mRNA_M-pyrifera_M_contig83143.19423.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83143.19423.1
Unique NamemRNA_M-pyrifera_M_contig83143.19423.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83143.19423.1 vs. uniprot
Match: UPI001E28D680 (four helix bundle protein n=1 Tax=Stieleria neptunia TaxID=2527979 RepID=UPI001E28D680)

HSP 1 Score: 54.3 bits (129), Expect = 1.440e-7
Identity = 37/54 (68.52%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    4 LHRIVSMLTRLIARSDSVGESEVEYEEGTNVGESGGEYEYRDAEYXXXXEEGTK 165
            LHRIVSMLTRLIARSD+V ES VEY  GT       EYEYRDA  XXXX +G K
Sbjct:   87 LHRIVSMLTRLIARSDAVAESPVEYNAGT-------EYEYRDAXXXXXXXQGRK 133
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BLAST of mRNA_M-pyrifera_M_contig83143.19423.1 vs. uniprot
Match: A0A518HLK8_9BACT (Uncharacterized protein n=1 Tax=Stieleria neptunia TaxID=2527979 RepID=A0A518HLK8_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 1.850e-7
Identity = 33/55 (60.00%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:    1 LLHRIVSMLTRLIARSDSVGESEVEYEEGTNVGESGGEYEYRDAEYXXXXEEGTK 165
            LLHRIVSMLTRLIARS +V E   EY  G        EYEYRDAEY    +EG K
Sbjct:  103 LLHRIVSMLTRLIARSATVAELPAEYNAGV-------EYEYRDAEYEYKYDEGRK 150
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BLAST of mRNA_M-pyrifera_M_contig83143.19423.1 vs. uniprot
Match: A0A5C6E8R1_9BACT (Uncharacterized protein n=1 Tax=Novipirellula aureliae TaxID=2527966 RepID=A0A5C6E8R1_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 3.620e-7
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 LLHRIVSMLTRLIARSDSVGESEVEYEEGTNVGESGGEYEYRDAEY 138
            +LHRIVSMLTR+IARSD V ES  EY  G        +YEYRDAEY
Sbjct:   34 ILHRIVSMLTRMIARSDLVAESATEYNAGVEY-----KYEYRDAEY 74
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BLAST of mRNA_M-pyrifera_M_contig83143.19423.1 vs. uniprot
Match: A0A518HJT1_9BACT (Uncharacterized protein n=6 Tax=Stieleria neptunia TaxID=2527979 RepID=A0A518HJT1_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 6.800e-7
Identity = 30/42 (71.43%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    4 LHRIVSMLTRLIARSDSVGESEVEYEEGTNVGESGGEYEYRD 129
            LHRIVSMLTRLIARSD+V ES VEY  GT       EYEYRD
Sbjct:   56 LHRIVSMLTRLIARSDAVAESPVEYNAGT-------EYEYRD 90
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BLAST of mRNA_M-pyrifera_M_contig83143.19423.1 vs. uniprot
Match: M5S6B9_9BACT (S23 ribosomal protein n=2 Tax=Rhodopirellula maiorica SM1 TaxID=1265738 RepID=M5S6B9_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 2.550e-6
Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:    1 LLHRIVSMLTRLIARSDSVGESEVEYEEGTNVGESGGEYEYRDAEYXXXXEEGTK 165
            +LHRIV MLTRLIARSD V ES  EY+          EYEYR+AEY    EEG +
Sbjct:   74 ILHRIVLMLTRLIARSDVVAESGAEYDTAL-------EYEYRNAEYEYKYEEGRE 121
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BLAST of mRNA_M-pyrifera_M_contig83143.19423.1 vs. uniprot
Match: A0A5C6E5H7_9BACT (Uncharacterized protein n=1 Tax=Novipirellula aureliae TaxID=2527966 RepID=A0A5C6E5H7_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 4.330e-6
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 LLHRIVSMLTRLIARSDSVGESEVEYEEGTNVGESGGEYEYRDAEY 138
            +LHRIVSMLTRLIARSD V ES  EY  G        +YEYR+AEY
Sbjct:  103 ILHRIVSMLTRLIARSDVVAESATEYNAGVEY-----KYEYREAEY 143
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BLAST of mRNA_M-pyrifera_M_contig83143.19423.1 vs. uniprot
Match: M5RPC6_9BACT (23S rRNA-associated protein n=1 Tax=Rhodopirellula maiorica SM1 TaxID=1265738 RepID=M5RPC6_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 1.470e-5
Identity = 29/44 (65.91%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 LLHRIVSMLTRLIARSDSVGESEVEYEEGTNVGESGGEYEYRDA 132
            LLHRIVSMLTRLIARSD++GES  EY           EYEYRDA
Sbjct:  103 LLHRIVSMLTRLIARSDALGESAAEYNAEV-------EYEYRDA 139
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BLAST of mRNA_M-pyrifera_M_contig83143.19423.1 vs. uniprot
Match: A0A5B9MHY3_9BACT (Uncharacterized protein n=1 Tax=Stieleria maiorica TaxID=2795974 RepID=A0A5B9MHY3_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 3.910e-5
Identity = 28/45 (62.22%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:    4 LHRIVSMLTRLIARSDSVGESEVEYEEGTNVGESGGEYEYRDAEY 138
            LHRIVSMLTRLIAR D V E   EY  G +       YEYRDAEY
Sbjct:  104 LHRIVSMLTRLIARGDVVAELPTEYNAGVD-------YEYRDAEY 141
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BLAST of mRNA_M-pyrifera_M_contig83143.19423.1 vs. uniprot
Match: A0A5C6CDV6_9BACT (Uncharacterized protein n=1 Tax=Novipirellula galeiformis TaxID=2528004 RepID=A0A5C6CDV6_9BACT)

HSP 1 Score: 47.8 bits (112), Expect = 5.350e-5
Identity = 28/45 (62.22%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    4 LHRIVSMLTRLIARSDSVGESEVEYEEGTNVGESGGEYEYRDAEY 138
            L RIVSMLTRLIAR+D+V ES   Y        +G EYEYRDAEY
Sbjct:  104 LKRIVSMLTRLIARADAVSESNAPYN-------AGDEYEYRDAEY 141
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83143.19423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI001E28D6801.440e-768.52four helix bundle protein n=1 Tax=Stieleria neptun... [more]
A0A518HLK8_9BACT1.850e-760.00Uncharacterized protein n=1 Tax=Stieleria neptunia... [more]
A0A5C6E8R1_9BACT3.620e-763.04Uncharacterized protein n=1 Tax=Novipirellula aure... [more]
A0A518HJT1_9BACT6.800e-771.43Uncharacterized protein n=6 Tax=Stieleria neptunia... [more]
M5S6B9_9BACT2.550e-656.36S23 ribosomal protein n=2 Tax=Rhodopirellula maior... [more]
A0A5C6E5H7_9BACT4.330e-663.04Uncharacterized protein n=1 Tax=Novipirellula aure... [more]
M5RPC6_9BACT1.470e-565.9123S rRNA-associated protein n=1 Tax=Rhodopirellula... [more]
A0A5B9MHY3_9BACT3.910e-562.22Uncharacterized protein n=1 Tax=Stieleria maiorica... [more]
A0A5C6CDV6_9BACT5.350e-562.22Uncharacterized protein n=1 Tax=Novipirellula gale... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83143contigM-pyrifera_M_contig83143:1..680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size180
Cds size159
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83143.19423.1prot_M-pyrifera_M_contig83143.19423.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83143 22..680 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816738.4470289-UTR-M-pyrifera_M_contig83143:0..211622816738.4470289-UTR-M-pyrifera_M_contig83143:0..21Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83143 1..21 +
1692278149.292767-UTR-M-pyrifera_M_contig83143:0..211692278149.292767-UTR-M-pyrifera_M_contig83143:0..21Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83143 1..21 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816738.4625702-CDS-M-pyrifera_M_contig83143:21..921622816738.4625702-CDS-M-pyrifera_M_contig83143:21..92Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83143 22..92 +
1692278149.3041701-CDS-M-pyrifera_M_contig83143:21..921692278149.3041701-CDS-M-pyrifera_M_contig83143:21..92Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83143 22..92 +
1622816738.4742215-CDS-M-pyrifera_M_contig83143:592..6801622816738.4742215-CDS-M-pyrifera_M_contig83143:592..680Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83143 593..680 +
1692278149.3159332-CDS-M-pyrifera_M_contig83143:592..6801692278149.3159332-CDS-M-pyrifera_M_contig83143:592..680Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83143 593..680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83143.19423.1

>prot_M-pyrifera_M_contig83143.19423.1 ID=prot_M-pyrifera_M_contig83143.19423.1|Name=mRNA_M-pyrifera_M_contig83143.19423.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
MLTRLIARSDSVGESEVEYEEGTNVGESGGEYEYRDAEYEYEYEEGTKKA
RS*
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mRNA from alignment at M-pyrifera_M_contig83143:1..680+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83143.19423.1 ID=mRNA_M-pyrifera_M_contig83143.19423.1|Name=mRNA_M-pyrifera_M_contig83143.19423.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=680bp|location=Sequence derived from alignment at M-pyrifera_M_contig83143:1..680+ (Macrocystis pyrifera P11B4 male)
CTTCTGCATCGGATCGTGTCAATGTTGACTCGGTTGATCGCACGTTCAGA
TAGCGTGGGCGAGTCGGAAGTCGAGTACGAAGAAGGCACGAAGTCTCAGC
CCCGTCGTTCAAGTTGACGACAAATGTTTTGGCAATGAATCGTACTCGTA
CTCAGGGCGCAGCCCGGTACTCGTACTCTTACTCGACTCGCGGCACCGAT
GACCGAACCAACCTTCGACCTTCGATCGAGGACGTCGCTTCGTCGTTTGC
CACTCGCCAAGGAGCTGAATAGCTTGCGGGTGAGGCTGGATAGCGTGGGT
GCGGCCGGAGCCGAGTACGAGTACCGCGATGCTGAGTACGAAGTACGAAG
TACGAAGAAAGCACGAAACCAGGCCCCGGTCGTTCTGAGGGCGGTAGATC
TTCTGGCAATGAATCGTACTCGTACTTAGGGCGCAGCCCGGTACTCGTAC
TCCTACTCGACTCGCGGCACCGATGACCGATCCAGTTTTCGATCTCGAAC
GACGTGACGTTACTCGCCTCTCGATCGAGGACGTCGCTTCGTCGTTTGCC
AGTCGCCAAGGAGCTGAACAGCTCGCTCGTGAACTCGGATAGCGTGGGTG
AGTCGGGGGGCGAGTACGAGTACCGCGATGCTGAGTACGAGTACGAGTAC
GAAGAAGGCACGAAGAAGGCACGAAGCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83143:1..680+

>mRNA_M-pyrifera_M_contig83143.19423.1 ID=mRNA_M-pyrifera_M_contig83143.19423.1|Name=mRNA_M-pyrifera_M_contig83143.19423.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig83143:1..680+ (Macrocystis pyrifera P11B4 male)
ATGTTGACTCGGTTGATCGCACGTTCAGATAGCGTGGGCGAGTCGGAAGT
CGAGTACGAAGAAGGCACGAAATGTTGACTCGGTTGATCGCACGTTCAGA
TAGCGTGGGCGAGTCGGAAGTCGAGTACGAAGAAGGCACGAACGTGGGTG
AGTCGGGGGGCGAGTACGAGTACCGCGATGCTGAGTACGAGTACGAGTAC
GAAGAAGGCACGAAGAAGGCACGAAGCTAGCGTGGGTGAGTCGGGGGGCG
AGTACGAGTACCGCGATGCTGAGTACGAGTACGAGTACGAAGAAGGCACG
AAGAAGGCACGAAGCTAG
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