mRNA_M-pyrifera_M_contig86377.20117.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86377.20117.1
Unique NamemRNA_M-pyrifera_M_contig86377.20117.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86377.20117.1 vs. uniprot
Match: A0A7S2EIC9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EIC9_TRICV)

HSP 1 Score: 138 bits (347), Expect = 9.080e-40
Identity = 63/106 (59.43%), Postives = 83/106 (78.30%), Query Frame = 1 
Query:    1 LYKLHQMDIPYRCEICGGETYWGRLSYEQHFGKPLHTNNLKALGIPNTKHFFGVTGIEEAKRLWKRLEKDMSKSTWKAEEEEQYEDSQGNVLDRKTYEDLARQGLL 318
            L+KLH ++  Y CEICG E+Y GR ++E+HF +  H   ++ LGIPNT+HF GVT IE+A+RLW+RL +++ K  + AE EE+YEDS GNVL+RKTYEDLARQGLL
Sbjct:   41 LFKLHGLNHFYPCEICGNESYRGRRNFEKHFTESKHAYGMRCLGIPNTRHFHGVTKIEDAQRLWERLSREVEKDVYDAEREEEYEDSHGNVLNRKTYEDLARQGLL 146
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BLAST of mRNA_M-pyrifera_M_contig86377.20117.1 vs. uniprot
Match: A0A7S0F6F8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F6F8_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.850e-37
Identity = 61/106 (57.55%), Postives = 80/106 (75.47%), Query Frame = 1 
Query:    1 LYKLHQMDIPYRCEICGGETYWGRLSYEQHFGKPLHTNNLKALGIPNTKHFFGVTGIEEAKRLWKRLEKDMSKSTWKAEEEEQYEDSQGNVLDRKTYEDLARQGLL 318
            L+KLH ++  Y CEICG ETY GR ++E HF +  H+  ++ALGIPNTKHF GVT IE+A++LW+ L+  M  + + A +EE+YEDS GNVL R TYED+ARQGLL
Sbjct:   11 LFKLHGLNHFYTCEICGNETYRGRRNFELHFAETKHSLGMRALGIPNTKHFHGVTKIEDAQKLWESLQNKMDTNQFDAPKEEEYEDSHGNVLTRATYEDMARQGLL 116
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BLAST of mRNA_M-pyrifera_M_contig86377.20117.1 vs. uniprot
Match: A0A1E7FT72_9STRA (SF3a60_Prp9_C domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FT72_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.150e-36
Identity = 60/106 (56.60%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:    1 LYKLHQMDIPYRCEICGGETYWGRLSYEQHFGKPLHTNNLKALGIPNTKHFFGVTGIEEAKRLWKRLEKDMSKSTWKAEEEEQYEDSQGNVLDRKTYEDLARQGLL 318
            L+KLH ++  Y+CEICGGE+Y GR ++E HF +  H + +K LGIPNTKHF GVT IE+A+ LWK+L+  + +  +     E+YEDS GNVL R TYEDLARQGLL
Sbjct:   58 LFKLHGLNHFYKCEICGGESYRGRKNFETHFAEAKHLHGMKTLGIPNTKHFHGVTKIEDAQNLWKKLKDQLEQDQFDGTNGEEYEDSHGNVLSRATYEDLARQGLL 163
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BLAST of mRNA_M-pyrifera_M_contig86377.20117.1 vs. uniprot
Match: A0A7S1DCR6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCR6_CYCTE)

HSP 1 Score: 130 bits (326), Expect = 1.730e-36
Identity = 60/106 (56.60%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:    1 LYKLHQMDIPYRCEICGGETYWGRLSYEQHFGKPLHTNNLKALGIPNTKHFFGVTGIEEAKRLWKRLEKDMSKSTWKAEEEEQYEDSQGNVLDRKTYEDLARQGLL 318
            L+KLH ++  Y CEICG E+Y GR ++E+HF +  H   +K LGIPNTKHF GVT IE+A++LW +L+K + +  +    EE+YEDS GNVL R TYEDLARQGLL
Sbjct:   48 LFKLHGLNHFYPCEICGNESYRGRHNFEKHFAEAKHAYGMKCLGIPNTKHFHGVTKIEDAQQLWAKLQKSLEQERFDGTTEEEYEDSHGNVLSRSTYEDLARQGLL 153
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BLAST of mRNA_M-pyrifera_M_contig86377.20117.1 vs. uniprot
Match: A0A6V1NE02_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NE02_HETAK)

HSP 1 Score: 127 bits (320), Expect = 1.080e-35
Identity = 55/106 (51.89%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 LYKLHQMDIPYRCEICGGETYWGRLSYEQHFGKPLHTNNLKALGIPNTKHFFGVTGIEEAKRLWKRLEKDMSKSTWKAEEEEQYEDSQGNVLDRKTYEDLARQGLL 318
            LYKLH + + ++CE+CGG +Y GR ++++HF +  H + ++ LGIPNTKHF  +T IE+AK L+ +L+  +    W    EE+YEDS+GNVL+R+TYEDLARQGLL
Sbjct:   39 LYKLHGLGVEFKCEVCGGASYMGRRAFDRHFQEWRHAHGMRCLGIPNTKHFHDITTIEDAKALYAKLKAGLDGDAWDGAVEEEYEDSEGNVLNRRTYEDLARQGLL 144
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BLAST of mRNA_M-pyrifera_M_contig86377.20117.1 vs. uniprot
Match: A0A7S3V7X1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7X1_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.100e-35
Identity = 64/106 (60.38%), Postives = 82/106 (77.36%), Query Frame = 1 
Query:    1 LYKLHQMDIPYRCEICGGETYWGRLSYEQHFGKPLHTNNLKALGIPNTKHFFGVTGIEEAKRLWKRLEKDMSKSTWKAEEEEQYEDSQGNVLDRKTYEDLARQGLL 318
            L+KLH ++  Y CEICG E+Y GR ++E+HF +  HT  +K LGIPNTKHF GVT IE+A++LW +L+ D++K  + A  EE+YEDSQGNVL R TYEDLARQGLL
Sbjct:  790 LFKLHGLNHFYPCEICGNESYRGRHNFEKHFAEAKHTYGMKCLGIPNTKHFHGVTKIEDAQKLWNKLKLDVNKDIFDASREEEYEDSQGNVLSRATYEDLARQGLL 895
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BLAST of mRNA_M-pyrifera_M_contig86377.20117.1 vs. uniprot
Match: A0A4S4D1N8_CAMSI (Matrin-type domain-containing protein n=1 Tax=Camellia sinensis var. sinensis TaxID=542762 RepID=A0A4S4D1N8_CAMSI)

HSP 1 Score: 127 bits (318), Expect = 3.380e-35
Identity = 53/106 (50.00%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 LYKLHQMDIPYRCEICGGETYWGRLSYEQHFGKPLHTNNLKALGIPNTKHFFGVTGIEEAKRLWKRLEKDMSKSTWKAEEEEQYEDSQGNVLDRKTYEDLARQGLL 318
            LYKLH +   ++CEICG  +YWGR +YE+HF +  H + ++ LGIPNTK+F  +T IEEAK+LW+R+++    + W+ + EE+YED +GN+ ++KTY DL RQGL+
Sbjct:   54 LYKLHGLGQEFKCEICGNHSYWGRRAYERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKQLWERIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 159
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BLAST of mRNA_M-pyrifera_M_contig86377.20117.1 vs. uniprot
Match: UPI00103623FF (splicing factor SF3a60 homolog n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI00103623FF)

HSP 1 Score: 127 bits (318), Expect = 4.020e-35
Identity = 53/106 (50.00%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 LYKLHQMDIPYRCEICGGETYWGRLSYEQHFGKPLHTNNLKALGIPNTKHFFGVTGIEEAKRLWKRLEKDMSKSTWKAEEEEQYEDSQGNVLDRKTYEDLARQGLL 318
            LYKLH +   ++CEICG  +YWGR +YE+HF +  H + ++ LGIPNTK+F  +T IEEAK+LW+R+++    + W+ + EE+YED +GN+ ++KTY DL RQGL+
Sbjct:   60 LYKLHGLGQEFKCEICGNHSYWGRRAYERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKQLWERIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 165
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BLAST of mRNA_M-pyrifera_M_contig86377.20117.1 vs. uniprot
Match: A0A2D4BU83_PYTIN (C2H2-type domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BU83_PYTIN)

HSP 1 Score: 136 bits (342), Expect = 5.550e-35
Identity = 57/106 (53.77%), Postives = 82/106 (77.36%), Query Frame = 1 
Query:    1 LYKLHQMDIPYRCEICGGETYWGRLSYEQHFGKPLHTNNLKALGIPNTKHFFGVTGIEEAKRLWKRLEKDMSKSTWKAEEEEQYEDSQGNVLDRKTYEDLARQGLL 318
            LYKLH + + Y+CEICG  +YWGR  +++HF +  H + ++ LGIPNTKHF  +TG+++A  L+++L+  + +  W AE+EE++EDS+GNVL RKTYEDLARQGLL
Sbjct: 2132 LYKLHGLGVEYKCEICGNHSYWGRREFDRHFQQWRHAHGMRCLGIPNTKHFHDITGMQDAIALYEKLKDQIDQENWNAEKEEEFEDSEGNVLSRKTYEDLARQGLL 2237
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BLAST of mRNA_M-pyrifera_M_contig86377.20117.1 vs. uniprot
Match: F0Y562_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y562_AURAN)

HSP 1 Score: 134 bits (336), Expect = 7.230e-35
Identity = 58/106 (54.72%), Postives = 80/106 (75.47%), Query Frame = 1 
Query:    1 LYKLHQMDIPYRCEICGGETYWGRLSYEQHFGKPLHTNNLKALGIPNTKHFFGVTGIEEAKRLWKRLEKDMSKSTWKAEEEEQYEDSQGNVLDRKTYEDLARQGLL 318
            LYKLH +D+ Y CEICG +TYWGR +++QHF +  H++ ++ L IPNTKHF GV  +++A  LW++L++      +K E +E+YEDS GNVL+R TYEDLARQGLL
Sbjct:  390 LYKLHGLDVSYVCEICGNQTYWGRRAFDQHFNEWRHSHGMRCLRIPNTKHFHGVVKMDDAVALWEQLQEKQDAEAFKPERDEEYEDSDGNVLNRATYEDLARQGLL 495
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86377.20117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2EIC9_TRICV9.080e-4059.43Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S0F6F8_9STRA2.850e-3757.55Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A1E7FT72_9STRA1.150e-3656.60SF3a60_Prp9_C domain-containing protein n=1 Tax=Fr... [more]
A0A7S1DCR6_CYCTE1.730e-3656.60Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A6V1NE02_HETAK1.080e-3551.89Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3V7X1_9STRA2.100e-3560.38Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A4S4D1N8_CAMSI3.380e-3550.00Matrin-type domain-containing protein n=1 Tax=Came... [more]
UPI00103623FF4.020e-3550.00splicing factor SF3a60 homolog n=1 Tax=Camellia si... [more]
A0A2D4BU83_PYTIN5.550e-3553.77C2H2-type domain-containing protein n=1 Tax=Pythiu... [more]
F0Y562_AURAN7.230e-3554.72Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86377contigM-pyrifera_M_contig86377:529..849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue3.9e-26
Seed eggNOG ortholog44056.XP_009035508.1
Preferred nameSF3A3
KEGG rclassRC00005,RC00443
KEGG koko:K01676,ko:K10777,ko:K12827
KEGG ReactionR00381,R01082
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko03040,ko03450,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map03040,map03450
KEGG ModuleM00009,M00011,M00173,M00352,M00374
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000389,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005737,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009566,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043900,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045292,GO:0045595,GO:0045694,GO:0046483,GO:0050789,GO:0050793,GO:0050794,GO:0051239,GO:0051704,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904,GO:2000026,GO:2000241
EggNOG free text desc.Subtilase family
EggNOG OGsCOG5188@1,KOG2636@2759
EC4.2.1.2,6.5.1.1
COG Functional cat.AO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Exons1
Model size321
Cds size303
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.7108054-CDS-M-pyrifera_M_contig86377:528..8311622816773.7108054-CDS-M-pyrifera_M_contig86377:528..831Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86377 529..831 -
1692278170.2715156-CDS-M-pyrifera_M_contig86377:528..8311692278170.2715156-CDS-M-pyrifera_M_contig86377:528..831Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86377 529..831 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.7219412-UTR-M-pyrifera_M_contig86377:831..8491622816773.7219412-UTR-M-pyrifera_M_contig86377:831..849Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86377 832..849 -
1692278170.2864065-UTR-M-pyrifera_M_contig86377:831..8491692278170.2864065-UTR-M-pyrifera_M_contig86377:831..849Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86377 832..849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86377.20117.1prot_M-pyrifera_M_contig86377.20117.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86377 529..831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86377.20117.1

>prot_M-pyrifera_M_contig86377.20117.1 ID=prot_M-pyrifera_M_contig86377.20117.1|Name=mRNA_M-pyrifera_M_contig86377.20117.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
MDIPYRCEICGGETYWGRLSYEQHFGKPLHTNNLKALGIPNTKHFFGVTG
IEEAKRLWKRLEKDMSKSTWKAEEEEQYEDSQGNVLDRKTYEDLARQGLL
*
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mRNA from alignment at M-pyrifera_M_contig86377:529..849-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86377.20117.1 ID=mRNA_M-pyrifera_M_contig86377.20117.1|Name=mRNA_M-pyrifera_M_contig86377.20117.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig86377:529..849- (Macrocystis pyrifera P11B4 male)
TTGTACAAGTTGCATCAAATGGACATCCCATATCGTTGTGAAATCTGTGG
TGGTGAAACATACTGGGGAAGATTAAGTTATGAACAACACTTTGGAAAGC
CACTTCATACCAACAACCTCAAAGCACTTGGAATTCCAAATACAAAACAC
TTCTTTGGTGTCACGGGCATTGAAGAAGCAAAGAGATTGTGGAAGAGGCT
AGAGAAGGACATGTCCAAATCTACGTGGAAAGCTGAAGAAGAGGAACAAT
ATGAAGACTCACAAGGCAATGTCCTTGATCGCAAGACATATGAAGATCTC
GCAAGACAAGGGTTATTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86377:529..849-

>mRNA_M-pyrifera_M_contig86377.20117.1 ID=mRNA_M-pyrifera_M_contig86377.20117.1|Name=mRNA_M-pyrifera_M_contig86377.20117.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig86377:529..849- (Macrocystis pyrifera P11B4 male)
ATGGACATCCCATATCGTTGTGAAATCTGTGGTGGTGAAACATACTGGGG
AAGATTAAGTTATGAACAACACTTTGGAAAGCCACTTCATACCAACAACC
TCAAAGCACTTGGAATTCCAAATACAAAACACTTCTTTGGTGTCACGGGC
ATTGAAGAAGCAAAGAGATTGTGGAAGAGGCTAGAGAAGGACATGTCCAA
ATCTACGTGGAAAGCTGAAGAAGAGGAACAATATGAAGACTCACAAGGCA
ATGTCCTTGATCGCAAGACATATGAAGATCTCGCAAGACAAGGGTTATTG
TGAATGGACATCCCATATCGTTGTGAAATCTGTGGTGGTGAAACATACTG
GGGAAGATTAAGTTATGAACAACACTTTGGAAAGCCACTTCATACCAACA
ACCTCAAAGCACTTGGAATTCCAAATACAAAACACTTCTTTGGTGTCACG
GGCATTGAAGAAGCAAAGAGATTGTGGAAGAGGCTAGAGAAGGACATGTC
CAAATCTACGTGGAAAGCTGAAGAAGAGGAACAATATGAAGACTCACAAG
GCAATGTCCTTGATCGCAAGACATATGAAGATCTCGCAAGACAAGGGTTA
TTGTGA
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