mRNA_M-pyrifera_M_contig83816.19569.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83816.19569.1
Unique NamemRNA_M-pyrifera_M_contig83816.19569.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83816.19569.1 vs. uniprot
Match: A0A5A8E2D6_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E2D6_CAFRO)

HSP 1 Score: 69.7 bits (169), Expect = 6.990e-13
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:    4 ADGGDATRLAPFNPTGKASIAAAMELLKLEKEDSLLDVGCGDGRLLIQAA 153
            A GG A  LAPFNPT  A++AAA++LL+L  ED+LLDVGCGDGR+L+ A+
Sbjct:  111 ATGGSAAHLAPFNPTSDAAVAAALQLLQLSPEDTLLDVGCGDGRVLVAAS 160          
BLAST of mRNA_M-pyrifera_M_contig83816.19569.1 vs. uniprot
Match: A0A7S0K6I7_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K6I7_CAFRO)

HSP 1 Score: 69.7 bits (169), Expect = 1.070e-12
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:    4 ADGGDATRLAPFNPTGKASIAAAMELLKLEKEDSLLDVGCGDGRLLIQAA 153
            A GG A  LAPFNPT  A++AAA++LL+L  ED+LLDVGCGDGR+L+ A+
Sbjct:  168 ATGGSAAHLAPFNPTSDAAVAAALQLLQLSPEDTLLDVGCGDGRVLVAAS 217          
BLAST of mRNA_M-pyrifera_M_contig83816.19569.1 vs. uniprot
Match: A0A5A8CLN7_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CLN7_CAFRO)

HSP 1 Score: 69.7 bits (169), Expect = 1.430e-12
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:    4 ADGGDATRLAPFNPTGKASIAAAMELLKLEKEDSLLDVGCGDGRLLIQAA 153
            A GG A  LAPFNPT  A++AAA++LL+L  ED+LLDVGCGDGR+L+ A+
Sbjct:  427 ATGGSAAHLAPFNPTSDAAVAAALQLLQLSPEDTLLDVGCGDGRVLVAAS 476          
BLAST of mRNA_M-pyrifera_M_contig83816.19569.1 vs. uniprot
Match: A0A835YND5_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YND5_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.470e-9
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 1
Query:   28 LAPFNPTGKASIAAAMELLKLEKEDSLLDVGCGDGRLLIQAA 153
            LAPFNP+G+  I AA++LL L ++D L D+GCGDGRLL+QAA
Sbjct:   24 LAPFNPSGELVIDAALQLLSLTEKDLLFDLGCGDGRLLVQAA 65          
BLAST of mRNA_M-pyrifera_M_contig83816.19569.1 vs. uniprot
Match: A0A7S2GI29_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GI29_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.540e-9
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1
Query:   28 LAPFNPTGKASIAAAMELLKLEKEDSLLDVGCGDGRLLIQAAKD 159
            LAPFNPT    IA A+ELL L+  D LLD+GCGDGR+LIQA ++
Sbjct:   39 LAPFNPTSAEGIAVALELLDLQPGDVLLDLGCGDGRVLIQAVEE 82          
BLAST of mRNA_M-pyrifera_M_contig83816.19569.1 vs. uniprot
Match: D7FNN4_ECTSI (Methyltransf_25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNN4_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.180e-8
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1
Query:   25 RLAPFNPTGKASIAAAMELLKLEKEDSLLDVGCGDGRLLIQAAK 156
            +LAPFNP+  A I  A+E+L+L KE  L D+GCGDGRLL++A K
Sbjct:   11 KLAPFNPSSDAVIRMAIEMLQLVKESILYDLGCGDGRLLVEAIK 54          
BLAST of mRNA_M-pyrifera_M_contig83816.19569.1 vs. uniprot
Match: A0A7S1XM06_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XM06_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.380e-7
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 1
Query:   28 LAPFNPTGKASIAAAMELLKLEKEDSLLDVGCGDGRLLIQAA 153
            LAPFNP+G   I  A+++L L ++D+L DVGCGDGRLL++AA
Sbjct:   41 LAPFNPSGDDVINDALDMLGLGEDDTLWDVGCGDGRLLVEAA 82          
BLAST of mRNA_M-pyrifera_M_contig83816.19569.1 vs. uniprot
Match: A0A8J2X2G9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2G9_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.640e-7
Identity = 24/43 (55.81%), Postives = 34/43 (79.07%), Query Frame = 1
Query:   28 LAPFNPTGKASIAAAMELLKLEKEDSLLDVGCGDGRLLIQAAK 156
            LAPFNPT +A++A A+ELL + + D + DVGCGDGR ++ AA+
Sbjct:   97 LAPFNPTPEAAVAKALELLDVGEGDVVYDVGCGDGRFVVAAAR 139          
BLAST of mRNA_M-pyrifera_M_contig83816.19569.1 vs. uniprot
Match: A0A1Q9CSX0_SYMMI (cGMP-dependent protein kinase n=5 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9CSX0_SYMMI)

HSP 1 Score: 53.5 bits (127), Expect = 7.310e-7
Identity = 21/47 (44.68%), Postives = 36/47 (76.60%), Query Frame = 1
Query:   16 DATRLAPFNPTGKASIAAAMELLKLEKEDSLLDVGCGDGRLLIQAAK 156
            +A +LAP+NPT + +I   ++ L+++  D+L D+GCGDGR+L+ AA+
Sbjct:  530 EAVKLAPYNPTPECAIKQVLDTLEVQSGDTLFDLGCGDGRMLLAAAR 576          
BLAST of mRNA_M-pyrifera_M_contig83816.19569.1 vs. uniprot
Match: A0A2V8U7L4_9BACT (SAM-dependent methyltransferase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8U7L4_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 1.420e-6
Identity = 21/48 (43.75%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   16 DATRLAPFNPTGKASIAAAMELLKLEKEDSLLDVGCGDGRLLIQAAKD 159
            DA ++ P+ PT    ++A ++L  + K D+++D+GCGDGR++I AAKD
Sbjct:   38 DAKKIVPYVPTTPEVVSAMLKLANVTKNDTVIDLGCGDGRIVIAAAKD 85          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83816.19569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8E2D6_CAFRO6.990e-1364.00Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A7S0K6I7_CAFRO1.070e-1264.00Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A5A8CLN7_CAFRO1.430e-1264.00Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A835YND5_9STRA1.470e-964.29S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S2GI29_9STRA1.540e-963.64Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D7FNN4_ECTSI1.180e-859.09Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A7S1XM06_9STRA1.380e-759.52Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A8J2X2G9_9STRA2.640e-755.81Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1Q9CSX0_SYMMI7.310e-744.68cGMP-dependent protein kinase n=5 Tax=Symbiodinium... [more]
A0A2V8U7L4_9BACT1.420e-643.75SAM-dependent methyltransferase n=1 Tax=Acidobacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83816contigM-pyrifera_M_contig83816:727..888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue5.8e-08
Seed eggNOG ortholog42099.EPrPV00000013367
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Source PGD
EggNOG OGs1MGMG@121069,2S237@2759,COG0500@1
COG Functional cat.Q
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size162
Cds size162
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816746.0408633-CDS-M-pyrifera_M_contig83816:726..8881622816746.0408633-CDS-M-pyrifera_M_contig83816:726..888Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83816 727..888 +
1692278153.4583583-CDS-M-pyrifera_M_contig83816:726..8881692278153.4583583-CDS-M-pyrifera_M_contig83816:726..888Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83816 727..888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83816.19569.1prot_M-pyrifera_M_contig83816.19569.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83816 727..888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83816.19569.1

>prot_M-pyrifera_M_contig83816.19569.1 ID=prot_M-pyrifera_M_contig83816.19569.1|Name=mRNA_M-pyrifera_M_contig83816.19569.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
MADGGDATRLAPFNPTGKASIAAAMELLKLEKEDSLLDVGCGDGRLLIQA
AKDV
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mRNA from alignment at M-pyrifera_M_contig83816:727..888+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83816.19569.1 ID=mRNA_M-pyrifera_M_contig83816.19569.1|Name=mRNA_M-pyrifera_M_contig83816.19569.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig83816:727..888+ (Macrocystis pyrifera P11B4 male)
ATGGCTGATGGAGGAGATGCAACTAGACTCGCTCCATTTAATCCCACAGG GAAGGCATCCATTGCAGCTGCAATGGAGCTTCTGAAGCTGGAGAAGGAAG ATTCATTGCTGGATGTAGGTTGTGGGGATGGTAGGTTGTTGATTCAGGCA GCAAAAGATGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83816:727..888+

>mRNA_M-pyrifera_M_contig83816.19569.1 ID=mRNA_M-pyrifera_M_contig83816.19569.1|Name=mRNA_M-pyrifera_M_contig83816.19569.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig83816:727..888+ (Macrocystis pyrifera P11B4 male)
ATGGCTGATGGAGGAGATGCAACTAGACTCGCTCCATTTAATCCCACAGG
GAAGGCATCCATTGCAGCTGCAATGGAGCTTCTGAAGCTGGAGAAGGAAG
ATTCATTGCTGGATGTAGGTTGTGGGGATGGTAGGTTGTTGATTCAGGCA
GCAAAAGATGTTATGGCTGATGGAGGAGATGCAACTAGACTCGCTCCATT
TAATCCCACAGGGAAGGCATCCATTGCAGCTGCAATGGAGCTTCTGAAGC
TGGAGAAGGAAGATTCATTGCTGGATGTAGGTTGTGGGGATGGTAGGTTG
TTGATTCAGGCAGCAAAAGATGTT
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