mRNA_M-pyrifera_M_contig85611.19962.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85611.19962.1
Unique NamemRNA_M-pyrifera_M_contig85611.19962.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig85611.19962.1 vs. uniprot
Match: A0A2E7KA18_9PLAN (Uncharacterized protein n=7 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KA18_9PLAN)

HSP 1 Score: 480 bits (1236), Expect = 1.150e-168
Identity = 236/249 (94.78%), Postives = 243/249 (97.59%), Query Frame = 1 
Query:    1 MTNKVTAMKPFIVCCIFCALPMTARATDRYYFDIHVQSPSGHYQVDATSPDNQGPDLKAFQANFTYKCVDTRTGKTIWTRKQPMREPQRYTFGDSSFEIAVPKEGSPRIIIVSNLGAAAILAANDNLITISSQGKKTEEIDLLKDALQKEESERLMYHSWGGSNWSRLAAWYFFELPEGEIFVIRPAWGPRILVDVNKGKLVSGDVSLIGPALEAEKQLVLSASRNKIELEDHEWSLLQAAYLAGRLNL 747
            MTNKVTAMKPFIVCCI CALPMTARATDRYYFDIHVQSPSGHYQVDATSPDNQGP+ KAFQANFTYKCVDTRTGKTIWTRKQPMREPQR+ FGDSSFEIAVPKEGSPRIIIVSNLGAAAILAAND+LITIS QG+KT EIDL+KDALQKEESERLMYHSWGGSNWSRLAAWYFFELPEGEIFVIRPAWGPRIL+DVNKGKLVSGDVSLIGPAL+AEKQLVLSASRNKIELEDHEWSLLQAAYLAG LNL
Sbjct:    1 MTNKVTAMKPFIVCCILCALPMTARATDRYYFDIHVQSPSGHYQVDATSPDNQGPNGKAFQANFTYKCVDTRTGKTIWTRKQPMREPQRFNFGDSSFEIAVPKEGSPRIIIVSNLGAAAILAANDHLITISPQGQKTGEIDLVKDALQKEESERLMYHSWGGSNWSRLAAWYFFELPEGEIFVIRPAWGPRILLDVNKGKLVSGDVSLIGPALQAEKQLVLSASRNKIELEDHEWSLLQAAYLAGSLNL 249
[Close]
BLAST of mRNA_M-pyrifera_M_contig85611.19962.1 vs. uniprot
Match: A0A518IFD4_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IFD4_9PLAN)

HSP 1 Score: 260 bits (664), Expect = 4.170e-82
Identity = 135/242 (55.79%), Postives = 170/242 (70.25%), Query Frame = 1 
Query:   22 MKPFIVCCIFCALPMTARATDRYYFDIHVQSPSGHYQVDATSPDNQGPDLKAFQANFTYKCVDTRTGKTIWTRKQPMREPQRYTFGDSSFEIAVPKEGSPRIIIVSNLGAAAILAANDNLITISSQGKKTEEIDLLKDALQKEESERLMYHSWGGSNWSRLAAWYFFELPEGEIFVIRPAWGPRILVDVNKGKLVSGDVSLIGPALEAEKQLVLSASRNKIELEDHEWSLLQAAYLAGRLNL 747
            MK  I CC+F AL   A ATDRYYFDIHV+S SG YQV+ATSPD +     AFQANFTYKCVDT++GKTIWTRKQPM++PQ + F + SFE A+PKEGSP +I VS+ G A IL + D+LI +SS+G+K  E D LKDAL ++E ++ ++    G +WSR  AWYF +LP  ++FVIR  WG RI V+  KGKLV    +L   A E EK+LV++    K E ++HE S L AAYLAG L L
Sbjct:    1 MKLIIACCVFFALTPAAHATDRYYFDIHVRSQSGQYQVNATSPDKE-----AFQANFTYKCVDTKSGKTIWTRKQPMQKPQLFKFPNGSFEYAIPKEGSPVMIFVSDHGTAVILTSRDHLIVVSSKGQKVGESDFLKDALTEDEIDQFVHRWLLGQSWSRFNAWYFLDLPGRKLFVIRSGWGRRIFVNALKGKLVQSSQALEADAEEREKKLVMATLSLKEEPDNHELSKLAAAYLAGILKL 237
[Close]
BLAST of mRNA_M-pyrifera_M_contig85611.19962.1 vs. uniprot
Match: A0A517RIE3_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RIE3_9PLAN)

HSP 1 Score: 145 bits (365), Expect = 3.310e-38
Identity = 79/166 (47.59%), Postives = 107/166 (64.46%), Query Frame = 1 
Query:  250 MREPQRYTFGDSSFEIAVPKEGSPRIIIVSNLGAAAILAANDNLITISSQGKKTEEIDLLKDALQKEESERLMYHSWGGSNWSRLAAWYFFELPEGEIFVIRPAWGPRILVDVNKGKLVSGDVSLIGPALEAEKQLVLSASRNKIELEDHEWSLLQAAYLAGRLNL 747
            M EPQR +  DS  EI +P+EGSP  I VS+ G   I  + DNLI +S +GK   +IDLLKDA  + E+ + ++ +  G  WS L+AWY+ +LP+GEIFV+RP WG  I VDV++GKL     +     L+ E++LV+SA  +K E  DHE+S   AAYLAG L L
Sbjct:    1 MGEPQRLS-EDSDIEIVLPREGSPVSIYVSDRGTTLIRNSADNLIVVSPEGKDVGKIDLLKDAFTETENRQYVHDTTAGPYWSGLSAWYYLDLPQGEIFVVRPWWGRHIFVDVSRGKLARSSQAFEVATLKTEEKLVMSALSSKEEPADHEFSKYGAAYLAGILKL 165
[Close]
BLAST of mRNA_M-pyrifera_M_contig85611.19962.1 vs. uniprot
Match: A0A257LMK9_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobiales bacterium VVV1 TaxID=2015575 RepID=A0A257LMK9_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 4.780e-10
Identity = 47/141 (33.33%), Postives = 62/141 (43.97%), Query Frame = 1 
Query:    1 MTNKVTAMKPFIVCCIFCAL----PMTARATDRYYFDIHVQSPSGHYQVDATSPDNQGPDLKA-FQANFTYKCVDTRTGKTIWTRKQPMREPQRYTFGDSSFEIAVPKEGSPRIIIVSNLGAAAILAANDNLITISSQGKK 408
            +++    M  FI   IF  L    P  A ATDR+Y DI ++SPS HY+ +A SPDN+    +  FQ++F Y   D  T K +WT  Q    P                   P    VS+ G   I    D LI I   GK+
Sbjct:   64 LSSSAVDMNSFIAAVIFTGLLSLIPGPALATDRFYSDISIESPSKHYRFEAKSPDNRNKSEQIPFQSSFAYTFTDLNTKKILWTGSQGKGMP-------------------PVDAFVSDAGWTVIRTGWDELIAIDLTGKE 185
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85611.19962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2E7KA18_9PLAN1.150e-16894.78Uncharacterized protein n=7 Tax=Gimesia TaxID=1649... [more]
A0A518IFD4_9PLAN4.170e-8255.79Uncharacterized protein n=1 Tax=Gimesia fumaroli T... [more]
A0A517RIE3_9PLAN3.310e-3847.59Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]
A0A257LMK9_9BACT4.780e-1033.33Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85611contigM-pyrifera_M_contig85611:114..860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size747
Cds size747
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816766.0103016-CDS-M-pyrifera_M_contig85611:113..8601622816766.0103016-CDS-M-pyrifera_M_contig85611:113..860Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85611 114..860 +
1692278165.49538-CDS-M-pyrifera_M_contig85611:113..8601692278165.49538-CDS-M-pyrifera_M_contig85611:113..860Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85611 114..860 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85611.19962.1prot_M-pyrifera_M_contig85611.19962.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85611 114..860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85611.19962.1

>prot_M-pyrifera_M_contig85611.19962.1 ID=prot_M-pyrifera_M_contig85611.19962.1|Name=mRNA_M-pyrifera_M_contig85611.19962.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=249bp
MTNKVTAMKPFIVCCIFCALPMTARATDRYYFDIHVQSPSGHYQVDATSP
DNQGPDLKAFQANFTYKCVDTRTGKTIWTRKQPMREPQRYTFGDSSFEIA
VPKEGSPRIIIVSNLGAAAILAANDNLITISSQGKKTEEIDLLKDALQKE
ESERLMYHSWGGSNWSRLAAWYFFELPEGEIFVIRPAWGPRILVDVNKGK
LVSGDVSLIGPALEAEKQLVLSASRNKIELEDHEWSLLQAAYLAGRLNL
back to top

mRNA from alignment at M-pyrifera_M_contig85611:114..860+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85611.19962.1 ID=mRNA_M-pyrifera_M_contig85611.19962.1|Name=mRNA_M-pyrifera_M_contig85611.19962.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=747bp|location=Sequence derived from alignment at M-pyrifera_M_contig85611:114..860+ (Macrocystis pyrifera P11B4 male)
ATGACTAACAAGGTGACTGCCATGAAGCCATTTATCGTCTGCTGCATCTT
CTGTGCACTTCCGATGACCGCCCGGGCGACGGATCGCTATTACTTCGACA
TTCATGTCCAGTCCCCCTCCGGACACTATCAGGTGGATGCGACTTCCCCC
GACAATCAGGGCCCCGATCTGAAAGCCTTTCAGGCCAATTTCACCTACAA
ATGTGTCGACACGCGAACCGGGAAAACGATCTGGACGCGTAAGCAGCCGA
TGCGGGAGCCACAACGATACACTTTCGGCGATTCCTCGTTTGAGATCGCA
GTCCCCAAAGAGGGCTCTCCCAGAATCATCATCGTCTCTAACCTGGGCGC
GGCGGCGATCCTTGCTGCGAATGATAACCTCATCACCATATCTTCACAGG
GTAAGAAAACAGAGGAGATTGATTTATTGAAAGATGCCCTGCAGAAAGAG
GAGAGCGAGCGGCTGATGTATCACTCGTGGGGTGGCAGCAACTGGTCTCG
ACTGGCTGCCTGGTACTTTTTCGAGTTGCCTGAAGGTGAAATCTTTGTGA
TTCGCCCCGCCTGGGGACCTCGCATTCTGGTGGATGTTAACAAAGGAAAA
CTCGTTTCAGGCGATGTCAGTCTGATCGGCCCTGCACTAGAAGCGGAAAA
ACAACTGGTGCTGTCCGCCTCTCGTAATAAAATAGAACTTGAAGACCACG
AATGGTCGCTACTGCAGGCAGCTTACCTGGCAGGGAGATTAAATCTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig85611:114..860+

>mRNA_M-pyrifera_M_contig85611.19962.1 ID=mRNA_M-pyrifera_M_contig85611.19962.1|Name=mRNA_M-pyrifera_M_contig85611.19962.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1494bp|location=Sequence derived from alignment at M-pyrifera_M_contig85611:114..860+ (Macrocystis pyrifera P11B4 male)
ATGACTAACAAGGTGACTGCCATGAAGCCATTTATCGTCTGCTGCATCTT
CTGTGCACTTCCGATGACCGCCCGGGCGACGGATCGCTATTACTTCGACA
TTCATGTCCAGTCCCCCTCCGGACACTATCAGGTGGATGCGACTTCCCCC
GACAATCAGGGCCCCGATCTGAAAGCCTTTCAGGCCAATTTCACCTACAA
ATGTGTCGACACGCGAACCGGGAAAACGATCTGGACGCGTAAGCAGCCGA
TGCGGGAGCCACAACGATACACTTTCGGCGATTCCTCGTTTGAGATCGCA
GTCCCCAAAGAGGGCTCTCCCAGAATCATCATCGTCTCTAACCTGGGCGC
GGCGGCGATCCTTGCTGCGAATGATAACCTCATCACCATATCTTCACAGG
GTAAGAAAACAGAGGAGATTGATTTATTGAAAGATGCCCTGCAGAAAGAG
GAGAGCGAGCGGCTGATGTATCACTCGTGGGGTGGCAGCAACTGGTCTCG
ACTGGCTGCCTGGTACTTTTTCGAGTTGCCTGAAGGTGAAATCTTTGTGA
TTCGCCCCGCCTGGGGACCTCGCATTCTGGTGGATGTTAACAAAGGAAAA
CTCGTTTCAGGCGATGTCAGTCTGATCGGCCCTGCACTAGAAGCGGAAAA
ACAACTGGTGCTGTCCGCCTCTCGTAATAAAATAGAACTTGAAGACCACG
AATGGTCGCTACTGCAGGCAGCTTACCTGGCAGGGAGATTAAATCTGATG
ACTAACAAGGTGACTGCCATGAAGCCATTTATCGTCTGCTGCATCTTCTG
TGCACTTCCGATGACCGCCCGGGCGACGGATCGCTATTACTTCGACATTC
ATGTCCAGTCCCCCTCCGGACACTATCAGGTGGATGCGACTTCCCCCGAC
AATCAGGGCCCCGATCTGAAAGCCTTTCAGGCCAATTTCACCTACAAATG
TGTCGACACGCGAACCGGGAAAACGATCTGGACGCGTAAGCAGCCGATGC
GGGAGCCACAACGATACACTTTCGGCGATTCCTCGTTTGAGATCGCAGTC
CCCAAAGAGGGCTCTCCCAGAATCATCATCGTCTCTAACCTGGGCGCGGC
GGCGATCCTTGCTGCGAATGATAACCTCATCACCATATCTTCACAGGGTA
AGAAAACAGAGGAGATTGATTTATTGAAAGATGCCCTGCAGAAAGAGGAG
AGCGAGCGGCTGATGTATCACTCGTGGGGTGGCAGCAACTGGTCTCGACT
GGCTGCCTGGTACTTTTTCGAGTTGCCTGAAGGTGAAATCTTTGTGATTC
GCCCCGCCTGGGGACCTCGCATTCTGGTGGATGTTAACAAAGGAAAACTC
GTTTCAGGCGATGTCAGTCTGATCGGCCCTGCACTAGAAGCGGAAAAACA
ACTGGTGCTGTCCGCCTCTCGTAATAAAATAGAACTTGAAGACCACGAAT
GGTCGCTACTGCAGGCAGCTTACCTGGCAGGGAGATTAAATCTG
back to top