mRNA_M-pyrifera_M_contig85628.19965.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85628.19965.1
Unique NamemRNA_M-pyrifera_M_contig85628.19965.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85628.19965.1 vs. uniprot
Match: UPI0018AC3859 (phosphatase PAP2 family protein n=1 Tax=Clostridium sp. 1001270J_160509_D11 TaxID=2787103 RepID=UPI0018AC3859)

HSP 1 Score: 62.8 bits (151), Expect = 4.860e-9
Identity = 42/126 (33.33%), Postives = 70/126 (55.56%), Query Frame = 1
Query:   10 LAPAVLYATQPFRGNLHLLFATHTTGVLIASLKWAIHSPRPMWITRELPAVWGVAEWTFATPSGHSGILTTLYILALAT-QPLWIAILGSFLLWAITGLSRMYFGVHWNQEVLLGGLVGAVVGIVF 384
            L  A++Y     +    LLFA   +  + ++LK    SPRP+  ++ L ++       ++ PSGH+   TT++   +   +  WIA+LG  ++    G+SR+Y GVHW Q+VL G ++G +V IVF
Sbjct:   33 LIAAIMYWCVDKKCGQRLLFAVTGSITINSALKNFFKSPRPI-DSKNLQSLRTETATGYSFPSGHTQTATTVWTAIIDYFRKWWIALLGIIMILG-AGISRLYLGVHWPQDVLAGWIIGILVSIVF 156          
BLAST of mRNA_M-pyrifera_M_contig85628.19965.1 vs. uniprot
Match: H1A8L8_9BACT (PA-phosphatase related phosphoesterase n=2 Tax=Bacteria TaxID=2 RepID=H1A8L8_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 1.000e-8
Identity = 40/121 (33.06%), Postives = 62/121 (51.24%), Query Frame = 1
Query:    1 FFTLAPAVLYATQPFRGNLHLLFATHTTGVLIASLKWAIHSPRPMWITRELPAVWGVAEWTFATPSGHSGILTTLYILALATQPLWIAILGSFLLWAITGLSRMYFGVHWNQEVLLGGLVG 363
            FF L    LY        L +     ++G L + LK   H PRP W++ ++  + G  E +F  PSGH+ +   ++ +  A    W A + + LL    GLSR+Y GVH+ Q+V+ G L+G
Sbjct:   33 FFLLVLPALYWNLDASLGLRVGVILLSSGALNSLLKMFFHMPRPYWVSEKVIPMAG--ETSFGIPSGHAQVSVGVWGMVAAWVRRWWATVAAVLLVFCIGLSRIYLGVHFPQDVVAGWLLG 151          
BLAST of mRNA_M-pyrifera_M_contig85628.19965.1 vs. uniprot
Match: A0A353H417_9CHLR (acidPPc domain-containing protein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A353H417_9CHLR)

HSP 1 Score: 62.0 bits (149), Expect = 1.020e-8
Identity = 40/110 (36.36%), Postives = 64/110 (58.18%), Query Frame = 1
Query:   46 RGNLHLLFATHTTGVLIASLKWAIHSPRPMWITRELPAVWGVAEWTFATPSGHSGILTTLY-ILALATQPLWIAILGSFLLWAITGLSRMYFGVHWNQEVLLGGLVGAVV 372
            R  L L+F+ HT  +L    K + H+PRP W+  ++ A    AE +F  PSGHS    +++  +A + +  W   L  F+++ I GLSR+Y GVH+ Q+VL G  +G ++
Sbjct:   57 RTALMLVFSVHTNTLL----KMSFHTPRPYWVDSQVKAF--SAETSFGLPSGHSTNAVSIWGTVARSFKRGWFTALMIFVMFMI-GLSRVYLGVHFVQDVLAGWALGGLI 159          
BLAST of mRNA_M-pyrifera_M_contig85628.19965.1 vs. uniprot
Match: A0A2N2MKZ0_9CHLR (Phosphoesterase PA-phosphatase n=1 Tax=Chloroflexi bacterium HGW-Chloroflexi-6 TaxID=2013729 RepID=A0A2N2MKZ0_9CHLR)

HSP 1 Score: 62.0 bits (149), Expect = 1.030e-8
Identity = 45/127 (35.43%), Postives = 70/127 (55.12%), Query Frame = 1
Query:    1 FFTLAPAVLYATQPFRGNLHLLFATHTTGVLIASLKWAIHSPRPMWITRELPAVWGVAEWTFATPSGHSGILTTLY-ILA--LATQPLWIAILGSFLLWAITGLSRMYFGVHWNQEVLLGGLVGAVV 372
            FF L   VLY +      L +       G +  + K A+H PRP W + ++ A    AE +F  PSGH+ I + ++ +LA  L  +  W+     F++ A+ GLSR+Y GVH+  +VLLG L+G++V
Sbjct:   37 FFLLVLPVLYWSVNADLGLRIGVILLLNGAVNDAFKLALHGPRPYWFSADVKAF--SAETSFGVPSGHAQIASGVWGMLAARLGRRVFWVV--AVFII-AMIGLSRLYLGVHFPHDVLLGWLLGSLV 158          
BLAST of mRNA_M-pyrifera_M_contig85628.19965.1 vs. uniprot
Match: A0A0P6XXC4_9CHLR (acidPPc domain-containing protein n=1 Tax=Levilinea saccharolytica TaxID=229921 RepID=A0A0P6XXC4_9CHLR)

HSP 1 Score: 61.2 bits (147), Expect = 1.970e-8
Identity = 48/133 (36.09%), Postives = 72/133 (54.14%), Query Frame = 1
Query:    1 FFTLAPAVLY----ATQPFRGNLHLLFATHTTGVLIASLKWAIHSPRPMWITRELPAVWGVAEWTFATPSGHSGILTTLYILALAT-QPLWIAILGSFLLWAITGLSRMYFGVHWNQEVLLGGLVGAVVGIVF 384
            FF LA   L+    A+  FR  + L+ +        A  K    SPRP WI   + A    AE +F  PSGHS    +L+ LA A     W+ ++ S +++ + GLSR+Y GVH+ ++VLLG ++GA++ I F
Sbjct:   37 FFLLAMPFLFWCVNASLGFRIGVMLMLSNAVN----AFFKVLFRSPRPYWIEPRVTAY--TAETSFGVPSGHSQNSASLWGLAAAKINRRWVWVVFSLVVFGV-GLSRLYLGVHFVRDVLLGWILGALLVIAF 162          
BLAST of mRNA_M-pyrifera_M_contig85628.19965.1 vs. uniprot
Match: A0A2M8LC82_9BACT (acidPPc domain-containing protein n=1 Tax=Candidatus Taylorbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_41_48 TaxID=1975024 RepID=A0A2M8LC82_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 2.270e-8
Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 1
Query:   46 RGNLHLLFATHTTGVLIASLKWAIHSPRPMWITRELPAVWG-VAEWTFATPSGHSGILTTLYILALATQPLWIAI-LGSFLLWAITGLSRMYFGVHWNQEVLLGGLVGAVVGIVF 384
            R  L +      +GVL+  LK  I +PRP WI    P+V+G V E  F  PSGH+ I   +        P  +++ LG   +    GLSR+Y GVH+  +V++G L+G ++ I+F
Sbjct:   55 RTALEIFIIFIVSGVLVYVLKHLIEAPRPYWID---PSVFGYVVEKDFGMPSGHALISIVVLGWLWLRHPRSLSLSLGVGTILIFVGLSRIYLGVHYPSQVVVGWLIGIILLIIF 166          
BLAST of mRNA_M-pyrifera_M_contig85628.19965.1 vs. uniprot
Match: A0A3B9PA59_9CHLR (acidPPc domain-containing protein n=3 Tax=Anaerolineaceae TaxID=292628 RepID=A0A3B9PA59_9CHLR)

HSP 1 Score: 60.1 bits (144), Expect = 4.810e-8
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  106 KWAIHSPRPMWITRELPAVWGVAEWTFATPSGHSGILTTLY-ILALATQPLWIAILGSFLLWAITGLSRMYFGVHWNQEVLLGGLVGA 366
            K+  H+PRP W++ ++ A     E +F  PSGH+ I  T++  LA+  +  W  IL   L++ I G SR+Y GVH+  +VLLG  +GA
Sbjct:   66 KFLFHTPRPYWVSDQVQAY--SHETSFGLPSGHAQIAATMWGWLAVEVKKRWFKILALILIFLIGG-SRLYLGVHFLSDVLLGWTLGA 150          
BLAST of mRNA_M-pyrifera_M_contig85628.19965.1 vs. uniprot
Match: A0A7C4K0W3_9CHLR (Phosphatase PAP2 family protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C4K0W3_9CHLR)

HSP 1 Score: 59.7 bits (143), Expect = 6.770e-8
Identity = 34/89 (38.20%), Postives = 51/89 (57.30%), Query Frame = 1
Query:  100 SLKWAIHSPRPMWITRELPAVWGVAEWTFATPSGHSGILTTLYILALATQPLWIAILGSFLLWAITGLSRMYFGVHWNQEVLLGGLVGA 366
            SLK A H+PRP W +  +  +   AE +F  PSGH+     ++ +A A      A L + +L  + G SR+Y GVH+ Q+VL+G  +GA
Sbjct:   70 SLKMAFHTPRPYWFSASVKPL--SAESSFGVPSGHAQNAVAIWGIAAAYLNKRWAWLSAIMLMLLIGFSRLYLGVHFPQDVLVGWGIGA 156          
BLAST of mRNA_M-pyrifera_M_contig85628.19965.1 vs. uniprot
Match: A0A078AEH6_STYLE (Lipid phosphate n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AEH6_STYLE)

HSP 1 Score: 59.3 bits (142), Expect = 7.730e-8
Identity = 39/117 (33.33%), Postives = 61/117 (52.14%), Query Frame = 1
Query:   58 HLLFATHTTGVLIASLKWAIHSPRPMWI-TRELPAVWGVAEWTFATPSGHSGILTTLYILAL-------ATQPLWIAILGSFLLWAITGLSRMYFGVHWNQEVLLGGLVGAVVGIVF 384
            +++  +  TG++   +K  +  PRP W+  +E+     V E TFATPS HS I+  + I  L       A  P+ IA+        +   SRMYFGVH+ Q+V++G ++G   G  F
Sbjct:   72 YIVMVSGYTGLITGIIKNLMKVPRPQWLYPKEIKKYIFVTESTFATPSAHSSIIICVSIFYLEEYLQPEARYPVLIAVS------LLVATSRMYFGVHYLQDVIIGLIIGYCFGFGF 182          
BLAST of mRNA_M-pyrifera_M_contig85628.19965.1 vs. uniprot
Match: E8MYQ6_ANATU (Phosphatase n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) TaxID=926569 RepID=E8MYQ6_ANATU)

HSP 1 Score: 59.3 bits (142), Expect = 9.120e-8
Identity = 43/130 (33.08%), Postives = 69/130 (53.08%), Query Frame = 1
Query:    1 FFTLAPAVLYATQPFRGNLHLLFATHTTGVLIASLKWAIHSPRPMWITRELPAVWGVAEWTFATPSGHSGILTTLYILALATQPLW-------IAILGSFLLWAITGLSRMYFGVHWNQEVLLGGLVGAV 369
            F  + PAV +  +P R  + L +    T  +    K A H+PRP W++ E+ A+   +E +F  PSGH+     L+ LA +TQ  W       +AI+       + G+SR+Y G+H+  +VL+G  +GAV
Sbjct:   35 FLMVMPAVYWCIEP-RLGIRLGWMLVLTNWVNGIAKLAFHAPRPYWVSAEVKAL--SSETSFGMPSGHAQNAAALWGLA-STQVQWRWFRWLSLAII------LLIGISRIYLGMHFAGDVLVGWAIGAV 154          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85628.19965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0018AC38594.860e-933.33phosphatase PAP2 family protein n=1 Tax=Clostridiu... [more]
H1A8L8_9BACT1.000e-833.06PA-phosphatase related phosphoesterase n=2 Tax=Bac... [more]
A0A353H417_9CHLR1.020e-836.36acidPPc domain-containing protein n=1 Tax=Anaeroli... [more]
A0A2N2MKZ0_9CHLR1.030e-835.43Phosphoesterase PA-phosphatase n=1 Tax=Chloroflexi... [more]
A0A0P6XXC4_9CHLR1.970e-836.09acidPPc domain-containing protein n=1 Tax=Leviline... [more]
A0A2M8LC82_9BACT2.270e-835.65acidPPc domain-containing protein n=1 Tax=Candidat... [more]
A0A3B9PA59_9CHLR4.810e-839.77acidPPc domain-containing protein n=3 Tax=Anaeroli... [more]
A0A7C4K0W3_9CHLR6.770e-838.20Phosphatase PAP2 family protein n=1 Tax=Anaeroline... [more]
A0A078AEH6_STYLE7.730e-833.33Lipid phosphate n=1 Tax=Stylonychia lemnae TaxID=5... [more]
E8MYQ6_ANATU9.120e-833.08Phosphatase n=1 Tax=Anaerolinea thermophila (strai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85628contigM-pyrifera_M_contig85628:327..825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816766.1054494-CDS-M-pyrifera_M_contig85628:326..3931622816766.1054494-CDS-M-pyrifera_M_contig85628:326..393Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85628 327..393 -
1692278165.5366645-CDS-M-pyrifera_M_contig85628:326..3931692278165.5366645-CDS-M-pyrifera_M_contig85628:326..393Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85628 327..393 -
1622816766.1162746-CDS-M-pyrifera_M_contig85628:502..8251622816766.1162746-CDS-M-pyrifera_M_contig85628:502..825Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85628 503..825 -
1692278165.5462992-CDS-M-pyrifera_M_contig85628:502..8251692278165.5462992-CDS-M-pyrifera_M_contig85628:502..825Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85628 503..825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85628.19965.1prot_M-pyrifera_M_contig85628.19965.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85628 327..825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85628.19965.1

>prot_M-pyrifera_M_contig85628.19965.1 ID=prot_M-pyrifera_M_contig85628.19965.1|Name=mRNA_M-pyrifera_M_contig85628.19965.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
FFTLAPAVLYATQPFRGNLHLLFATHTTGVLIASLKWAIHSPRPMWITRE
LPAVWGVAEWTFATPSGHSGILTTLYILALATQPLWIAILGSFLLWAITG
LSRMYFGVHWNQEVLLGGLVGAVVGIVFAI
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mRNA from alignment at M-pyrifera_M_contig85628:327..825-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85628.19965.1 ID=mRNA_M-pyrifera_M_contig85628.19965.1|Name=mRNA_M-pyrifera_M_contig85628.19965.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=499bp|location=Sequence derived from alignment at M-pyrifera_M_contig85628:327..825- (Macrocystis pyrifera P11B4 male)
TTTTTCACCTTGGCCCCTGCGGTTTTGTACGCCACGCAACCTTTTCGGGG CAACCTGCATCTCTTGTTTGCAACACACACCACTGGAGTGCTCATCGCAA GCCTCAAATGGGCCATTCATTCTCCTCGACCAATGTGGATCACGCGAGAG CTCCCTGCAGTGTGGGGAGTTGCAGAGTGGACATTTGCAACTCCTTCGGG TCACTCAGGCATTCTCACCACCCTCTACATCCTTGCACTCGCCACACAAC CTCTTTGGATTGCCATCTTGGGATCATTCCTTCTTTGGGCCATCACAGGG CTTAGTCGCATGTACTTTGGTGTGTAAGGAAACATATCCACGCCCTCCAA CCATTCCCCTCCCTCCTCCCAAACCTCTCTTTCCCCCCTTCCCCCCACTC ACCTTCTCCCTTCTCTTTTTTTCTTCCAACAGGCACTGGAACCAGGAAGT CTTGCTCGGTGGATTGGTCGGCGCCGTGGTTGGAATAGTGTTTGCCATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85628:327..825-

>mRNA_M-pyrifera_M_contig85628.19965.1 ID=mRNA_M-pyrifera_M_contig85628.19965.1|Name=mRNA_M-pyrifera_M_contig85628.19965.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig85628:327..825- (Macrocystis pyrifera P11B4 male)
TTTTTCACCTTGGCCCCTGCGGTTTTGTACGCCACGCAACCTTTTCGGGG
CAACCTGCATCTCTTGTTTGCAACACACACCACTGGAGTGCTCATCGCAA
GCCTCAAATGGGCCATTCATTCTCCTCGACCAATGTGGATCACGCGAGAG
CTCCCTGCAGTGTGGGGAGTTGCAGAGTGGACATTTGCAACTCCTTCGGG
TCACTCAGGCATTCTCACCACCCTCTACATCCTTGCACTCGCCACACAAC
CTCTTTGGATTGCCATCTTGGGATCATTCCTTCTTTGGGCCATCACAGGG
CTTAGTCGCATGTACTTTGGTGTTTTTTCACCTTGGCCCCTGCGGTTTTG
TACGCCACGCAACCTTTTCGGGGCAACCTGCATCTCTTGTTTGCAACACA
CACCACTGGAGTGCTCATCGCAAGCCTCAAATGGGCCATTCATTCTCCTC
GACCAATGTGGATCACGCGAGAGCTCCCTGCAGTGTGGGGAGTTGCAGAG
TGGACATTTGCAACTCCTTCGGGTCACTCAGGCATTCTCACCACCCTCTA
CATCCTTGCACTCGCCACACAACCTCTTTGGATTGCCATCTTGGGATCAT
TCCTTCTTTGGGCCATCACAGGGCTTAGTCGCATGTACTTTGGTGTGCAC
TGGAACCAGGAAGTCTTGCTCGGTGGATTGGTCGGCGCCGTGGTTGGAAT
AGTGTTTGCCATTGCACTGGAACCAGGAAGTCTTGCTCGGTGGATTGGTC
GGCGCCGTGGTTGGAATAGTGTTTGCCATT
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