mRNA_M-pyrifera_M_contig85723.19983.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85723.19983.1
Unique NamemRNA_M-pyrifera_M_contig85723.19983.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85723.19983.1 vs. uniprot
Match: A0A0G4HFR4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HFR4_9ALVE)

HSP 1 Score: 111 bits (277), Expect = 1.030e-28
Identity = 55/119 (46.22%), Postives = 77/119 (64.71%), Query Frame = 1 
Query:    1 QEQNTAMASIIVRGVTISALGELVSGLGQAFVDAL----SAGTFSVSQPHTGAVWITAVEGRWGSYNGQVVSCYYHPSKEHTATTVGKVGTKKSTAGAGHWAISTQTKALAGNKALYNT 345
            Q Q    A  I++G+ I A  +L   L     D L    +A  F +SQPH GAVWI+ ++G+WG++ GQ++S YYHP K H+AT+VG++G KKS   AG WA+S Q +A+ GNKA Y+T
Sbjct:   43 QRQRNLQAGTIIKGIAIPAAEKLAEKLADGAWDWLKDNANADLFQLSQPHPGAVWISVLDGQWGTWKGQLMSAYYHPEKGHSATSVGRLGKKKSVEAAGVWAVSLQPRAMFGNKAFYDT 161
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BLAST of mRNA_M-pyrifera_M_contig85723.19983.1 vs. uniprot
Match: A0E1Z8_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0E1Z8_PARTE)

HSP 1 Score: 96.7 bits (239), Expect = 1.200e-23
Identity = 52/107 (48.60%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:   28 IIVRGVTISALGELVSGLGQAFVDALSAGTFSVSQPHTGAVWITAVEGRWGSYNGQVVSCYYHPSKEHTATTVGKVGTKKSTAGAGHWAISTQTKALAGNKALYNTL 348
            IIV  VT + + + +  + Q       A  +S+SQP  G+VWI  ++G     NGQV+S +YHP+K HTATTVGK+G K+S AG G WA S QTK   GNKA YN L
Sbjct:    5 IIVAQVTEALIEDGIKLMRQIIGSYFDATCYSISQPAEGSVWIMYLDGNHYLQNGQVLSMFYHPTKRHTATTVGKLGQKQSVAGPGQWAYSNQTKGAYGNKAYYNIL 111
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BLAST of mRNA_M-pyrifera_M_contig85723.19983.1 vs. uniprot
Match: UPI0015EFE8D4 (lactococcin 972 family bacteriocin n=1 Tax=Streptomyces sp. WELS2 TaxID=2749435 RepID=UPI0015EFE8D4)

HSP 1 Score: 48.1 bits (113), Expect = 7.410e-5
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:  145 AVWITAVEGRW--GSYNGQVVSCYYHPSKEHTATTVGKVGTKKSTAGAGHWAISTQTKALAGNKALYNT 345
            A  ++   G W  G+    V S YYHPSK H +T+VGK   +  TA +G W+I+    AL+GNK  Y T
Sbjct:   26 ATTVSVGGGTWDYGAGTATVWSDYYHPSKCHGSTSVGKT-IQSDTAPSGDWSITQVEAALSGNKTYYKT 93
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85723.19983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0G4HFR4_9ALVE1.030e-2846.22Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0E1Z8_PARTE1.200e-2348.60Uncharacterized protein n=1 Tax=Paramecium tetraur... [more]
UPI0015EFE8D47.410e-542.03lactococcin 972 family bacteriocin n=1 Tax=Strepto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85723contigM-pyrifera_M_contig85723:196..546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.240233-CDS-M-pyrifera_M_contig85723:195..5281622816767.240233-CDS-M-pyrifera_M_contig85723:195..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85723 196..528 -
1692278166.360954-CDS-M-pyrifera_M_contig85723:195..5281692278166.360954-CDS-M-pyrifera_M_contig85723:195..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85723 196..528 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.2534425-UTR-M-pyrifera_M_contig85723:528..5461622816767.2534425-UTR-M-pyrifera_M_contig85723:528..546Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85723 529..546 -
1692278166.371751-UTR-M-pyrifera_M_contig85723:528..5461692278166.371751-UTR-M-pyrifera_M_contig85723:528..546Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85723 529..546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85723.19983.1prot_M-pyrifera_M_contig85723.19983.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85723 196..528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85723.19983.1

>prot_M-pyrifera_M_contig85723.19983.1 ID=prot_M-pyrifera_M_contig85723.19983.1|Name=mRNA_M-pyrifera_M_contig85723.19983.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MASIIVRGVTISALGELVSGLGQAFVDALSAGTFSVSQPHTGAVWITAVE
GRWGSYNGQVVSCYYHPSKEHTATTVGKVGTKKSTAGAGHWAISTQTKAL
AGNKALYNTL*
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mRNA from alignment at M-pyrifera_M_contig85723:196..546-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85723.19983.1 ID=mRNA_M-pyrifera_M_contig85723.19983.1|Name=mRNA_M-pyrifera_M_contig85723.19983.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig85723:196..546- (Macrocystis pyrifera P11B4 male)
CAAGAGCAGAACACAGCCATGGCATCGATCATCGTGAGGGGAGTGACCAT
CTCGGCACTTGGGGAGTTGGTGTCGGGCCTCGGCCAGGCATTCGTCGATG
CCCTCTCTGCAGGAACATTCAGCGTGAGCCAGCCCCACACTGGTGCCGTC
TGGATCACTGCAGTGGAGGGTCGGTGGGGAAGCTACAACGGGCAGGTGGT
GTCCTGCTACTACCATCCTTCGAAGGAGCACACCGCCACCACCGTGGGCA
AGGTCGGCACCAAGAAGTCCACTGCAGGCGCAGGCCATTGGGCTATCAGC
ACCCAGACGAAGGCGTTGGCAGGAAACAAGGCACTCTACAACACGCTGTA
A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85723:196..546-

>mRNA_M-pyrifera_M_contig85723.19983.1 ID=mRNA_M-pyrifera_M_contig85723.19983.1|Name=mRNA_M-pyrifera_M_contig85723.19983.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig85723:196..546- (Macrocystis pyrifera P11B4 male)
ATGGCATCGATCATCGTGAGGGGAGTGACCATCTCGGCACTTGGGGAGTT
GGTGTCGGGCCTCGGCCAGGCATTCGTCGATGCCCTCTCTGCAGGAACAT
TCAGCGTGAGCCAGCCCCACACTGGTGCCGTCTGGATCACTGCAGTGGAG
GGTCGGTGGGGAAGCTACAACGGGCAGGTGGTGTCCTGCTACTACCATCC
TTCGAAGGAGCACACCGCCACCACCGTGGGCAAGGTCGGCACCAAGAAGT
CCACTGCAGGCGCAGGCCATTGGGCTATCAGCACCCAGACGAAGGCGTTG
GCAGGAAACAAGGCACTCTACAACACGCTGTAAATGGCATCGATCATCGT
GAGGGGAGTGACCATCTCGGCACTTGGGGAGTTGGTGTCGGGCCTCGGCC
AGGCATTCGTCGATGCCCTCTCTGCAGGAACATTCAGCGTGAGCCAGCCC
CACACTGGTGCCGTCTGGATCACTGCAGTGGAGGGTCGGTGGGGAAGCTA
CAACGGGCAGGTGGTGTCCTGCTACTACCATCCTTCGAAGGAGCACACCG
CCACCACCGTGGGCAAGGTCGGCACCAAGAAGTCCACTGCAGGCGCAGGC
CATTGGGCTATCAGCACCCAGACGAAGGCGTTGGCAGGAAACAAGGCACT
CTACAACACGCTGTAA
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