW*
back to top

mRNA from alignment at M-pyrifera_M_contig1096:28619..28789+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1096.2014.1 ID=mRNA_M-pyrifera_M_contig1096.2014.1|Name=mRNA_M-pyrifera_M_contig1096.2014.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig1096:28619..28789+ (Macrocystis pyrifera P11B4 male)
GACTTGATCGACGGCAAGTGTGAGAAGCGTAGGAAGGGTGTCTTTGGCCC
CACCGCGGGAAAGAAGTTCATTCTTTTCGTGGATGACGTAAACATGCCGA
CCAAAGAGTACTACGGCGCGCAGCCGCCGATCGAGCTGCTCCGGCAATGG
TTCGACAGCGGTGGCTGGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig1096:28619..28789+

>mRNA_M-pyrifera_M_contig1096.2014.1 ID=mRNA_M-pyrifera_M_contig1096.2014.1|Name=mRNA_M-pyrifera_M_contig1096.2014.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig1096:28619..28789+ (Macrocystis pyrifera P11B4 male)
GACTTGATCGACGGCAAGTGTGAGAAGCGTAGGAAGGGTGTCTTTGGCCC
CACCGCGGGAAAGAAGTTCATTCTTTTCGTGGATGACGTAAACATGCCGA
CCAAAGAGTACTACGGCGCGCAGCCGCCGATCGAGCTGCTCCGGCAATGG
TTCGACAGCGGTGGCTGGTGAGACTTGATCGACGGCAAGTGTGAGAAGCG
TAGGAAGGGTGTCTTTGGCCCCACCGCGGGAAAGAAGTTCATTCTTTTCG
TGGATGACGTAAACATGCCGACCAAAGAGTACTACGGCGCGCAGCCGCCG
ATCGAGCTGCTCCGGCAATGGTTCGACAGCGGTGGCTGGTGA
back to top