mRNA_M-pyrifera_M_contig855.19931.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig855.19931.1
Unique NamemRNA_M-pyrifera_M_contig855.19931.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig855.19931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig855contigM-pyrifera_M_contig855:16815..17892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1078
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig855.19931.1prot_M-pyrifera_M_contig855.19931.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig855 17279..17875 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816764.2517574-UTR-M-pyrifera_M_contig855:16814..172781622816764.2517574-UTR-M-pyrifera_M_contig855:16814..17278Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig855 16815..17278 +
1692278164.5235019-UTR-M-pyrifera_M_contig855:16814..172781692278164.5235019-UTR-M-pyrifera_M_contig855:16814..17278Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig855 16815..17278 +
1622816764.274956-UTR-M-pyrifera_M_contig855:17875..178921622816764.274956-UTR-M-pyrifera_M_contig855:17875..17892Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig855 17876..17892 +
1692278164.5454183-UTR-M-pyrifera_M_contig855:17875..178921692278164.5454183-UTR-M-pyrifera_M_contig855:17875..17892Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig855 17876..17892 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816764.2628472-CDS-M-pyrifera_M_contig855:17278..178751622816764.2628472-CDS-M-pyrifera_M_contig855:17278..17875Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig855 17279..17875 +
1692278164.5348063-CDS-M-pyrifera_M_contig855:17278..178751692278164.5348063-CDS-M-pyrifera_M_contig855:17278..17875Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig855 17279..17875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig855.19931.1

>prot_M-pyrifera_M_contig855.19931.1 ID=prot_M-pyrifera_M_contig855.19931.1|Name=mRNA_M-pyrifera_M_contig855.19931.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=199bp
MYERGETKNRVTSQTKKTYFLRSLLFKHRIARREGHHATQAKHIRRGGWS
SSTIAQQKEAYKKTVFPAQQHGWSGSGLQILFCCYHIDLPRSTFLRIPQP
LHRRGFPTCFMTRTEERKSPLQDPLFSEKPSGAISEDHYFSRKVKEEKNQ
AGAVCTLSPPSPTTGKTVIIRSLVQNDNAPSHFLSKKNDKKRIISQNQ*
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mRNA from alignment at M-pyrifera_M_contig855:16815..17892+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig855.19931.1 ID=mRNA_M-pyrifera_M_contig855.19931.1|Name=mRNA_M-pyrifera_M_contig855.19931.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1078bp|location=Sequence derived from alignment at M-pyrifera_M_contig855:16815..17892+ (Macrocystis pyrifera P11B4 male)
GGCATATTTAATGGTTTCTTGCTGCCGCAGTCTTCTCGCACCAAGACTTA
AGTGGCACTTGAACGCCAGCCAGCTAAATCATTGGAACGCAGCTTAGAAA
GGTTGAATAAAATTGGTTGAACAATAAACCATGGCACCCATTCATCGACT
ACGTTCCACACAGGATGTGTCCCCTTTAGTCACTTCAAAATCAACGTAGG
GTTGGCTGTATTATTTCCACCATTGAAAACACCAGCAGATGGAAGAGGAT
ATTTTCATTCAAATGTCATTAATCGTGTCAGGACCAGCGATCGAGTGCCG
AACGTTACATTATGCGCGCCAACCAGCGATCAATCAAATGACTATGAACA
AAAAACGCCTACGACGCCAACGAAACGAGAAAAACAAAAACCAAACCAAG
AAACTGGCCTGGCCTTACCCGCCCGTCGAAACAGGCCAAAGCAAAAGGCA
AAGGGTACACAAAAATGTACGAGAGGGGGGAAACAAAAAACAGAGTGACC
TCACAAACCAAGAAGACATACTTCTTACGTAGTCTCCTCTTCAAACACCG
TATAGCACGGCGGGAAGGACACCACGCCACACAAGCCAAGCACATAAGGC
GGGGCGGATGGTCCAGCTCAACCATTGCGCAGCAAAAAGAAGCATACAAA
AAAACAGTATTCCCAGCACAACAGCATGGCTGGAGTGGTTCAGGACTACA
GATACTTTTTTGTTGCTATCATATTGATTTGCCCCGTTCGACTTTCCTCC
GTATTCCCCAACCCCTCCATAGGCGAGGGTTTCCAACATGTTTCATGACG
CGTACAGAGGAGCGCAAAAGTCCTTTACAAGACCCCCTTTTCTCCGAGAA
ACCGTCTGGCGCTATTTCCGAAGACCATTATTTTTCGAGGAAAGTCAAAG
AAGAAAAAAATCAAGCCGGTGCTGTATGTACTCTATCGCCGCCGTCGCCG
ACAACAGGGAAAACGGTGATCATTCGTTCCCTCGTTCAAAATGATAATGC
TCCTTCCCATTTTCTCTCGAAGAAAAATGACAAAAAACGTATCATATCAC
AAAACCAATAGGCCAATCAAGCACCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig855:16815..17892+

>mRNA_M-pyrifera_M_contig855.19931.1 ID=mRNA_M-pyrifera_M_contig855.19931.1|Name=mRNA_M-pyrifera_M_contig855.19931.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1194bp|location=Sequence derived from alignment at M-pyrifera_M_contig855:16815..17892+ (Macrocystis pyrifera P11B4 male)
ATGTACGAGAGGGGGGAAACAAAAAACAGAGTGACCTCACAAACCAAGAA
GACATACTTCTTACGTAGTCTCCTCTTCAAACACCGTATAGCACGGCGGG
AAGGACACCACGCCACACAAGCCAAGCACATAAGGCGGGGCGGATGGTCC
AGCTCAACCATTGCGCAGCAAAAAGAAGCATACAAAAAAACAGTATTCCC
AGCACAACAGCATGGCTGGAGTGGTTCAGGACTACAGATACTTTTTTGTT
GCTATCATATTGATTTGCCCCGTTCGACTTTCCTCCGTATTCCCCAACCC
CTCCATAGGCGAGGGTTTCCAACATGTTTCATGACGCGTACAGAGGAGCG
CAAAAGTCCTTTACAAGACCCCCTTTTCTCCGAGAAACCGTCTGGCGCTA
TTTCCGAAGACCATTATTTTTCGAGGAAAGTCAAAGAAGAAAAAAATCAA
GCCGGTGCTGTATGTACTCTATCGCCGCCGTCGCCGACAACAGGGAAAAC
GGTGATCATTCGTTCCCTCGTTCAAAATGATAATGCTCCTTCCCATTTTC
TCTCGAAGAAAAATGACAAAAAACGTATCATATCACAAAACCAATAGATG
TACGAGAGGGGGGAAACAAAAAACAGAGTGACCTCACAAACCAAGAAGAC
ATACTTCTTACGTAGTCTCCTCTTCAAACACCGTATAGCACGGCGGGAAG
GACACCACGCCACACAAGCCAAGCACATAAGGCGGGGCGGATGGTCCAGC
TCAACCATTGCGCAGCAAAAAGAAGCATACAAAAAAACAGTATTCCCAGC
ACAACAGCATGGCTGGAGTGGTTCAGGACTACAGATACTTTTTTGTTGCT
ATCATATTGATTTGCCCCGTTCGACTTTCCTCCGTATTCCCCAACCCCTC
CATAGGCGAGGGTTTCCAACATGTTTCATGACGCGTACAGAGGAGCGCAA
AAGTCCTTTACAAGACCCCCTTTTCTCCGAGAAACCGTCTGGCGCTATTT
CCGAAGACCATTATTTTTCGAGGAAAGTCAAAGAAGAAAAAAATCAAGCC
GGTGCTGTATGTACTCTATCGCCGCCGTCGCCGACAACAGGGAAAACGGT
GATCATTCGTTCCCTCGTTCAAAATGATAATGCTCCTTCCCATTTTCTCT
CGAAGAAAAATGACAAAAAACGTATCATATCACAAAACCAATAG
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