mRNA_M-pyrifera_M_contig83566.19519.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig83566.19519.1
Unique Name	mRNA_M-pyrifera_M_contig83566.19519.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig83566.19519.1 vs. uniprot
Match: A0A6I6AE47_9PLAN (YjbQ family protein n=17 Tax=Planctomycetaceae TaxID=126 RepID=A0A6I6AE47_9PLAN)

HSP 1 Score: 136 bits (343), Expect = 6.430e-40
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1

Query:    1 NAGGYLHNQTGEDNADAHHKRQIMGREVVVAITDGQLHLGPWEHIFYYEFDGRRRKRILVKIIGE 195
            N+GGYLHN+TGEDNADAHHKRQIMGREVVVAITDGQLHLGPWEHIFYYEFDGRRRKRILVKIIGE
Sbjct:   80 NSGGYLHNRTGEDNADAHHKRQIMGREVVVAITDGQLHLGPWEHIFYYEFDGRRRKRILVKIIGE 144

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BLAST of mRNA_M-pyrifera_M_contig83566.19519.1 vs. uniprot
Match: A0A517PZI7_9PLAN (Uncharacterized protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A517PZI7_9PLAN)

HSP 1 Score: 136 bits (343), Expect = 6.430e-40
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1

Query:    1 NAGGYLHNQTGEDNADAHHKRQIMGREVVVAITDGQLHLGPWEHIFYYEFDGRRRKRILVKIIGE 195
            N+GGYLHNQTGEDNADAHHKRQIMGREVVVAIT+GQLHLGPWEHIFYYEFDGRRRKRILVKIIGE
Sbjct:   80 NSGGYLHNQTGEDNADAHHKRQIMGREVVVAITEGQLHLGPWEHIFYYEFDGRRRKRILVKIIGE 144

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BLAST of mRNA_M-pyrifera_M_contig83566.19519.1 vs. uniprot
Match: A0A2E3GYC2_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E3GYC2_9PLAN)

HSP 1 Score: 134 bits (338), Expect = 3.710e-39
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 1

Query:    1 NAGGYLHNQTGEDNADAHHKRQIMGREVVVAITDGQLHLGPWEHIFYYEFDGRRRKRILVKIIGE 195
            N GGYLHN+TGEDNADAHHKRQIMGREVVVAITDGQLHLGPWEHIFYYEFDG+RRKRILVKIIGE
Sbjct:   80 NKGGYLHNRTGEDNADAHHKRQIMGREVVVAITDGQLHLGPWEHIFYYEFDGKRRKRILVKIIGE 144

[Close]

BLAST of mRNA_M-pyrifera_M_contig83566.19519.1 vs. uniprot
Match: A0A2D6SRI9_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A2D6SRI9_9PLAN)

HSP 1 Score: 134 bits (336), Expect = 7.480e-39
Identity = 59/65 (90.77%), Postives = 65/65 (100.00%), Query Frame = 1

Query:    1 NAGGYLHNQTGEDNADAHHKRQIMGREVVVAITDGQLHLGPWEHIFYYEFDGRRRKRILVKIIGE 195
            N+GGYLHN+TGEDNADAHHKRQIMGREV+VAITDG+LHLGPWEHIFYYEFDGRRRKR+LVK+IGE
Sbjct:   80 NSGGYLHNRTGEDNADAHHKRQIMGREVIVAITDGKLHLGPWEHIFYYEFDGRRRKRVLVKVIGE 144

[Close]

BLAST of mRNA_M-pyrifera_M_contig83566.19519.1 vs. uniprot
Match: A0A2E7EKK5_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7EKK5_9PLAN)

HSP 1 Score: 134 bits (336), Expect = 7.480e-39
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1

Query:    7 GGYLHNQTGEDNADAHHKRQIMGREVVVAITDGQLHLGPWEHIFYYEFDGRRRKRILVKIIGE 195
            GGYLHN+TGEDNADAHHKRQIMGREVVVAITDGQLHLGPWEHIFYYEFDGRRRKRILVK+IGE
Sbjct:   82 GGYLHNRTGEDNADAHHKRQIMGREVVVAITDGQLHLGPWEHIFYYEFDGRRRKRILVKVIGE 144

[Close]

BLAST of mRNA_M-pyrifera_M_contig83566.19519.1 vs. uniprot
Match: A0A356A9H7_9PLAN (Uncharacterized protein n=5 Tax=Planctomycetaceae TaxID=126 RepID=A0A356A9H7_9PLAN)

HSP 1 Score: 132 bits (332), Expect = 9.970e-39
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 1

Query:    1 NAGGYLHNQTGEDNADAHHKRQIMGREVVVAITDGQLHLGPWEHIFYYEFDGRRRKRILVKIIGE 195
            N GGYLHN TGEDNADAHHKRQIMGREVVVAITDG+LHLGPWEHIFYYEFDG+RRKR+LVKIIGE
Sbjct:   43 NKGGYLHNSTGEDNADAHHKRQIMGREVVVAITDGKLHLGPWEHIFYYEFDGKRRKRVLVKIIGE 107

[Close]

BLAST of mRNA_M-pyrifera_M_contig83566.19519.1 vs. uniprot
Match: A0A517TF31_9PLAN (Uncharacterized protein n=1 Tax=Calycomorphotria hydatis TaxID=2528027 RepID=A0A517TF31_9PLAN)

HSP 1 Score: 133 bits (334), Expect = 1.510e-38
Identity = 59/65 (90.77%), Postives = 64/65 (98.46%), Query Frame = 1

Query:    1 NAGGYLHNQTGEDNADAHHKRQIMGREVVVAITDGQLHLGPWEHIFYYEFDGRRRKRILVKIIGE 195
            N+GGYLHN+TGEDNADAHHKRQ+MGREVVVAIT GQLHLGPWEHIFYYEFDGRRRKRIL+K+IGE
Sbjct:   80 NSGGYLHNRTGEDNADAHHKRQVMGREVVVAITSGQLHLGPWEHIFYYEFDGRRRKRILIKVIGE 144

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BLAST of mRNA_M-pyrifera_M_contig83566.19519.1 vs. uniprot
Match: A0A518ASD2_9BACT (Uncharacterized protein n=6 Tax=Bacteria TaxID=2 RepID=A0A518ASD2_9BACT)

HSP 1 Score: 132 bits (333), Expect = 2.140e-38
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 1

Query:    7 GGYLHNQTGEDNADAHHKRQIMGREVVVAITDGQLHLGPWEHIFYYEFDGRRRKRILVKIIGE 195
            GGYLHN+TGEDNADAHHKRQIMGREVVVAITDGQLHLGPWEHIFYYEFDGRR+KR+LVKIIGE
Sbjct:   82 GGYLHNRTGEDNADAHHKRQIMGREVVVAITDGQLHLGPWEHIFYYEFDGRRKKRVLVKIIGE 144

[Close]

BLAST of mRNA_M-pyrifera_M_contig83566.19519.1 vs. uniprot
Match: A0A517X3L7_9PLAN (Uncharacterized protein n=7 Tax=Planctomycetia TaxID=203683 RepID=A0A517X3L7_9PLAN)

HSP 1 Score: 131 bits (329), Expect = 2.390e-38
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 1

Query:    7 GGYLHNQTGEDNADAHHKRQIMGREVVVAITDGQLHLGPWEHIFYYEFDGRRRKRILVKIIGE 195
            GGYLHN+TGEDNADAHHKRQIMGREVVVAITDG+LHLGPWEHIFYYEFDGRRRKRILVKIIG+
Sbjct:   39 GGYLHNRTGEDNADAHHKRQIMGREVVVAITDGKLHLGPWEHIFYYEFDGRRRKRILVKIIGK 101

[Close]

BLAST of mRNA_M-pyrifera_M_contig83566.19519.1 vs. uniprot
Match: A0A517V627_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517V627_9PLAN)

HSP 1 Score: 133 bits (334), Expect = 2.420e-38
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 1

Query:    1 NAGGYLHNQTGEDNADAHHKRQIMGREVVVAITDGQLHLGPWEHIFYYEFDGRRRKRILVKIIGE 195
            N+GGYLHN+TGEDNADAHHKRQIMGREVVVAITDG+LHLGPWEHIFYYEFDG RRKRILVKIIGE
Sbjct:   96 NSGGYLHNRTGEDNADAHHKRQIMGREVVVAITDGRLHLGPWEHIFYYEFDGHRRKRILVKIIGE 160

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig83566.19519.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig83566.19519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6I6AE47_9PLAN	6.430e-40	96.92	YjbQ family protein n=17 Tax=Planctomycetaceae Tax...	[more]
A0A517PZI7_9PLAN	6.430e-40	96.92	Uncharacterized protein n=4 Tax=Gimesia TaxID=1649...	[more]
A0A2E3GYC2_9PLAN	3.710e-39	95.38	Uncharacterized protein n=2 Tax=Planctomycetaceae ...	[more]
A0A2D6SRI9_9PLAN	7.480e-39	90.77	Uncharacterized protein n=2 Tax=Planctomycetia Tax...	[more]
A0A2E7EKK5_9PLAN	7.480e-39	96.83	Uncharacterized protein n=1 Tax=Planctomycetaceae ...	[more]
A0A356A9H7_9PLAN	9.970e-39	92.31	Uncharacterized protein n=5 Tax=Planctomycetaceae ...	[more]
A0A517TF31_9PLAN	1.510e-38	90.77	Uncharacterized protein n=1 Tax=Calycomorphotria h...	[more]
A0A518ASD2_9BACT	2.140e-38	95.24	Uncharacterized protein n=6 Tax=Bacteria TaxID=2 R...	[more]
A0A517X3L7_9PLAN	2.390e-38	95.24	Uncharacterized protein n=7 Tax=Planctomycetia Tax...	[more]
A0A517V627_9PLAN	2.420e-38	93.85	Uncharacterized protein n=1 Tax=Gimesia algae TaxI...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig83566	contig	M-pyrifera_M_contig83566:2..199 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	133.7
Seed ortholog evalue	3.2e-29
Seed eggNOG ortholog	344747.PM8797T_08939
Hectar predicted targeting category	other localisation
EggNOG free text desc.	PFAM Uncharacterised protein family UPF0047
EggNOG OGs	2IZ7Q@203682,COG0432@1,COG0432@2
COG Functional cat.	S
Best tax level	Planctomycetes
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	198
Cds size	198
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816743.1547701-CDS-M-pyrifera_M_contig83566:1..199	1622816743.1547701-CDS-M-pyrifera_M_contig83566:1..199	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig83566 2..199 +
1692278151.8857653-CDS-M-pyrifera_M_contig83566:1..199	1692278151.8857653-CDS-M-pyrifera_M_contig83566:1..199	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig83566 2..199 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig83566.19519.1	prot_M-pyrifera_M_contig83566.19519.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig83566 2..199 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig83566:2..199+
coding sequence from alignment at M-pyrifera_M_contig83566:2..199+

protein sequence of mRNA_M-pyrifera_M_contig83566.19519.1

>prot_M-pyrifera_M_contig83566.19519.1 ID=prot_M-pyrifera_M_contig83566.19519.1|Name=mRNA_M-pyrifera_M_contig83566.19519.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
NAGGYLHNQTGEDNADAHHKRQIMGREVVVAITDGQLHLGPWEHIFYYEF
DGRRRKRILVKIIGE*

mRNA from alignment at M-pyrifera_M_contig83566:2..199+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig83566.19519.1 ID=mRNA_M-pyrifera_M_contig83566.19519.1|Name=mRNA_M-pyrifera_M_contig83566.19519.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig83566:2..199+ (Macrocystis pyrifera P11B4 male)
AATGCCGGCGGCTATCTACACAACCAGACCGGCGAAGACAACGCCGACGC
CCACCACAAACGCCAGATCATGGGCCGCGAAGTCGTCGTCGCCATCACCG
ACGGCCAGCTCCACCTGGGACCCTGGGAACACATTTTTTATTACGAGTTC
GACGGCCGCCGACGGAAGCGGATTCTGGTGAAGATTATTGGGGAGTGA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig83566:2..199+

>mRNA_M-pyrifera_M_contig83566.19519.1 ID=mRNA_M-pyrifera_M_contig83566.19519.1|Name=mRNA_M-pyrifera_M_contig83566.19519.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig83566:2..199+ (Macrocystis pyrifera P11B4 male)
AATGCCGGCGGCTATCTACACAACCAGACCGGCGAAGACAACGCCGACGC
CCACCACAAACGCCAGATCATGGGCCGCGAAGTCGTCGTCGCCATCACCG
ACGGCCAGCTCCACCTGGGACCCTGGGAACACATTTTTTATTACGAGTTC
GACGGCCGCCGACGGAAGCGGATTCTGGTGAAGATTATTGGGGAGTGAAA
TGCCGGCGGCTATCTACACAACCAGACCGGCGAAGACAACGCCGACGCCC
ACCACAAACGCCAGATCATGGGCCGCGAAGTCGTCGTCGCCATCACCGAC
GGCCAGCTCCACCTGGGACCCTGGGAACACATTTTTTATTACGAGTTCGA
CGGCCGCCGACGGAAGCGGATTCTGGTGAAGATTATTGGGGAGTGA