mRNA_M-pyrifera_M_contig85249.19874.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85249.19874.1
Unique NamemRNA_M-pyrifera_M_contig85249.19874.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85249.19874.1 vs. uniprot
Match: A0A7S0PGU6_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PGU6_CAFRO)

HSP 1 Score: 183 bits (464), Expect = 3.390e-55
Identity = 82/138 (59.42%), Postives = 102/138 (73.91%), Query Frame = 1 
Query:    4 QFEERLYQRNLIEVALFRNTLISLPTGLGKTFIAAVVMHNFYRWFPDGLVVFMAPTRPLVSQQVQACHQVCSFPEEHVANLQGTTSPKKRKEYWNSARIVYCTPHILANDLEKKTFDARRIVCIVIDEAHKTTGSYPY 417
            ++ ER YQ  +   ALF NTL+SLPTGLGKTFIAAVVMHN+ RWFP G VVFMAPTRPLV+QQV+ACH++   P E  A +QG+ +   R+ YW    ++YCTP +L NDLE +  DARRIV +V+DEAH+ TG Y Y
Sbjct:   39 EYPEREYQLAIAGRALFENTLVSLPTGLGKTFIAAVVMHNYRRWFPSGKVVFMAPTRPLVAQQVEACHKIVGIPAEDTAQMQGSVAASLREGYWRERAVIYCTPQMLQNDLEARRVDARRIVLLVLDEAHRATGKYAY 176
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BLAST of mRNA_M-pyrifera_M_contig85249.19874.1 vs. uniprot
Match: A0A418AL25_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AL25_9STRA)

HSP 1 Score: 179 bits (453), Expect = 3.220e-54
Identity = 76/134 (56.72%), Postives = 100/134 (74.63%), Query Frame = 1 
Query:   16 RLYQRNLIEVALFRNTLISLPTGLGKTFIAAVVMHNFYRWFPDGLVVFMAPTRPLVSQQVQACHQVCSFPEEHVANLQGTTSPKKRKEYWNSARIVYCTPHILANDLEKKTFDARRIVCIVIDEAHKTTGSYPY 417
            R YQ+++   AL++NTL+ LPTGLGKT IAAVVM+NF+RWFP G +VFMAPT+PLVSQQ+QACH V   P+  +A LQG  +P KRK  W + R+ +CTP  + ND+E+   D R  VC+V+DEAH+ TG+Y Y
Sbjct:   40 RAYQQSISRAALYQNTLVCLPTGLGKTLIAAVVMYNFHRWFPRGKIVFMAPTKPLVSQQIQACHDVMPIPQHDMAELQGNVAPSKRKALWATKRVFFCTPQSMQNDIERGNCDVRSFVCVVVDEAHRATGNYAY 173
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BLAST of mRNA_M-pyrifera_M_contig85249.19874.1 vs. uniprot
Match: B8CFY5_THAPS (Atp-dependent RNA helicase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFY5_THAPS)

HSP 1 Score: 177 bits (448), Expect = 1.590e-53
Identity = 75/137 (54.74%), Postives = 102/137 (74.45%), Query Frame = 1 
Query:    1 DQFEERLYQRNLIEVALFRNTLISLPTGLGKTFIAAVVMHNFYRWFPDGLVVFMAPTRPLVSQQVQACHQVCSFPEEHVANLQGTTSPKKRKEYWNSARIVYCTPHILANDLEKKTFDARRIVCIVIDEAHKTTGSY 411
            +++ ER YQ  + + A+  NTL+SLPTGLGKT IAAVVM+N+YRWFP G VVF APTRPLV+QQ+QAC+++   PE H A + G + P+ R+  WNS R+ +CTPH L  D+E    DA+ IVC+V+DEAH+ TG++
Sbjct:    7 EKYPERSYQLQMSQTAIMANTLVSLPTGLGKTLIAAVVMYNYYRWFPTGKVVFCAPTRPLVTQQIQACYKIMGIPELHTAEISGRSKPESRENMWNSKRVFFCTPHTLVKDIEGGRCDAKSIVCVVMDEAHRATGNH 143
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BLAST of mRNA_M-pyrifera_M_contig85249.19874.1 vs. uniprot
Match: A0A3Q2P0J9_FUNHE (Helicase ATP-binding domain-containing protein n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2P0J9_FUNHE)

HSP 1 Score: 179 bits (455), Expect = 1.250e-52
Identity = 77/134 (57.46%), Postives = 106/134 (79.10%), Query Frame = 1 
Query:   16 RLYQRNLIEVALFRNTLISLPTGLGKTFIAAVVMHNFYRWFPDGLVVFMAPTRPLVSQQVQACHQVCSFPEEHVANLQGTTSPKKRKEYWNSARIVYCTPHILANDLEKKTFDARRIVCIVIDEAHKTTGSYPY 417
            R YQ  + E ALF+NTL+ LPTGLGKTFIAAVVM+NFYRW+P G +VFMAPT+PLV+QQ++AC++V   P+EH+A L G+T+ K+R+E W + R+ + TP ++ NDL + T  AR+I C+VIDEAHK +G++ Y
Sbjct:  159 REYQLKISEAALFQNTLVCLPTGLGKTFIAAVVMYNFYRWYPAGKIVFMAPTKPLVAQQIEACYKVMGIPQEHMAELTGSTAAKQRQEVWRAKRVFFLTPQVMVNDLSRDTCPARQIKCVVIDEAHKASGNHAY 292
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BLAST of mRNA_M-pyrifera_M_contig85249.19874.1 vs. uniprot
Match: A0A834F547_ORYME (Fanconi anemia group M protein n=1 Tax=Oryzias melastigma TaxID=30732 RepID=A0A834F547_ORYME)

HSP 1 Score: 177 bits (448), Expect = 1.850e-52
Identity = 75/134 (55.97%), Postives = 104/134 (77.61%), Query Frame = 1 
Query:   16 RLYQRNLIEVALFRNTLISLPTGLGKTFIAAVVMHNFYRWFPDGLVVFMAPTRPLVSQQVQACHQVCSFPEEHVANLQGTTSPKKRKEYWNSARIVYCTPHILANDLEKKTFDARRIVCIVIDEAHKTTGSYPY 417
            R YQ  + E ALF+NTL+ LPTGLGKTFIAAVVM+NFYRW+P G +VFMAPT+PLV+QQ++AC++V   P+ H+A L G+T+ K+R+E W S R+ + TP ++ NDL + T  A+++ C+VIDEAHK  G++ Y
Sbjct:   58 RNYQLKISEAALFQNTLVCLPTGLGKTFIAAVVMYNFYRWYPSGKIVFMAPTKPLVAQQIEACYKVMGIPQTHMAELTGSTAAKQRQEVWKSKRVFFLTPQVMVNDLSRDTCPAKQVKCVVIDEAHKALGNHAY 191
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BLAST of mRNA_M-pyrifera_M_contig85249.19874.1 vs. uniprot
Match: A0A6G0IFN3_LARCR (Fanconi anemia group M protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0IFN3_LARCR)

HSP 1 Score: 175 bits (443), Expect = 6.430e-52
Identity = 74/134 (55.22%), Postives = 105/134 (78.36%), Query Frame = 1 
Query:   16 RLYQRNLIEVALFRNTLISLPTGLGKTFIAAVVMHNFYRWFPDGLVVFMAPTRPLVSQQVQACHQVCSFPEEHVANLQGTTSPKKRKEYWNSARIVYCTPHILANDLEKKTFDARRIVCIVIDEAHKTTGSYPY 417
            R YQ  + E ALF+NTL+ LPTGLGKTFIA+VVM+NFYRW+P G +VFMAPT+PLV+QQ++AC++V   P+ H+A L G+T+ K+R+E W + R+ + TP ++ NDL ++T  A++I C+VIDEAHK  G++ Y
Sbjct:   66 RGYQMKISEAALFQNTLVCLPTGLGKTFIASVVMYNFYRWYPAGKIVFMAPTKPLVAQQIEACYKVMGIPQAHMAELTGSTAAKQRQEVWKTKRVFFLTPQVMVNDLSRETCPAKQIKCVVIDEAHKALGNHAY 199
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BLAST of mRNA_M-pyrifera_M_contig85249.19874.1 vs. uniprot
Match: A0A3B5ANG5_9TELE (Fanconi anemia group M protein-like n=1 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B5ANG5_9TELE)

HSP 1 Score: 176 bits (445), Expect = 7.010e-52
Identity = 75/134 (55.97%), Postives = 104/134 (77.61%), Query Frame = 1 
Query:   16 RLYQRNLIEVALFRNTLISLPTGLGKTFIAAVVMHNFYRWFPDGLVVFMAPTRPLVSQQVQACHQVCSFPEEHVANLQGTTSPKKRKEYWNSARIVYCTPHILANDLEKKTFDARRIVCIVIDEAHKTTGSYPY 417
            R YQ  + E ALF+NTL+ LPTGLGKTFIA+VVM+NFYRW+P G +VFMAPT+PLV+QQ++AC +V   P+ H+A L G+T+ K+R+E W S R+ + TP ++ANDL + T  A+++ C+VIDEAHK  G++ Y
Sbjct:   75 REYQLKISEAALFQNTLVCLPTGLGKTFIASVVMYNFYRWYPSGKIVFMAPTKPLVAQQIEACFKVMGIPQAHMAELTGSTAAKQRQELWRSKRVFFLTPQVMANDLSRDTCPAQQVKCVVIDEAHKALGNHAY 208
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BLAST of mRNA_M-pyrifera_M_contig85249.19874.1 vs. uniprot
Match: A0A3B5L1V2_9TELE (Helicase ATP-binding domain-containing protein n=1 Tax=Xiphophorus couchianus TaxID=32473 RepID=A0A3B5L1V2_9TELE)

HSP 1 Score: 175 bits (444), Expect = 9.660e-52
Identity = 74/134 (55.22%), Postives = 105/134 (78.36%), Query Frame = 1 
Query:   16 RLYQRNLIEVALFRNTLISLPTGLGKTFIAAVVMHNFYRWFPDGLVVFMAPTRPLVSQQVQACHQVCSFPEEHVANLQGTTSPKKRKEYWNSARIVYCTPHILANDLEKKTFDARRIVCIVIDEAHKTTGSYPY 417
            R YQ  + E +LF+NTL+ LPTGLGKTFIA+VVM+NFYRW+P G +VFMAPT+PLV+QQ++AC++V   P++H+A L G+T+ K+R+E W S R+ + TP ++ NDL ++T  A+ I C+VIDEAHK  G++ Y
Sbjct:   67 RDYQLKMSEASLFQNTLVCLPTGLGKTFIASVVMYNFYRWYPAGKIVFMAPTKPLVAQQIEACYKVMGIPQDHMAELTGSTAAKQRQEVWKSKRVFFLTPQVMVNDLSRETCPAKEIKCVVIDEAHKALGNHAY 200
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BLAST of mRNA_M-pyrifera_M_contig85249.19874.1 vs. uniprot
Match: UPI001E1BE7C0 (Fanconi anemia group M protein-like n=1 Tax=Desmodus rotundus TaxID=9430 RepID=UPI001E1BE7C0)

HSP 1 Score: 173 bits (439), Expect = 1.320e-51
Identity = 76/134 (56.72%), Postives = 99/134 (73.88%), Query Frame = 1 
Query:   16 RLYQRNLIEVALFRNTLISLPTGLGKTFIAAVVMHNFYRWFPDGLVVFMAPTRPLVSQQVQACHQVCSFPEEHVANLQGTTSPKKRKEYWNSARIVYCTPHILANDLEKKTFDARRIVCIVIDEAHKTTGSYPY 417
            R YQ ++   ALF NTL+ LPTGLGKTFIAAVVM+NFYRWFP G VVFMAPT+PLV+QQ++AC++V   P+ H+A + G+T    RKE W+S R+++ TP ++ NDL +    A  I C+VIDEAHK  G+Y Y
Sbjct:   95 RDYQLHIARAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQIEACYRVMGIPQSHMAEMTGSTQASTRKEIWHSKRVIFLTPQVMVNDLSRGACPAAEIKCLVIDEAHKALGNYAY 228
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BLAST of mRNA_M-pyrifera_M_contig85249.19874.1 vs. uniprot
Match: A0A5A8D9V6_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D9V6_CAFRO)

HSP 1 Score: 183 bits (465), Expect = 1.480e-51
Identity = 82/138 (59.42%), Postives = 102/138 (73.91%), Query Frame = 1 
Query:    4 QFEERLYQRNLIEVALFRNTLISLPTGLGKTFIAAVVMHNFYRWFPDGLVVFMAPTRPLVSQQVQACHQVCSFPEEHVANLQGTTSPKKRKEYWNSARIVYCTPHILANDLEKKTFDARRIVCIVIDEAHKTTGSYPY 417
            ++ ER YQ  +   ALF NTL+SLPTGLGKTFIAAVVMHN+ RWFP G VVFMAPTRPLV+QQV+ACH++   P E  A +QG+ +   R+ YW    ++YCTP +L NDLE +  DARRIV +V+DEAH+ TG Y Y
Sbjct:   84 EYPEREYQLAIAGRALFENTLVSLPTGLGKTFIAAVVMHNYRRWFPSGKVVFMAPTRPLVAQQVEACHKIVGIPAEDTAQMQGSVAASLREGYWRERAVIYCTPQMLQNDLEARRVDARRIVLLVVDEAHRATGKYAY 221
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85249.19874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0PGU6_CAFRO3.390e-5559.42Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A418AL25_9STRA3.220e-5456.72Helicase ATP-binding domain-containing protein n=1... [more]
B8CFY5_THAPS1.590e-5354.74Atp-dependent RNA helicase (Fragment) n=1 Tax=Thal... [more]
A0A3Q2P0J9_FUNHE1.250e-5257.46Helicase ATP-binding domain-containing protein n=1... [more]
A0A834F547_ORYME1.850e-5255.97Fanconi anemia group M protein n=1 Tax=Oryzias mel... [more]
A0A6G0IFN3_LARCR6.430e-5255.22Fanconi anemia group M protein n=1 Tax=Larimichthy... [more]
A0A3B5ANG5_9TELE7.010e-5255.97Fanconi anemia group M protein-like n=1 Tax=Stegas... [more]
A0A3B5L1V2_9TELE9.660e-5255.22Helicase ATP-binding domain-containing protein n=1... [more]
UPI001E1BE7C01.320e-5156.72Fanconi anemia group M protein-like n=1 Tax=Desmod... [more]
A0A5A8D9V6_CAFRO1.480e-5159.42Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85249contigM-pyrifera_M_contig85249:291..707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.1
Seed ortholog evalue1.4e-42
Seed eggNOG ortholog157072.XP_008864916.1
Preferred nameFANCM
KEGG koko:K10896
KEGG Pathwayko03460,map03460
KEGG ModuleM00413
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000019,GO:0000280,GO:0000712,GO:0000724,GO:0000725,GO:0003674,GO:0003678,GO:0003682,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010605,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0031297,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0036297,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043240,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045003,GO:0045005,GO:0045132,GO:0045910,GO:0045934,GO:0045950,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071821,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901576,GO:1903046
EggNOG free text desc.helicase activity
EggNOG OGsCOG1111@1,COG5141@1,KOG0354@2759,KOG0955@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Exons1
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.223534-CDS-M-pyrifera_M_contig85249:290..7071622816761.223534-CDS-M-pyrifera_M_contig85249:290..707Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85249 291..707 +
1692278162.81478-CDS-M-pyrifera_M_contig85249:290..7071692278162.81478-CDS-M-pyrifera_M_contig85249:290..707Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85249 291..707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85249.19874.1prot_M-pyrifera_M_contig85249.19874.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85249 291..707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85249.19874.1

>prot_M-pyrifera_M_contig85249.19874.1 ID=prot_M-pyrifera_M_contig85249.19874.1|Name=mRNA_M-pyrifera_M_contig85249.19874.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
DQFEERLYQRNLIEVALFRNTLISLPTGLGKTFIAAVVMHNFYRWFPDGL
VVFMAPTRPLVSQQVQACHQVCSFPEEHVANLQGTTSPKKRKEYWNSARI
VYCTPHILANDLEKKTFDARRIVCIVIDEAHKTTGSYPY
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mRNA from alignment at M-pyrifera_M_contig85249:291..707+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85249.19874.1 ID=mRNA_M-pyrifera_M_contig85249.19874.1|Name=mRNA_M-pyrifera_M_contig85249.19874.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig85249:291..707+ (Macrocystis pyrifera P11B4 male)
GATCAGTTTGAGGAACGATTGTATCAACGAAATTTGATCGAAGTTGCATT
GTTTCGCAACACTCTCATATCTCTCCCTACTGGATTGGGAAAGACTTTCA
TTGCTGCTGTTGTCATGCACAATTTCTACCGATGGTTCCCTGATGGACTT
GTAGTTTTCATGGCACCAACTCGTCCCCTCGTTTCCCAACAAGTGCAAGC
ATGCCATCAAGTTTGTTCCTTCCCTGAAGAGCATGTAGCCAACCTACAAG
GCACAACAAGCCCCAAGAAGCGAAAAGAGTACTGGAACTCTGCACGAATT
GTCTACTGCACCCCACACATCCTTGCCAACGACCTTGAGAAGAAAACGTT
TGATGCAAGACGCATCGTTTGCATCGTCATCGACGAAGCCCACAAGACAA
CGGGATCCTACCCTTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85249:291..707+

>mRNA_M-pyrifera_M_contig85249.19874.1 ID=mRNA_M-pyrifera_M_contig85249.19874.1|Name=mRNA_M-pyrifera_M_contig85249.19874.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig85249:291..707+ (Macrocystis pyrifera P11B4 male)
GATCAGTTTGAGGAACGATTGTATCAACGAAATTTGATCGAAGTTGCATT
GTTTCGCAACACTCTCATATCTCTCCCTACTGGATTGGGAAAGACTTTCA
TTGCTGCTGTTGTCATGCACAATTTCTACCGATGGTTCCCTGATGGACTT
GTAGTTTTCATGGCACCAACTCGTCCCCTCGTTTCCCAACAAGTGCAAGC
ATGCCATCAAGTTTGTTCCTTCCCTGAAGAGCATGTAGCCAACCTACAAG
GCACAACAAGCCCCAAGAAGCGAAAAGAGTACTGGAACTCTGCACGAATT
GTCTACTGCACCCCACACATCCTTGCCAACGACCTTGAGAAGAAAACGTT
TGATGCAAGACGCATCGTTTGCATCGTCATCGACGAAGCCCACAAGACAA
CGGGATCCTACCCTTACGATCAGTTTGAGGAACGATTGTATCAACGAAAT
TTGATCGAAGTTGCATTGTTTCGCAACACTCTCATATCTCTCCCTACTGG
ATTGGGAAAGACTTTCATTGCTGCTGTTGTCATGCACAATTTCTACCGAT
GGTTCCCTGATGGACTTGTAGTTTTCATGGCACCAACTCGTCCCCTCGTT
TCCCAACAAGTGCAAGCATGCCATCAAGTTTGTTCCTTCCCTGAAGAGCA
TGTAGCCAACCTACAAGGCACAACAAGCCCCAAGAAGCGAAAAGAGTACT
GGAACTCTGCACGAATTGTCTACTGCACCCCACACATCCTTGCCAACGAC
CTTGAGAAGAAAACGTTTGATGCAAGACGCATCGTTTGCATCGTCATCGA
CGAAGCCCACAAGACAACGGGATCCTACCCTTAC
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